cellular organisms (ID 745103) - BioProject

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Accession: PRJDB11902 ID: 745103

cellular organisms

Isolate bacteria and archaea from a Japanese centenarian

We have isolated 66 strains of bacteria and 2 strains of archaea from a Japanese centenarian using Brucella agar plate with haemin, Vitamin K1 (BHK) agar, BHK agar containing paramomycin and vancomycin, and reinforced clostridial (RC) agar under anaerobic conditions. More...

Accession	PRJDB11902
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 8-Jul-2021 Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	445
WGS master	38
Genomic DNA	30
SRA Experiments	136
Protein Sequences	262371
Other datasets
BioSample	68
Assembly	68

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

30
38
68

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_022835455.1	BQOI00000000		SAMD00389905	CE91-St27	Akkermansia muciniphila
GCA_022835435.1	BQOH00000000		SAMD00389904	CE91-St26	Akkermansia muciniphila
GCA_022846055.1		1	SAMD00389901	CE91-St15	Alistipes finegoldii
GCA_022835515.1	BQOL00000000		SAMD00389912	CE91-St16	Alistipes finegoldii
GCA_022834935.1	BQNI00000000		SAMD00389856	CE91-St17	Alistipes onderdonkii
GCA_022845675.1		1	SAMD00389858	CE91-St18	Alistipes onderdonkii
GCA_022835035.1	BQNN00000000		SAMD00389875	CE91-St8	Bacteroides thetaiotaomicron
GCA_022835255.1	BQNY00000000		SAMD00389888	CE91-St9	Bacteroides thetaiotaomicron
GCA_022835115.1	BQNR00000000		SAMD00389880	CE91-St13	Bacteroides uniformis
GCA_022835075.1	BQNP00000000		SAMD00389878	CE91-St11	Bacteroides uniformis
GCA_022835055.1	BQNO00000000		SAMD00389877	CE91-St10	Bacteroides uniformis
GCA_022834995.1	BQNL00000000		SAMD00389871	CE91-St12	Bacteroides uniformis
GCA_022835215.1	BQNW00000000		SAMD00389886	CE91-St25	Campylobacter ureolyticus
GCA_022846035.1		1	SAMD00389900	CE91-St37	Christensenellaceae bacterium
GCA_022846015.1		1	SAMD00389899	CE91-St36	Christensenellaceae bacterium
GCA_022845595.1		1	SAMD00389847	CE91-St50	Clostridioides difficile
GCA_022835015.1	BQNM00000000		SAMD00389872	CE91-St29	Corynebacterium striatum
GCA_022835475.1	BQOJ00000000		SAMD00389907	CE91-St39	Desulfovibrionaceae bacterium
GCA_022834915.1	BQNH00000000		SAMD00389854	CE91-St38	Desulfovibrionaceae bacterium
GCA_022834875.1	BQNF00000000		SAMD00389851	CE91-St35	Eggerthella lenta
GCA_022834855.1	BQNE00000000		SAMD00389850	CE91-St34	Eggerthella lenta
GCA_022845935.1		1	SAMD00389876	CE91-St33	Eggerthella lenta
GCA_022845795.1		1	SAMD00389866	CE91-St49	Emergencia timonensis
GCA_022845775.1		1	SAMD00389865	CE91-St48	Emergencia timonensis
GCA_022835175.1	BQNU00000000		SAMD00389884	CE91-St46	Eubacteriales bacterium
GCA_022835235.1	BQNX00000000		SAMD00389887	CE91-St47	Eubacteriales bacterium
GCA_022835095.1	BQNQ00000000		SAMD00389879	CE91-St64	Faecalicatena contorta
GCA_022834895.1	BQNG00000000		SAMD00389852	CE91-St32	Gordonibacter pamelaeae
GCA_022834975.1	BQNK00000000		SAMD00389863	CE91-St54	Hungatella hathewayi
GCA_022834955.1	BQNJ00000000		SAMD00389862	CE91-St55	Hungatella hathewayi
GCA_022845915.1		1	SAMD00389874	CE91-St62	Lachnospiraceae bacterium
GCA_022845895.1		1	SAMD00389873	CE91-St61	Lachnospiraceae bacterium
GCA_022845955.1		1	SAMD00389883	CE91-St56	Lachnospiraceae bacterium
GCA_022835195.1	BQNV00000000		SAMD00389885	CE91-St58	Lachnospiraceae bacterium
GCA_022835135.1	BQNS00000000		SAMD00389881	CE91-St57	Lachnospiraceae bacterium
GCA_022846175.1		1	SAMD00389910	CE91-St68	Methanobrevibacter smithii
GCA_022846155.1		1	SAMD00389909	CE91-St67	Methanobrevibacter smithii
GCA_022835555.1	BQON00000000		SAMD00389914	CE91-St20	Odoribacter laneus
GCA_022835535.1	BQOM00000000		SAMD00389913	CE91-St19	Odoribacter laneus
GCA_022835415.1	BQOG00000000		SAMD00389898	CE91-St24	Odoribacteraceae bacterium
GCA_022835395.1	BQOF00000000		SAMD00389897	CE91-St22	Odoribacteraceae bacterium
GCA_022835375.1	BQOE00000000		SAMD00389895	CE91-St23	Odoribacteraceae bacterium
GCA_022845995.1		1	SAMD00389896	CE91-St21	Odoribacteraceae bacterium
GCA_022835495.1	BQOK00000000		SAMD00389911	CE91-St44	Oscillospiraceae bacterium
GCA_022835155.1	BQNT00000000		SAMD00389882	CE91-St45	Oscillospiraceae bacterium
GCA_022846115.1		1	SAMD00389906	CE91-St41	Oscillospiraceae bacterium
GCA_022846095.1		1	SAMD00389903	CE91-St40	Oscillospiraceae bacterium
GCA_022846075.1		1	SAMD00389902	CE91-St43	Oscillospiraceae bacterium
GCA_022845655.1		1	SAMD00389857	CE91-St42	Oscillospiraceae bacterium
GCA_022835355.1	BQOD00000000		SAMD00389894	CE91-St5	Parabacteroides distasonis
GCA_022835335.1	BQOC00000000		SAMD00389893	CE91-St4	Parabacteroides distasonis
GCA_022834835.1	BQND00000000		SAMD00389849	CE91-St2	Parabacteroides goldsteinii
GCA_022834815.1	BQNC00000000		SAMD00389848	CE91-St1	Parabacteroides goldsteinii
GCA_022835275.1	BQNZ00000000		SAMD00389890	CE91-St3	Parabacteroides merdae
GCA_022845635.1		1	SAMD00389855	CE91-St52	Phascolarctobacterium faecium
GCA_022845695.1		1	SAMD00389859	CE91-St53	Phascolarctobacterium faecium
GCA_022835315.1	BQOB00000000		SAMD00389892	CE91-St7	Phocaeicola dorei
GCA_022835295.1	BQOA00000000		SAMD00389891	CE91-St6	Phocaeicola dorei
GCA_022845615.1		1	SAMD00389853	CE91-St14	Porphyromonas somerae
GCA_022846135.1		1	SAMD00389908	CE91-St28	Pyramidobacter piscolens
GCA_022845975.1		1	SAMD00389889	CE91-St31	Raoultibacter timonensis
GCA_022845715.1		1	SAMD00389860	CE91-St30	Raoultibacter timonensis
GCA_022845755.1		1	SAMD00389864	CE91-St63	[Clostridium] hylemonae
GCA_022845735.1		1	SAMD00389861	CE91-St51	[Clostridium] innocuum
GCA_022845835.1		1	SAMD00389868	CE91-St60	[Clostridium] scindens
GCA_022845815.1		1	SAMD00389867	CE91-St59	[Clostridium] scindens
GCA_022845875.1		1	SAMD00389870	CE91-St66	[Clostridium] symbiosum
GCA_022845855.1		1	SAMD00389869	CE91-St65	[Clostridium] symbiosum

SRA Data Details

Parameter	Value
Data volume, Gbases	129
Data volume, Mbytes	51114

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cellular organisms

Isolate bacteria and archaea from a Japanese centenarian

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