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Accession: PRJNA688628 ID: 688628

Population genomics and Antimicrobial Resistance of Escherichia coli strains

Population genomics and Antimicrobial Resistance of Escherichia coli strains from pig farms in China
AccessionPRJNA688628
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 30-Dec-2020
Huazhong Agricultural University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)527
WGS master518
Genomic DNA9
Protein Sequences4960
Other datasets
BioSample519
Assembly519
Assembly details:
Assembly levelNumber of Assemblies
1
518
519
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_019374975.1ContigJAENHA000000000
SAMN17183824
XD38
GCA_019374955.1ContigJAEOIW000000000
SAMN17183443
HB64
GCA_019374935.1ContigJAEPWL000000000
SAMN17183434
HB4
GCA_019374915.1ContigJAEOIX000000000
SAMN17183444
HB84
GCA_019374895.1ContigJAEOIY000000000
SAMN17183445
HLJ34
GCA_019374875.1ContigJAEOIZ000000000
SAMN17183446
HLJ5
GCA_019374845.1ContigJAEOJA000000000
SAMN17183447
HLJ64
GCA_019374825.1ContigJAEOJB000000000
SAMN17183448
HN15
GCA_019374815.1ContigJAEOJC000000000
SAMN17183449
HUBJ12
GCA_019374785.1ContigJAEOJD000000000
SAMN17183450
HUBJ16
GCA_019374775.1ContigJAEOJG000000000
SAMN17183453
HUBJ24
GCA_019374755.1ContigJAEOJE000000000
SAMN17183451
HUBJ20
GCA_019374705.1ContigJAEOJH000000000
SAMN17183454
HUBJ25
GCA_019374725.1ContigJAEOJI000000000
SAMN17183455
HUBJ28
GCA_019374695.1ContigJAEOLN000000000
SAMN17183512
HUN92
GCA_019374675.1ContigJAEOLL000000000
SAMN17183510
HUN89
GCA_019374655.1ContigJAEOJJ000000000
SAMN17183456
HUBJ30
GCA_019374635.1ContigJAEOLO000000000
SAMN17183513
HUN94
GCA_019374575.1ContigJAEOLQ000000000
SAMN17183515
HUNS32
GCA_019374585.1ContigJAEOLS000000000
SAMN17183517
HUNS34
GCA_019374595.1ContigJAEOLP000000000
SAMN17183514
HUNJ27
GCA_019374535.1ContigJAEOLU000000000
SAMN17183519
HUNS48
GCA_019374515.1ContigJAEOLW000000000
SAMN17183521
JS77
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SAMN17183524
JX13
GCA_019374495.1ContigJAEOLV000000000
SAMN17183520
JL33
GCA_019374455.1ContigJAEOLX000000000
SAMN17183522
JX10
GCA_019374435.1ContigJAEOLY000000000
SAMN17183523
JX12
GCA_019374405.1ContigJAEOMK000000000
SAMN17183537
JX42
GCA_019374395.1ContigJAEOMA000000000
SAMN17183525
JX16
GCA_019374375.1ContigJAEOMJ000000000
SAMN17183536
JX40
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SAMN17183538
JX45
GCA_019374325.1ContigJAEOMN000000000
SAMN17183540
LN13
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SAMN17183539
LN10
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SAMN17183542
LN35
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SAMN17183541
LN32
GCA_019374255.1ContigJAEOMQ000000000
SAMN17183543
LN36
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SAMN17183544
LN42
GCA_019374195.1ContigJAEOMT000000000
SAMN17183546
LN44
GCA_019374185.1ContigJAEOMU000000000
SAMN17183547
LN59
GCA_019374175.1ContigJAEOMS000000000
SAMN17183545
LN43
GCA_019374155.1ContigJAEOMV000000000
SAMN17183548
LN62
GCA_019374135.1ContigJAEOMW000000000
SAMN17183549
LN64
GCA_019374075.1ContigJAEONA000000000
SAMN17183553
LN75
GCA_019374085.1ContigJAEOMZ000000000
SAMN17183552
LN74
GCA_019374065.1ContigJAEOMY000000000
SAMN17183551
LN73
GCA_019374055.1ContigJAEOMX000000000
SAMN17183550
LN69
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SAMN17183554
NMG10
GCA_019374005.1ContigJAEONC000000000
SAMN17183555
NMG12
GCA_019373975.1ContigJAEOND000000000
SAMN17183556
NMG22
GCA_019373965.1ContigJAEONE000000000
SAMN17183557
NMG24
GCA_019373955.1ContigJAEONF000000000
SAMN17183558
NMG25
GCA_019373935.1ContigJAEONG000000000
SAMN17183559
NMG29
GCA_019373905.1ContigJAEONH000000000
SAMN17183560
NMG3
GCA_019373885.1ContigJAEONJ000000000
SAMN17183562
NMG39
GCA_019373875.1ContigJAEONI000000000
SAMN17183561
NMG32
GCA_019373855.1ContigJAEONL000000000
SAMN17183564
NMG46
GCA_019373835.1ContigJAEONK000000000
SAMN17183563
NMG42
GCA_019373795.1ContigJAEONN000000000
SAMN17183566
NMG48
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SAMN17183565
NMG47
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SAMN17183568
NMG5
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SAMN17183570
NMG6
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SAMN17183567
NMG49
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SAMN17183569
NMG50
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SAMN17183572
NMG8
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SAMN17183571
NMG7
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SAMN17183574
NX2
GCA_019373625.1ContigJAEONU000000000
SAMN17183573
NMG9
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SAMN17183575
NX28
GCA_019373575.1ContigJAEONZ000000000
SAMN17183578
QH12
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SAMN17183579
QH13
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SAMN17183577
QH10
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SAMN17183576
QH1
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SAMN17183580
QH17
GCA_019373475.1ContigJAEOOD000000000
SAMN17183582
QH2
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SAMN17183581
QH18
GCA_019373445.1ContigJAEOOG000000000
SAMN17183585
QH5
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SAMN17183583
QH3
GCA_019373405.1ContigJAEOOF000000000
SAMN17183584
QH4
GCA_019373385.1ContigJAEOOH000000000
SAMN17183586
QH6
GCA_019373305.1ContigJAEOOM000000000
SAMN17183591
S104
GCA_019373335.1ContigJAEOOI000000000
SAMN17183587
QH7
GCA_019373325.1ContigJAEOOJ000000000
SAMN17183588
QH8
GCA_019373315.1ContigJAEOOK000000000
SAMN17183589
QH9
GCA_019373285.1ContigJAEOOL000000000
SAMN17183590
S103
GCA_019373245.1ContigJAEOOO000000000
SAMN17183593
S158
GCA_019373255.1ContigJAEOON000000000
SAMN17183592
S147
GCA_019373225.1ContigJAEOOP000000000
SAMN17183594
S180
GCA_019373195.1ContigJAEOOR000000000
SAMN17183596
S182
GCA_019373185.1ContigJAEOOQ000000000
SAMN17183595
S181
GCA_019373165.1ContigJAEOOS000000000
SAMN17183597
S191
GCA_019373145.1ContigJAEOOT000000000
SAMN17183598
S192
GCA_019373125.1ContigJAEOOV000000000
SAMN17183600
S194
GCA_019373105.1ContigJAEOOU000000000
SAMN17183599
S193
GCA_019373085.1ContigJAEOOW000000000
SAMN17183601
S195
GCA_019373065.1ContigJAEOOX000000000
SAMN17183602
S196
GCA_019373045.1ContigJAEOOY000000000
SAMN17183603
S198
GCA_019373025.1ContigJAEOOZ000000000
SAMN17183604
S199
GCA_019373005.1ContigJAEOPB000000000
SAMN17183606
S201
GCA_019372985.1ContigJAEOPA000000000
SAMN17183605
S200
GCA_019372955.1ContigJAEOPC000000000
SAMN17183607
S203
GCA_019372945.1ContigJAEOPD000000000
SAMN17183608
S204
GCA_019372925.1ContigJAEOPE000000000
SAMN17183609
S205
GCA_019372905.1ContigJAEOPF000000000
SAMN17183610
S206
GCA_019372885.1ContigJAEOPG000000000
SAMN17183611
S208
GCA_019372835.1ContigJAEOPH000000000
SAMN17183612
S210
GCA_019372845.1ContigJAEOPJ000000000
SAMN17183614
S212
GCA_019372825.1ContigJAEOPI000000000
SAMN17183613
S211
GCA_019372805.1ContigJAEOPK000000000
SAMN17183615
S47
GCA_019372785.1ContigJAEOPL000000000
SAMN17183616
S49
GCA_019372765.1ContigJAEOPO000000000
SAMN17183619
S56
GCA_019372735.1ContigJAEOPN000000000
SAMN17183618
S52
GCA_019372705.1ContigJAEOPP000000000
SAMN17183620
S57
GCA_019372725.1ContigJAEOPM000000000
SAMN17183617
S51
GCA_019372685.1ContigJAEOPR000000000
SAMN17183622
S67
GCA_019372665.1ContigJAEOPQ000000000
SAMN17183621
S61
GCA_019372625.1ContigJAEOPS000000000
SAMN17183623
S70
GCA_019372635.1ContigJAEOPT000000000
SAMN17183624
S72
GCA_019372605.1ContigJAEOPU000000000
SAMN17183625
S73
GCA_019372585.1ContigJAEOPV000000000
SAMN17183626
S75
GCA_019372555.1ContigJAEOPX000000000
SAMN17183628
S78
GCA_019372545.1ContigJAEOPW000000000
SAMN17183627
S77
GCA_019372525.1ContigJAEOPY000000000
SAMN17183629
S79
GCA_019372495.1ContigJAEOPZ000000000
SAMN17183630
S82
GCA_019372485.1ContigJAEOQB000000000
SAMN17183632
S88
GCA_019372465.1ContigJAEOQA000000000
SAMN17183631
S87
GCA_019372445.1ContigJAEOQC000000000
SAMN17183633
S89
GCA_019372425.1ContigJAEOQD000000000
SAMN17183634
S91
GCA_019372405.1ContigJAEOQE000000000
SAMN17183635
S95
GCA_019372375.1ContigJAEOQG000000000
SAMN17183637
S99
GCA_019372365.1ContigJAEOQF000000000
SAMN17183636
S98
GCA_019372345.1ContigJAEOQH000000000
SAMN17183638
SAX11
GCA_019372325.1ContigJAEOQI000000000
SAMN17183639
SAX15
GCA_019372305.1ContigJAEOQJ000000000
SAMN17183640
SAX16
GCA_019372285.1ContigJAEOQK000000000
SAMN17183641
SAX2
GCA_019372255.1ContigJAEOQL000000000
SAMN17183642
SAX21
GCA_019372245.1ContigJAEOQM000000000
SAMN17183643
SAX22
GCA_019372225.1ContigJAEOQN000000000
SAMN17183644
SAX32
GCA_019372205.1ContigJAEOQO000000000
SAMN17183645
SAX35
GCA_019372185.1ContigJAEOQP000000000
SAMN17183646
SAX4
GCA_019372145.1ContigJAEOQR000000000
SAMN17183648
SAX6
GCA_019372155.1ContigJAEOQQ000000000
SAMN17183647
SAX40
GCA_019372125.1ContigJAENBK000000000
SAMN17183743
SC4
GCA_019372105.1ContigJAENBJ000000000
SAMN17183744
SD1
GCA_019372085.1ContigJAENBI000000000
SAMN17183745
SD10
GCA_019372055.1ContigJAENBG000000000
SAMN17183747
SD12
GCA_019372045.1ContigJAENBH000000000
SAMN17183746
SD11
GCA_019372025.1ContigJAENAU000000000
SAMN17183759
SD38
GCA_019372005.1ContigJAENAV000000000
SAMN17183758
SD37
GCA_019371965.1ContigJAENAS000000000
SAMN17183762
SD58
GCA_019371975.1ContigJAENAT000000000
SAMN17183760
SD40
GCA_019371945.1ContigJAENAR000000000
SAMN17183763
SD7
GCA_019371915.1ContigJAENAQ000000000
SAMN17183764
SH22
GCA_019371905.1ContigJAENAP000000000
SAMN17183765
SH30
GCA_019371885.1ContigJAENAO000000000
SAMN17183766
SH36
GCA_019371865.1ContigJAENAN000000000
SAMN17183767
SH40
GCA_019371845.1ContigJAENAM000000000
SAMN17183768
SH41
GCA_019371825.1ContigJAENAL000000000
SAMN17183769
SH43
GCA_019371805.1ContigJAENAK000000000
SAMN17183770
SH44
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SAMN17183771
SH46
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SAMN17183772
SH47
GCA_019371735.1ContigJAENAH000000000
SAMN17183773
SH48
GCA_019371725.1ContigJAENAG000000000
SAMN17183774
SH50
GCA_019371705.1ContigJAENAF000000000
SAMN17183775
SH51
GCA_019371685.1ContigJAENAE000000000
SAMN17183776
SH52
GCA_019371655.1ContigJAENAA000000000
SAMN17183780
SH57
GCA_019371635.1ContigJAENAD000000000
SAMN17183777
SH53
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SAMN17183778
SH55
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SAMN17183781
SH59
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SAMN17183779
SH56
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SAMN17183782
SH60
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SAMN17183783
SH63
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SAMN17183784
SH68
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SAMN17183786
SH71
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SAMN17183785
SH7
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SAMN17183788
SH79
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SAMN17183787
SH77
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SAMN17183790
SHB15
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SAMN17183791
SHB6
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SAMN17183789
SH90
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SAMN17183792
SX52
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SAMN17183794
TJ
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SAMN17183793
SX54
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SAMN17183796
TJ10
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TJ1
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TJ15
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TJ12
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SAMN17183801
TJ5
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SAMN17183800
TJ3
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SAMN17183799
TJ17
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TJ50
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SAMN17183803
TJ8
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SAMN17183518
HUNS46
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SAMN17183516
HUNS33
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SAMN17183742
SC3
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SAMN17183741
SC10
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SAMN17183749
SD16
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SAMN17183748
SD15
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SAMN17183752
SD23
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SAMN17183751
SD21
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SAMN17183750
SD2
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SD26
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SD28
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SD36
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SD35
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SD30
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SAMN17183761
SD5
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SAMN17183424
HB24
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HB17
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HB28
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HB61
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HUBJ22
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HUBJ8
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SAMN17183458
HUBS21
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SAMN17183459
HUBS24
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SAMN17183460
HUBS28
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SAMN17183461
HUBS36
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SAMN17183462
HUBS37
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SAMN17183463
HUBS5
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SAMN17183464
HUN101
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HUN105
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HUN103
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HUN107
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SAMN17183468
HUN108
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SAMN17183469
HUN109
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SAMN17183472
HUN112
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SAMN17183470
HUN11
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SAMN17183471
HUN111
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SAMN17183473
HUN113
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SAMN17183828
XD86
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SAMN17183831
XJ13
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SAMN17183832
XJ15
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SAMN17183830
XJ12
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SAMN17183833
XJ17
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SAMN17183834
XJ26
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SAMN17183835
XJ32
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SAMN17183836
XJ33
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SAMN17183838
XJ36
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SAMN17183837
XJ35
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XJ39
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ZJ1
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CQ17
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CQ16
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CQ2
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CQ21
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CQ25
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CQ22
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CQ26
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CQ27
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CQ28
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CQ29
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CQ3
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CQ31
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CQ32
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CQ30
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CQ33
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CQ34
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CQ35
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CQ36
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CQ42
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CQ4
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CQ46
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CQ48
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CQ52
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CQ63
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CQ59
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CQ66
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CQ7
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CQ67
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CQ72
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CQ73
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CQ78
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CQ74
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CQ75
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CQ8
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CQ9
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CQ80
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CQ92
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SAMN17183327
E_coli_RXD10
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E_coli_RXD5
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FJ26
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FJ38
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FY183
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FY119
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FY197
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FY187
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FY207
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FY209
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FY215
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FY213
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FY219
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FY217
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FY216
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FY228
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FY227
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SAMN17183346
FY237
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FY229
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SAMN17183345
FY230
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SAMN17183348
FY240
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SAMN17183347
FY239
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SAMN17183350
FY246
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SAMN17183353
FY251
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SAMN17183352
FY249
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SAMN17183349
FY241
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SAMN17183351
FY248
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SAMN17183356
FY256
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SAMN17183355
FY253
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SAMN17183354
FY252
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SAMN17183357
FY257
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SAMN17183358
FY261
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SAMN17183361
FY268
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SAMN17183359
FY262
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SAMN17183363
FY45
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SAMN17183362
FY44
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SAMN17183360
FY267
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SAMN17183364
FY48
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SAMN17183365
FY66
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SAMN17183366
FY74
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SAMN17183369
GS105
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SAMN17183368
GS100
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SAMN17183367
GD40
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SAMN17183370
GS123
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SAMN17183371
GS128
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SAMN17183374
GS16
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SAMN17183373
GS138
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GS133
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SAMN17183376
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SAMN17183375
GS191
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SAMN17183377
GS208
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SAMN17183382
GS35
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SAMN17183378
GS29
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SAMN17183380
GS33
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SAMN17183379
GS3
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SAMN17183381
GS34
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SAMN17183384
GS47
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SAMN17183383
GS4
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SAMN17183386
GS59
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SAMN17183385
GS58
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SAMN17183387
GS6
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SAMN17183388
GS61
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GS62
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SAMN17183390
GS72
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SAMN17183392
GS8
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SAMN17183391
GS78
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SAMN17183393
GS82
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GS86
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SAMN17183394
GS84
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SAMN17183395
GS85
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SAMN17183398
GS99
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SAMN17183397
GS93
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SAMN17183399
GX18
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SAMN17183400
GX29
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SAMN17183401
GX37
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SAMN17183402
GX38
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SAMN17183403
GZ10
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SAMN17183404
GZ12
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SAMN17183405
GZ16
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SAMN17183406
GZ18
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SAMN17183407
GZ29
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SAMN17183409
GZ34
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SAMN17183408
GZ31
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SAMN17183410
GZ40
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SAMN17183414
GZ64
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SAMN17183415
GZ86
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SAMN17183413
GZ55
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SAMN17183412
GZ51
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SAMN17183411
GZ43
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SAMN17183417
GZ9
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SAMN17183420
HB13
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SAMN17183418
GZ98
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SAMN17183419
HB11
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SAMN17183740
SC1
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SAMN17183422
HB22
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XD101
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SAMN17183804
XD1
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XD116
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XD2
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XD171
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XD23
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XD25
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XD3
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XD26
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SAMN17183820
XD34
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SAMN17183823
XD37
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XD40
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XD39
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HUN115
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HUN127
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HUN128
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HUN129
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HUN13
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HUN14
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HUN15
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HUN18
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HUN16
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HUN19
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HUN20
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SAMN17183486
HUN24
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SAMN17183485
HUN23
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SAMN17183487
HUN26
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SAMN17183488
HUN27
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SAMN17183489
HUN29
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SAMN17183490
HUN38
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SAMN17183493
HUN45
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HUN4
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SAMN17183491
HUN39
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SAMN17183494
HUN49
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SAMN17183495
HUN50
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SAMN17183496
HUN56
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SAMN17183497
HUN58
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SAMN17183498
HUN59
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SAMN17183500
HUN71
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SAMN17183502
HUN75
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SAMN17183499
HUN7
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SAMN17183501
HUN72
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SAMN17183503
HUN77
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SAMN17183505
HUN8
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SAMN17183507
HUN82
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SAMN17183504
HUN78
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SAMN17183508
HUN83
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SAMN17183506
HUN80
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SAMN17183509
HUN84
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SAMN17183529
JX21
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SAMN17183526
JX18
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SAMN17183511
HUN9
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SAMN17183530
JX23
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JX38
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JX4
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JX26
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SAMN17183534
JX39
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SAMN17183531
JX25
GCA_019375055.2Complete genomeSAMN17183821
XD35
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SAMN17183416
GZ89
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SAMN17183805
XD100
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SAMN17183807
XD11
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SAMN17183808
XD115
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SAMN17183810
XD12
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SAMN17183813
XD20
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SAMN17183815
XD24
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SAMN17183819
XD33
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SAMN17183822
XD36
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SAMN17183827
XD7
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SAMN17183829
XD97
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SAMN17183528
JX20
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SAMN17183527
JX19

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