Sediments from a vernal pool in Lake County, CA (ID 728365) - BioProject

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Accession: PRJNA728365 ID: 728365

Sediments from a vernal pool in Lake County, CA

Sediments from a vernal pool in Lake County, CA Genome sequencing and assembly

The sediments of a seasonal vernal pool found in Lake County, CA, USA were sampled at various soil depths, DNA and RNA were extracted and sequenced with Illumina NovaSeq. Genomes from metagenomes were assembled and binned from metagenomic DNA.

Accession	PRJNA728365
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater sediment metagenome[Taxonomy ID: 556182] unclassified sequences; metagenomes; ecological metagenomes; freshwater sediment metagenome
Submission	Registration date: 20-Sep-2021 Jill Banfield's Lab at Berkeley

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	46
SRA Experiments	43
Other datasets
BioSample	85
Assembly	46

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

14
32
46

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_020072815.1	JAIQGE000000000	SAMN20254041	SRVP_46	Terriglobia bacterium
GCA_020073705.1	JAIQES000000000	SAMN20254008	SRVP_13	Terriglobia bacterium
GCA_020072565.1	JAIQGI000000000	SAMN20254035	SRVP_40	Terriglobia bacterium
GCA_020073665.1	JAIQEU000000000	SAMN20253996	SRVP_1	Terriglobia bacterium
GCA_020073645.1	JAIQET000000000	SAMN20254012	SRVP_17	Terriglobia bacterium
GCA_020073615.1	JAIQEX000000000	SAMN20254022	SRVP_27	Terriglobia bacterium
GCA_020073605.1	JAIQEW000000000	SAMN20254014	SRVP_19	Terriglobia bacterium
GCA_020073585.1	JAIQEV000000000	SAMN20254021	SRVP_26	Terriglobia bacterium
GCA_020073565.1	JAIQEY000000000	SAMN20254007	SRVP_12	Terriglobia bacterium
GCA_020073545.1	JAIQEZ000000000	SAMN20254004	SRVP_9	Terriglobia bacterium
GCA_020073525.1	JAIQFA000000000	SAMN20254013	SRVP_18	Terriglobia bacterium
GCA_020073495.1	JAIQFD000000000	SAMN20253997	SRVP_2	Terriglobia bacterium
GCA_020073485.1	JAIQFB000000000	SAMN20254010	SRVP_15	Terriglobia bacterium
GCA_020073465.1	JAIQFC000000000	SAMN20254002	SRVP_7	Terriglobia bacterium
GCA_020073445.1	JAIQFE000000000	SAMN20254005	SRVP_10	Terriglobia bacterium
GCA_020073395.1	JAIQFF000000000	SAMN20254018	SRVP_23	Terriglobia bacterium
GCA_020073385.1	JAIQFH000000000	SAMN20253999	SRVP_4	Terriglobia bacterium
GCA_020073375.1	JAIQFG000000000	SAMN20254016	SRVP_21	Terriglobia bacterium
GCA_020073365.1	JAIQFL000000000	SAMN20254011	SRVP_16	Terriglobia bacterium
GCA_020073345.1	JAIQFI000000000	SAMN20254000	SRVP_5	Terriglobia bacterium
GCA_020073325.1	JAIQFJ000000000	SAMN20254020	SRVP_25	Terriglobia bacterium
GCA_020073305.1	JAIQFK000000000	SAMN20254006	SRVP_11	Terriglobia bacterium
GCA_020073285.1	JAIQFM000000000	SAMN20254017	SRVP_22	Terriglobia bacterium
GCA_020073265.1	JAIQFN000000000	SAMN20254001	SRVP_6	Terriglobia bacterium
GCA_020073245.1	JAIQFQ000000000	SAMN20254009	SRVP_14	Terriglobia bacterium
GCA_020073215.1	JAIQFO000000000	SAMN20254003	SRVP_8	Terriglobia bacterium
GCA_020073205.1	JAIQFR000000000	SAMN20254019	SRVP_24	Terriglobia bacterium
GCA_020073185.1	JAIQFT000000000	SAMN20254039	SRVP_44	Terriglobia bacterium
GCA_020073165.1	JAIQFP000000000	SAMN20253998	SRVP_3	Terriglobia bacterium
GCA_020073145.1	JAIQFS000000000	SAMN20254038	SRVP_43	Terriglobia bacterium
GCA_020073115.1	JAIQFU000000000	SAMN20254026	SRVP_31	Terriglobia bacterium
GCA_020073105.1	JAIQFW000000000	SAMN20254027	SRVP_32	Terriglobia bacterium
GCA_020073085.1	JAIQFV000000000	SAMN20254032	SRVP_37	Terriglobia bacterium
GCA_020073015.1	JAIQFZ000000000	SAMN20254036	SRVP_41	Terriglobia bacterium
GCA_020073005.1	JAIQFX000000000	SAMN20254031	SRVP_36	Terriglobia bacterium
GCA_020072965.1	JAIQFY000000000	SAMN20254034	SRVP_39	Terriglobia bacterium
GCA_020072925.1	JAIQGA000000000	SAMN20254024	SRVP_29	Terriglobia bacterium
GCA_020072905.1	JAIQGB000000000	SAMN20254023	SRVP_28	Terriglobia bacterium
GCA_020072845.1	JAIQGF000000000	SAMN20254037	SRVP_42	Terriglobia bacterium
GCA_020072805.1	JAIQGC000000000	SAMN20254028	SRVP_33	Terriglobia bacterium
GCA_020072765.1	JAIQGD000000000	SAMN20254030	SRVP_35	Terriglobia bacterium
GCA_020072785.1	JAIQGG000000000	SAMN20254029	SRVP_34	Terriglobia bacterium
GCA_020072655.1	JAIQGH000000000	SAMN20254025	SRVP_30	Terriglobia bacterium
GCA_020072645.1	JAIQGK000000000	SAMN20254040	S2	Terriglobia bacterium
GCA_020072595.1	JAIQGJ000000000	SAMN20254015	S1	Terriglobia bacterium
GCA_020072585.1	JAIQGL000000000	SAMN20254033	S3	Terriglobia bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	493
Data volume, Tbytes	0.18

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Sediments from a vernal pool in Lake County, CA

Sediments from a vernal pool in Lake County, CA Genome sequencing and assembly

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