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Accession: PRJNA471733 ID: 471733

The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.

The Hungate Collection includes 410 reference genomes of cultivated bacterial and archaeal members of the rumen microbiome. The rumen microbiome is the community of microorganisms that live in the gastrointestinal system (specifically, the rumen) of the ruminant animal. The project was initiated to generate resources to help understand and eventually modulate the function of the rumen microbiome towards increasing livestock productivity and reducing methane emissions.
AccessionPRJNA471733
TypeUmbrella project
PublicationsSeshadri R et al., "Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.", Nat Biotechnol, 2018 Apr;36(4):359-367
SubmissionRegistration date: 16-May-2018
DOE Joint Genome Institute
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8226
WGS master170
SRA Experiments531
Protein Sequences24525
Publications
PubMed1
PMC1
Other datasets
BioSample456
Assembly170
SRA Data Details
ParameterValue
Data volume, Gbases709
Data volume, Tbytes0.40
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome. encompasses the following 410 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds
Contigs
SRA or Trace
Total

107
63
240
410
BioProject
accession		Assembly
level		OrganismTitle
PRJNA323062 SRA or TraceAcetitomaculum ruminis DSM 5522Acetitomaculum ruminis DSM 5522 genome sequencing (DOE Joint Genome Institute)
PRJNA254891 SRA or TraceAcidaminococcus fermentansAcidaminococcus fermentans strain:pGA-4 Genome sequencing (DOE Joint Genome Institute)
PRJNA323320 SRA or TraceAcidaminococcus fermentansAcidaminococcus fermentens WCC6 genome sequencing (DOE Joint Genome Institute)
PRJNA323321 SRA or TraceAcinetobacter sp. DSM 11652Acinetobacter sp. DSM 11652 isolate:DSM 11652 Genome sequencing (DOE Joint Genome Institute)
PRJNA323063 SRA or TraceActinomyces denticolensActinomyces denticolens PA genome sequencing (DOE Joint Genome Institute)
List all 410 'Genome sequencing' projects...

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