wastewater metagenome (ID 647942) - BioProject

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Accession: PRJNA647942 ID: 647942

wastewater metagenome

Enriched anammox lab reactor experiments Metagenomic assembly

Candidatus Brocadia sapporoensis was enriched from disrupted granules from a full-scale anammox reactor at Dokhaven-Sluisjesdijk wastewater treatment plant in Rotterdam, the Netherlands (van der Star et al. More...

Accession	PRJNA647942
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	wastewater metagenome[Taxonomy ID: 527639] unclassified sequences; metagenomes; ecological metagenomes; wastewater metagenome
Publications	Pabst M et al., "A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium.", ISME J, 2022 Feb;16(2):346-357
Submission	Registration date: 5-Aug-2021 SciBear LLC
Relevance	Anammox bacteria are key players in the global bio-geochemical nitrogen cycle, and are a core process in more sustainable and resource-efficient wastewater treatment schemes.

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	47
SRA Experiments	1
Publications
PubMed	1
PMC	1
Other datasets
BioSample	48
Assembly	47

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

43
4
47

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_019454775.1	JACFNN000000000	SAMN15615546	BROCD025	Alphaproteobacteria bacterium
GCA_019455145.1	JACFMW000000000	SAMN15615529	BROCD008	Anaerolineae bacterium
GCA_019454805.1	JACFNQ000000000	SAMN15615549	BROCD028	Anaerolineales bacterium
GCA_019454985.1	JACFNF000000000	SAMN15615538	BROCD017	Bacteroidales bacterium
GCA_019454865.1	JACFNJ000000000	SAMN15615542	BROCD021	Bacteroidia bacterium
GCA_019455105.1	JACFMZ000000000	SAMN15615532	BROCD011	Bacteroidota bacterium
GCA_019455205.1	JACFMV000000000	SAMN15615528	BROCD007	Brumimicrobium sp.
GCA_019454645.1	JACFNX000000000	SAMN15615556	BROCD035	Burkholderiaceae bacterium
GCA_019455155.1	JACFMY000000000	SAMN15615531	BROCD010	Caldilineaceae bacterium
GCA_019455295.1	JACFMP000000000	SAMN15615522	BROCD001	Candidatus Brocadia sapporoensis
GCA_019454875.1	JACFNL000000000	SAMN15615544	BROCD023	Candidatus Cloacimonadota bacterium
GCA_019454465.1	JACFOF000000000	SAMN15615564	BROCD043	Candidatus Dojkabacteria bacterium
GCA_019454605.1	JACFNZ000000000	SAMN15615558	BROCD037	Candidatus Gracilibacteria bacterium
GCA_019455225.1	JACFMU000000000	SAMN15615527	BROCD006	Candidatus Hydrogenedentota bacterium
GCA_019455125.1	JACFNB000000000	SAMN15615534	BROCD013	Candidatus Kapaibacterium sp.
GCA_019454545.1	JACFOC000000000	SAMN15615561	BROCD040	Candidatus Kuenenia stuttgartiensis
GCA_019454585.1	JACFOB000000000	SAMN15615560	BROCD039	Candidatus Omnitrophota bacterium
GCA_019454715.1	JACFNU000000000	SAMN15615553	BROCD032	Chitinophagaceae bacterium
GCA_019454915.1	JACFNM000000000	SAMN15615545	BROCD024	Chitinophagaceae bacterium
GCA_019455085.1	JACFNA000000000	SAMN15615533	BROCD012	Chitinophagaceae bacterium
GCA_019454485.1	JACFOG000000000	SAMN15615565	BROCD044	Deltaproteobacteria bacterium
GCA_019454665.1	JACFNW000000000	SAMN15615555	BROCD034	Fimbriimonadaceae bacterium
GCA_019454445.1	JACFOJ000000000	SAMN15615568	BROCD047	Flavobacteriales bacterium
GCA_019455045.1	JACFND000000000	SAMN15615536	BROCD015	Flavobacteriia bacterium
GCA_019454675.1	JACFNV000000000	SAMN15615554	BROCD033	Gammaproteobacteria bacterium
GCA_019454565.1	JACFOA000000000	SAMN15615559	BROCD038	Gemmatimonadaceae bacterium
GCA_019454905.1	JACFNK000000000	SAMN15615543	BROCD022	Ignavibacteria bacterium
GCA_019454945.1	JACFNI000000000	SAMN15615541	BROCD020	Ignavibacteria bacterium
GCA_019455015.1	JACFNE000000000	SAMN15615537	BROCD016	Ignavibacterium sp.
GCA_019454825.1	JACFNO000000000	SAMN15615547	BROCD026	Kiritimatiellia bacterium
GCA_019455005.1	JACFNH000000000	SAMN15615540	BROCD019	Leptonema sp. (in: bacteria)
GCA_019455245.1	JACFMR000000000	SAMN15615524	BROCD003	Opitutaceae bacterium
GCA_019454415.1	JACFOI000000000	SAMN15615567	BROCD046	Patescibacteria group bacterium
GCA_019454525.1	JACFOD000000000	SAMN15615562	BROCD041	Patescibacteria group bacterium
GCA_019454505.1	JACFOE000000000	SAMN15615563	BROCD042	Patescibacteria group bacterium
GCA_019454965.1	JACFNG000000000	SAMN15615539	BROCD018	Phycisphaerae bacterium
GCA_019454405.1	JACFOH000000000	SAMN15615566	BROCD045	Promineifilum sp.
GCA_019454725.1	JACFNT000000000	SAMN15615552	BROCD031	Pseudorhodoplanes sp.
GCA_019455325.1	JACFMQ000000000	SAMN15615523	BROCD002	Rhodocyclaceae bacterium
GCA_019455185.1	JACFMX000000000	SAMN15615530	BROCD009	Rhodocyclaceae bacterium
GCA_019455065.1	JACFNC000000000	SAMN15615535	BROCD014	Rhodospirillales bacterium
GCA_019454835.1	JACFNP000000000	SAMN15615548	BROCD027	Rubellimicrobium sp.
GCA_019455265.1	JACFMT000000000	SAMN15615526	BROCD005	Simplicispira suum
GCA_019454625.1	JACFNY000000000	SAMN15615557	BROCD036	Sphingomonadaceae bacterium
GCA_019455285.1	JACFMS000000000	SAMN15615525	BROCD004	Sphingomonadales bacterium
GCA_019454705.1	JACFNS000000000	SAMN15615551	BROCD030	Taibaiella sp.
GCA_019454765.1	JACFNR000000000	SAMN15615550	BROCD029	Trueperaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	13
Data volume, Mbytes	3993

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wastewater metagenome

Enriched anammox lab reactor experiments Metagenomic assembly

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