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Accession: PRJNA1028665 ID: 1028665

KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series
AccessionPRJNA1028665; GEO: GSE245529
TypeUmbrella project
PublicationsAn J et al., "An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution.", Proc Natl Acad Sci U S A, 2024 Jul 9;121(28):e2400737121
SubmissionRegistration date: 16-Oct-2023
Universite Paris Saclay
RelevanceSuperseries
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments37
Publications
PubMed1
PMC1
Other datasets
BioSample37
GEO DataSets6
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes23296
SRA Data Details
ParameterValue
Data volume, Gbases617
Data volume, Tbytes0.24
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac encompasses the following 5 sub-projects:
Project TypeNumber of Projects
Epigenomics3
BioProject
accession
OrganismTitle
PRJNA1028669Solanum lycopersicumKRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq] (Universite Paris Saclay)
PRJNA1102390Solanum lycopersicumKRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ATAC-Seq] (Universite Paris Saclay)
PRJNA1102392Solanum lycopersicumKRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-Seq] (Universite Paris Saclay)
Other1
BioProject
accession
OrganismTitle
PRJNA1028670Solanum lycopersicumKRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [Hi-C] (Universite Paris Saclay)
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA1028671Solanum lycopersicumKRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [RNA-seq] (Universite Paris Saclay)

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