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Accession: PRJNA668816 ID: 668816

Waiwera River metagenomic sequencing and assembly

We study the community dynamics and nutrient acquisition strategies in benthic sediments and the overlying water column across a stream to marine transect.
AccessionPRJNA668816
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismriverine metagenome[Taxonomy ID: 1646512]
unclassified sequences; metagenomes; ecological metagenomes; riverine metagenome
Grants
  • "Stream microbiology and environmental genomics" (Grant ID 1806, Genomics Aotearoa, Ministry of Business, Innovation and Employment)
SubmissionRegistration date: 12-Aug-2022
Handley Lab, University of Auckland
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)335
SRA Experiments66
Other datasets
BioSample353
Assembly335
Assembly details:
Assembly levelNumber of Assemblies
330
5
335
AssemblyLevelWGSBioSampleIsolateTaxonomy
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GCA_024642765.1ScaffoldJAHEAM000000000SAMN19289814
Ww107
GCA_024642735.1ScaffoldJAHEAN000000000SAMN19289815
Ww108
GCA_024642205.1ScaffoldJAHEBQ000000000SAMN19289844
Ww147
GCA_024639105.1ScaffoldJAHEIY000000000SAMN19290034
Ww524
GCA_024638965.1ScaffoldJAHEJI000000000SAMN19290044
Ww544
GCA_024645305.1ScaffoldJAHEFU000000000SAMN19289952
Ww346
GCA_024641365.1ScaffoldJAHEDF000000000SAMN19289885
Ww190
GCA_024639415.1ScaffoldJAHEIK000000000SAMN19290020
Ww498
GCA_024643855.1ScaffoldJAHEMD000000000SAMN19290117
Ww649
GCA_024645145.1ScaffoldJAHEGL000000000SAMN19289969
Ww402
GCA_024639685.1ScaffoldJAHEHX000000000SAMN19290007
Ww478
GCA_024642065.1ScaffoldJAHEBW000000000SAMN19289850
Ww153
GCA_024639885.1ScaffoldJAHEGD000000000SAMN19289961
Ww380
GCA_024644625.1ScaffoldJAHEHK000000000SAMN19289994
Ww452
GCA_024644595.1ScaffoldJAHEHL000000000SAMN19289995
Ww453
GCA_024644585.1ScaffoldJAHEHM000000000SAMN19289996
Ww454
GCA_024640785.1ScaffoldJAHEEI000000000SAMN19289914
Ww263
GCA_024639525.1ScaffoldJAHEIF000000000SAMN19290015
Ww49
GCA_024642045.1ScaffoldJAHEBX000000000SAMN19289851
Ww154
GCA_024641255.1ScaffoldJAHEDL000000000SAMN19289891
Ww20
GCA_024639705.1ScaffoldJAHEHT000000000SAMN19290003
Ww467
GCA_024639515.1ScaffoldJAHEIG000000000SAMN19290016
Ww491
GCA_024645085.1ScaffoldJAHEGN000000000SAMN19289971
Ww409
GCA_024645105.1ScaffoldJAHEGM000000000SAMN19289970
Ww405
GCA_024641095.1ContigJAHEDR000000000SAMN19289897
Ww21
GCA_024641065.1ScaffoldJAHEDV000000000SAMN19289901
Ww23
GCA_024641985.1ScaffoldJAHEBZ000000000SAMN19289853
Ww157
GCA_024639375.1ScaffoldJAHEIM000000000SAMN19290022
Ww50
GCA_024644085.1ScaffoldJAHELS000000000SAMN19290106
Ww632
GCA_024644325.1ScaffoldJAHELF000000000SAMN19290093
Ww610
GCA_024640685.1ScaffoldJAHEEN000000000SAMN19289919
Ww273
GCA_024640695.1ScaffoldJAHEEM000000000SAMN19289918
Ww272
GCA_024638465.1ScaffoldJAHEKF000000000SAMN19290067
Ww577
GCA_024638475.1ScaffoldJAHEKG000000000SAMN19290068
Ww578
GCA_024638585.1ScaffoldJAHEKA000000000SAMN19290062
Ww571
GCA_024640665.1ScaffoldJAHEEO000000000SAMN19289920
Ww274
GCA_024644185.1ScaffoldJAHELM000000000SAMN19290100
Ww62
GCA_024643915.1ScaffoldJAHEMB000000000SAMN19290115
Ww644
GCA_024642005.1ScaffoldJAHECA000000000SAMN19289854
Ww158
GCA_024638915.1ScaffoldJAHEJJ000000000SAMN19290045
Ww548
GCA_024639605.1ScaffoldJAHEHZ000000000SAMN19290009
Ww482
GCA_024639085.1ScaffoldJAHEJB000000000SAMN19290037
Ww533
GCA_024641965.1ScaffoldJAHECC000000000SAMN19289856
Ww160
GCA_024641945.1ScaffoldJAHECD000000000SAMN19289857
Ww161
GCA_024639745.1ScaffoldJAHEHW000000000SAMN19290006
Ww476
GCA_024642645.1ScaffoldJAHEAS000000000SAMN19289820
Ww119
GCA_024643325.1ScaffoldJAHEND000000000SAMN19290143
Ww92
GCA_024644705.1ScaffoldJAHEHH000000000SAMN19289991
Ww445
GCA_024640595.1ScaffoldJAHEES000000000SAMN19289924
Ww288
GCA_024645045.1ScaffoldJAHEGO000000000SAMN19289972
Ww41
GCA_024640465.1ScaffoldJAHEEX000000000SAMN19289929
Ww30
GCA_024640385.1ScaffoldJAHEFC000000000SAMN19289934
Ww31
GCA_024642285.1ScaffoldJAHEBJ000000000SAMN19289837
Ww137
GCA_024645025.1ScaffoldJAHEGQ000000000SAMN19289974
Ww42
GCA_024642845.1ScaffoldJAHEAJ000000000SAMN19289811
Ww1
GCA_024640765.1ScaffoldJAHEEK000000000SAMN19289916
Ww266
GCA_024643305.1ScaffoldJAHENE000000000SAMN19290144
Ww98
GCA_024638735.1ScaffoldJAHEJS000000000SAMN19290054
Ww560
GCA_024642575.1ScaffoldJAHEBB000000000SAMN19289829
Ww127
GCA_024641565.1ScaffoldJAHECU000000000SAMN19289874
Ww179
GCA_024641425.1ScaffoldJAHEDC000000000SAMN19289882
Ww187
GCA_024638765.1ScaffoldJAHEJT000000000SAMN19290055
Ww561
GCA_024640365.1ScaffoldJAHEFE000000000SAMN19289936
Ww311
GCA_024640345.1ScaffoldJAHEFD000000000SAMN19289935
Ww310
GCA_024640315.1ScaffoldJAHEFF000000000SAMN19289937
Ww312
GCA_024639975.1ScaffoldJAHEFX000000000SAMN19289955
Ww353
GCA_024641325.1ScaffoldJAHEDJ000000000SAMN19289889
Ww198
GCA_024641305.1ScaffoldJAHEDI000000000SAMN19289888
Ww197
GCA_024641285.1ScaffoldJAHEDH000000000SAMN19289887
Ww195
GCA_024639335.1ScaffoldJAHEIN000000000SAMN19290023
Ww501
GCA_024638655.1ScaffoldJAHEJW000000000SAMN19290058
Ww567
SRA Data Details
ParameterValue
Data volume, Gbases1,638
Data volume, Tbytes0.68

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