hot springs metagenome (ID 392119) - BioProject

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Accession: PRJNA392119 ID: 392119

hot springs metagenome

hot springs metagenome Genome sequencing and assembly

The goal of this project was to characterize the microbial community of Japanese hot springs as unique analogs of early Earth environments, including those in which geobiologically important rock types like stromatolites and banded iron formations were deposited. More...

Accession	PRJNA392119
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	hot springs metagenome[Taxonomy ID: 433727] unclassified sequences; metagenomes; ecological metagenomes; hot springs metagenome
Submission	Registration date: 16-Aug-2017 California Institute of Technology
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	107293
WGS master	181
SRA Experiments	14
Protein Sequences	482713
Other datasets
BioSample	200
Assembly	181

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

181
181

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_003697135.1	RFGC00000000	SAMN10119914	J014	Acidobacteriota bacterium
GCA_003697015.1	RFGL00000000	SAMN10119923	J023	Acidobacteriota bacterium
GCA_003696865.1	RFHM00000000	SAMN10119950	J050	Acidobacteriota bacterium
GCA_003696155.1	RFFP00000000	SAMN10119901	J001	Acidobacteriota bacterium
GCA_003696075.1	RFHH00000000	SAMN10119945	J045	Acidobacteriota bacterium
GCA_003695645.1	RFHY00000000	SAMN10119962	J062	Acidobacteriota bacterium
GCA_003695625.1	RFIB00000000	SAMN10119965	J065	Acidobacteriota bacterium
GCA_003697065.1	RFFY00000000	SAMN10119910	J010	Actinomyces sp.
GCA_003694835.1	RFJT00000000	SAMN10120009	J109	Alphaproteobacteria bacterium
GCA_003694465.1	RFKM00000000	SAMN10120028	J128	Alphaproteobacteria bacterium
GCA_003694205.1	RFKS00000000	SAMN10120034	J134	Alphaproteobacteria bacterium
GCA_003694165.1	RFKW00000000	SAMN10120038	J138	Alphaproteobacteria bacterium
GCA_003693905.1	RFLL00000000	SAMN10120053	J153	Alphaproteobacteria bacterium
GCA_003693805.1	RFLR00000000	SAMN10120059	J159	Alphaproteobacteria bacterium
GCA_003697125.1	RFGB00000000	SAMN10119913	J013	Alphaproteobacteria bacterium
GCA_003696705.1	RFGD00000000	SAMN10119915	J015	Alphaproteobacteria bacterium
GCA_003695555.1	RFIU00000000	SAMN10119984	J084	Alphaproteobacteria bacterium
GCA_003694925.1	RFJK00000000	SAMN10120000	J100	Alphaproteobacteria bacterium
GCA_003695135.1	RFIR00000000	SAMN10119981	J081	Alphaproteobacteria bacterium
GCA_003695065.1	RFJA00000000	SAMN10119990	J090	Alphaproteobacteria bacterium
GCA_003696035.1	RFID00000000	SAMN10119967	J067	Alphaproteobacteria bacterium
GCA_003130835.1	QEXX00000000	SAMN08972832	Nak19	Anaerolineae bacterium
GCA_003130845.1	QEXW00000000	SAMN08972833	Nak57	Anaerolineae bacterium
GCA_003694975.1	RFJH00000000	SAMN10119997	J097	Anaerolineae bacterium
GCA_003695165.1	RFIS00000000	SAMN10119982	J082	Anaerolineae bacterium
GCA_003694235.1	RFKO00000000	SAMN10120030	J130	Anaerolineae bacterium
GCA_003694665.1	RFKP00000000	SAMN10120031	J131	Aquificota bacterium
GCA_003693765.1	RFLT00000000	SAMN10120061	J161	Aquificota bacterium
GCA_003693865.1	RFLQ00000000	SAMN10120058	J158	Aquificota bacterium
GCA_003697005.1	RFGO00000000	SAMN10119926	J026	Aquificota bacterium
GCA_003130875.1	QEXY00000000	SAMN08972831	Nak82	Ardenticatenia bacterium
GCA_003694685.1	RFKN00000000	SAMN10120029	J129	Ardenticatenia bacterium
GCA_002254585.1	NKPU00000000	SAMN07230128	CP1_7O	Armatimonadetes bacterium CP1_7O
GCA_002254605.1	NKPV00000000	SAMN07230129	JP3_11	Armatimonadetes bacterium JP3_11
GCA_003695835.1	RFHN00000000	SAMN10119951	J051	Armatimonadota bacterium
GCA_003695875.1	RFGM00000000	SAMN10119924	J024	Armatimonadota bacterium
GCA_003694295.1	RFKK00000000	SAMN10120026	J126	Bacteroidota bacterium
GCA_003694045.1	RFLD00000000	SAMN10120045	J145	Bacteroidota bacterium
GCA_003695465.1	RFJC00000000	SAMN10119992	J092	Bacteroidota bacterium
GCA_003695425.1	RFJJ00000000	SAMN10119999	J099	Bacteroidota bacterium
GCA_003696175.1	RFGA00000000	SAMN10119912	J012	Bacteroidota bacterium
GCA_003695295.1	RFIJ00000000	SAMN10119973	J073	Bacteroidota bacterium
GCA_003694615.1	RFLB00000000	SAMN10120043	J143	Bacteroidota bacterium
GCA_003695245.1	RFIN00000000	SAMN10119977	J077	Bacteroidota bacterium
GCA_003696835.1	RFHT00000000	SAMN10119957	J057	Bacteroidota bacterium
GCA_003696875.1	RFHL00000000	SAMN10119949	J049	Bacteroidota bacterium
GCA_003696585.1	RFGW00000000	SAMN10119934	J034	Bacteroidota bacterium
GCA_003696485.1	RFHD00000000	SAMN10119941	J041	Bacteroidota bacterium
GCA_003694355.1	RFKI00000000	SAMN10120024	J124	Bdellovibrio sp.
GCA_003694905.1	RFJM00000000	SAMN10120002	J102	Caldilineae bacterium
GCA_003694735.1	RFKB00000000	SAMN10120017	J117	Caldilineae bacterium
GCA_003695385.1	RFKH00000000	SAMN10120023	J123	Caldilineae bacterium
GCA_003697425.1	RFJY00000000	SAMN10120014	J114	Caldilineae bacterium
GCA_003695345.1	RFIG00000000	SAMN10119970	J070	Calditrichota bacterium
GCA_003695285.1	RFIL00000000	SAMN10119975	J075	Calditrichota bacterium
GCA_003695965.1	RFFW00000000	SAMN10119908	J008	Calditrichota bacterium
GCA_003696445.1	RFHE00000000	SAMN10119942	J042	Calditrichota bacterium
GCA_003696775.1	RFFS00000000	SAMN10119904	J004	Calditrichota bacterium
GCA_003694105.1	RFKZ00000000	SAMN10120041	J141	Calditrichota bacterium
GCA_003694115.1	RFKY00000000	SAMN10120040	J140	Calditrichota bacterium
GCA_003696425.1	RFHI00000000	SAMN10119946	J046	Candidatus Dadabacteria bacterium
GCA_003696525.1	RFGX00000000	SAMN10119935	J035	Candidatus Dadabacteria bacterium
GCA_003695505.1	RFIY00000000	SAMN10119988	J088	Candidatus Dadabacteria bacterium
GCA_003695355.1	RFJR00000000	SAMN10120007	J107	Candidatus Dadabacteria bacterium
GCA_003694225.1	RFKT00000000	SAMN10120035	J135	Candidatus Dadabacteria bacterium
GCA_003694065.1	RFLA00000000	SAMN10120042	J142	Candidatus Dadabacteria bacterium
GCA_003694175.1	RFKV00000000	SAMN10120037	J137	Candidatus Dojkabacteria bacterium
GCA_003695005.1	RFJE00000000	SAMN10119994	J094	Candidatus Hydrogenedentota bacterium
GCA_003696745.1	RFGG00000000	SAMN10119918	J018	Candidatus Hydrogenedentota bacterium
GCA_003697085.1	RFFU00000000	SAMN10119906	J006	Candidatus Hydrogenedentota bacterium
GCA_003695105.1	RFIZ00000000	SAMN10119989	J089	Candidatus Neomarinimicrobiota bacterium
GCA_003695185.1	RFIP00000000	SAMN10119979	J079	Candidatus Nitrosothermus koennekii
GCA_003694055.1	RFLC00000000	SAMN10120044	J144	Candidatus Pacearchaeota archaeon
GCA_003693875.1	RFLO00000000	SAMN10120056	J156	Candidatus Pacearchaeota archaeon
GCA_003694565.1	RFLM00000000	SAMN10120054	J154	Candidatus Parcubacteria bacterium
GCA_003694545.1	RFKD00000000	SAMN10120019	J119	Candidatus Parcubacteria bacterium
GCA_003694575.1	RFLG00000000	SAMN10120048	J148	Candidatus Parcubacteria bacterium
GCA_003695395.1	RFJQ00000000	SAMN10120006	J106	Candidatus Parcubacteria bacterium
GCA_003693815.1	RFLS00000000	SAMN10120060	J160	Candidatus Parcubacteria bacterium
GCA_016841965.1	JAEANN000000000	SAMN16955785	AA3_104	Candidatus Roseilinea mizusawaensis
GCA_003695725.1	RFHX00000000	SAMN10119961	J061	Candidatus Schekmanbacteria bacterium
GCA_002794705.1	PGTK00000000	SAMN07982849	CP2_2F	Candidatus Thermofonsia Clade 1 bacterium
GCA_002794615.1	PGTL00000000	SAMN07982848	CP1_1M	Candidatus Thermofonsia Clade 1 bacterium
GCA_002794555.1	PGTM00000000	SAMN07982847	JP3_13	Candidatus Thermofonsia Clade 1 bacterium
GCA_002794645.1	PGTN00000000	SAMN07982846	JP3_7	Candidatus Thermofonsia Clade 3 bacterium
GCA_003693775.1	RFLU00000000	SAMN10120062	J162	Candidatus Thermofonsia bacterium
GCA_003694805.1	RFJU00000000	SAMN10120010	J110	Candidatus Woesearchaeota archaeon
GCA_003694495.1	RFJO00000000	SAMN10120004	J104	Candidatus Woesearchaeota archaeon
GCA_003694525.1	RFLK00000000	SAMN10120052	J152	Candidatus Woesearchaeota archaeon
GCA_003694385.1	RFKA00000000	SAMN10120016	J116	Candidatus Woesearchaeota archaeon
GCA_003695435.1	RFJL00000000	SAMN10120001	J101	Candidatus Woesearchaeota archaeon
GCA_003695045.1	RFJB00000000	SAMN10119991	J091	Candidatus Woesearchaeota archaeon
GCA_003695265.1	RFII00000000	SAMN10119972	J072	Candidatus Woesearchaeota archaeon
GCA_003694285.1	RFKL00000000	SAMN10120027	J127	Candidatus Zixiibacteriota bacterium
GCA_002254845.1	NKPT00000000	SAMN07230127	CP2_5A	Chloracidobacterium sp. CP2_5A
GCA_003695605.1	RFIK00000000	SAMN10119974	J074	Chlorobiota bacterium
GCA_003695455.1	RFJF00000000	SAMN10119995	J095	Chloroflexota bacterium
GCA_003695215.1	RFIM00000000	SAMN10119976	J076	Chloroflexota bacterium
GCA_003695675.1	RFIA00000000	SAMN10119964	J064	Chloroflexota bacterium
GCA_003695545.1	RFIW00000000	SAMN10119986	J086	Chloroflexota bacterium
GCA_003696565.1	RFHA00000000	SAMN10119938	J038	Chloroflexota bacterium
GCA_003696545.1	RFHB00000000	SAMN10119939	J039	Chloroflexota bacterium
GCA_003696605.1	RFGV00000000	SAMN10119933	J033	Chloroflexota bacterium
GCA_003696405.1	RFHF00000000	SAMN10119943	J043	Chloroflexota bacterium
GCA_003696945.1	RFGY00000000	SAMN10119936	J036	Chloroflexota bacterium
GCA_003697365.1	RFGP00000000	SAMN10119927	J027	Chloroflexota bacterium
GCA_003693955.1	RFLI00000000	SAMN10120050	J150	Chloroflexota bacterium
GCA_003694395.1	RFKC00000000	SAMN10120018	J118	Chloroflexota bacterium
GCA_003694775.1	RFJV00000000	SAMN10120011	J111	Chloroflexota bacterium
GCA_003696925.1	RFFR00000000	SAMN10119903	J003	Cyanobacteria bacterium J003
GCA_003695985.1	RFFV00000000	SAMN10119907	J007	Cyanobacteria bacterium J007
GCA_003695795.1	RFHR00000000	SAMN10119955	J055	Cyanobacteria bacterium J055
GCA_003695655.1	RFIF00000000	SAMN10119969	J069	Cyanobacteria bacterium J069
GCA_003695125.1	RFIT00000000	SAMN10119983	J083	Cyanobacteria bacterium J083
GCA_003693975.1	RFLH00000000	SAMN10120049	J149	Cyanobacteria bacterium J149
GCA_003695925.1	RFFZ00000000	SAMN10119911	J011	Deinococcota bacterium
GCA_003696105.1	RFGE00000000	SAMN10119916	J016	Deltaproteobacteria bacterium
GCA_003695785.1	RFHS00000000	SAMN10119956	J056	Deltaproteobacteria bacterium
GCA_003695205.1	RFIO00000000	SAMN10119978	J078	Deltaproteobacteria bacterium
GCA_003695515.1	RFIX00000000	SAMN10119987	J087	Deltaproteobacteria bacterium
GCA_003694725.1	RFKG00000000	SAMN10120022	J122	Deltaproteobacteria bacterium
GCA_003696955.1	RFGU00000000	SAMN10119932	J032	Deltaproteobacteria bacterium
GCA_003696505.1	RFHC00000000	SAMN10119940	J040	Deltaproteobacteria bacterium
GCA_003694345.1	RFKF00000000	SAMN10120021	J121	Deltaproteobacteria bacterium
GCA_003694145.1	RFKX00000000	SAMN10120039	J139	Deltaproteobacteria bacterium
GCA_003694255.1	RFKR00000000	SAMN10120033	J133	Deltaproteobacteria bacterium
GCA_003694325.1	RFKJ00000000	SAMN10120025	J125	Deltaproteobacteria bacterium
GCA_003696665.1	RFGJ00000000	SAMN10119921	J021	Gammaproteobacteria bacterium
GCA_003696645.1	RFGN00000000	SAMN10119925	J025	Gammaproteobacteria bacterium
GCA_003696465.1	RFHG00000000	SAMN10119944	J044	Gammaproteobacteria bacterium
GCA_003696905.1	RFHJ00000000	SAMN10119947	J047	Gammaproteobacteria bacterium
GCA_003695085.1	RFIV00000000	SAMN10119985	J085	Gammaproteobacteria bacterium
GCA_003695825.1	RFHK00000000	SAMN10119948	J048	Gammaproteobacteria bacterium
GCA_003695765.1	RFHQ00000000	SAMN10119954	J054	Gammaproteobacteria bacterium
GCA_003694425.1	RFJX00000000	SAMN10120013	J113	Gammaproteobacteria bacterium
GCA_003694605.1	RFKU00000000	SAMN10120036	J136	Gammaproteobacteria bacterium
GCA_003694005.1	RFLE00000000	SAMN10120046	J146	Gammaproteobacteria bacterium
GCA_003695865.1	RFGQ00000000	SAMN10119928	J028	Gemmatimonadota bacterium
GCA_003697105.1	RFFQ00000000	SAMN10119902	J002	Gemmatimonadota bacterium
GCA_013538855.1	JABXJS000000000	SAMN14439215	OHK22	Herpetosiphonaceae bacterium
GCA_003693835.1	RFLP00000000	SAMN10120057	J157	Ignavibacteria bacterium
GCA_003694015.1	RFLF00000000	SAMN10120047	J147	Lentisphaerota bacterium
GCA_003694965.1	RFJG00000000	SAMN10119996	J096	Methanobacteriota archaeon
GCA_003696825.1	RFHV00000000	SAMN10119959	J059	Methanobacteriota archaeon
GCA_003695745.1	RFHW00000000	SAMN10119960	J060	Methanobacteriota archaeon
GCA_003696125.1	RFHZ00000000	SAMN10119963	J063	Nitrospinota bacterium
GCA_003696145.1	RFGZ00000000	SAMN10119937	J037	Nitrospirota bacterium
GCA_003696065.1	RFHP00000000	SAMN10119953	J053	Nitrospirota bacterium
GCA_003696005.1	RFIC00000000	SAMN10119966	J066	Nitrospirota bacterium
GCA_003695915.1	RFGF00000000	SAMN10119917	J017	Nitrospirota bacterium
GCA_003694865.1	RFJP00000000	SAMN10120005	J105	Nitrospirota bacterium
GCA_003696975.1	RFGT00000000	SAMN10119931	J031	Nitrospirota bacterium
GCA_003693935.1	RFLN00000000	SAMN10120055	J155	Nitrospirota bacterium
GCA_002794695.1	PGTI00000000	SAMN07982851	CP2_42A	Phototrophicales bacterium
GCA_002794585.1	PGTG00000000	SAMN07982853	JP1_16	Phototrophicales bacterium
GCA_002794595.1	PGTH00000000	SAMN07982852	JP1_8	Phototrophicales bacterium
GCA_002794545.1	PGTE00000000	SAMN07982855	JP1_191	Phototrophicales bacterium
GCA_002794515.1	PGTJ00000000	SAMN07982850	CP2_20G	Phototrophicales bacterium
GCA_002794505.1	PGTF00000000	SAMN07982854	JP1_20	Phototrophicales bacterium
GCA_003696385.1	RFHO00000000	SAMN10119952	J052	Planctomycetota bacterium
GCA_003696625.1	RFGR00000000	SAMN10119929	J029	Planctomycetota bacterium
GCA_003696725.1	RFGI00000000	SAMN10119920	J020	Planctomycetota bacterium
GCA_003696675.1	RFGH00000000	SAMN10119919	J019	Planctomycetota bacterium
GCA_003697045.1	RFGK00000000	SAMN10119922	J022	Planctomycetota bacterium
GCA_003694765.1	RFJW00000000	SAMN10120012	J112	Planctomycetota bacterium
GCA_003695305.1	RFIH00000000	SAMN10119971	J071	Planctomycetota bacterium
GCA_003696025.1	RFIE00000000	SAMN10119968	J068	Planctomycetota bacterium
GCA_003695565.1	RFIQ00000000	SAMN10119980	J080	Planctomycetota bacterium
GCA_003695705.1	RFHU00000000	SAMN10119958	J058	Planctomycetota bacterium
GCA_003693915.1	RFLJ00000000	SAMN10120051	J151	Planctomycetota bacterium
GCA_003694875.1	RFJN00000000	SAMN10120003	J103	Planctomycetota bacterium
GCA_003694415.1	RFJZ00000000	SAMN10120015	J115	Planctomycetota bacterium
GCA_003694635.1	RFKQ00000000	SAMN10120032	J132	Planctomycetota bacterium
GCA_003694475.1	RFKE00000000	SAMN10120020	J120	Thermoflexia bacterium
GCA_014466085.1	JACOMP000000000	SAMN15831770	OHK43	Thermosynechococcus sp. OHK43
GCA_003694825.1	RFJS00000000	SAMN10120008	J108	Verrucomicrobiota bacterium
GCA_003695015.1	RFJD00000000	SAMN10119993	J093	Verrucomicrobiota bacterium
GCA_003694935.1	RFJI00000000	SAMN10119998	J098	Zetaproteobacteria bacterium
GCA_003695905.1	RFGS00000000	SAMN10119930	J030	Zetaproteobacteria bacterium
GCA_003696765.1	RFFX00000000	SAMN10119909	J009	Zetaproteobacteria bacterium
GCA_003696795.1	RFFT00000000	SAMN10119905	J005	Zetaproteobacteria bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	79
Data volume, Mbytes	28914

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hot springs metagenome

hot springs metagenome Genome sequencing and assembly

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