A master bioproject to bring together all high-throughput DNA and RNA sequencing data, assemblies and related analyses, developed by the Penn State Program in the Molecular Biology of Cacao.
Accession | PRJNA936437 |
Type | Umbrella project |
Submission | Registration date: 18-Feb-2023 Penn State University |
Related Resources | |
Relevance | Agricultural |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (Genomic DNA) | 10 |
SRA Experiments | 996 |
Protein Sequences | 27910 |
Publications |
PubMed | 3 |
PMC | 1 |
Other datasets |
BioSample | 945 |
GEO DataSets | 1 |
Assembly | 1 |
Theobroma cacao encompasses the following 6 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : SRA or Trace No data links Total | 2 1 3
|
BioProject accession | Assembly level | Name | Title |
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PRJNA933172 | SRA or Trace | Cacao Gene Atlas | Cacao Gene Atlas (Cacao Gene Atlas Consortium) | PRJNA956872 | No data links | Theobroma cacao | Theobroma cacao strain:Sca6 | isolate:Scavina 6 Genome sequencing and assembly (Penn State University) | PRJNA742476 | SRA or Trace | Transcriptomic profiles of cacao cell cultures under different light regimes | Transcriptomic profiles of cacao cell cultures under different light regimes (Universidad de Antioquia) |
|
other | 1 |
BioProject accession | Organism | Title |
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PRJNA558793 | Theobroma cacao | Theobroma cacao Disease Resistance : Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops (Claude dePamphilis Lab, Penn...) |
|
transcriptome | 2 |
BioProject accession | Organism | Title |
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PRJNA931994 | Theobroma cacao | Theobroma cacao Gene Atlas: Developmental and Associated Transcriptomes (Penn State University) | PRJNA476877 | Theobroma cacao | Resistant and susceptible cacao varieties exhibit defense gene polymorphism and different responses to Phytophthora megakarya inoculation (Guiltinan Lab, Plant Molecular...) |
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