Warning: The NCBI web site requires JavaScript to function. more...

BioProject

Organizing biological data

Result Filters

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from BioSample

Accession: PRJNA820565 ID: 820565

estuary metagenome

Lacustrine Thaumarchaea Genome Sequencing and Assembly Project

Postglacial adaptations enabled colonization and quasi-clonal dispersal of specialized archaea in modern European large lakes

Accession	PRJNA820565
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	estuary metagenome[Taxonomy ID: 1649191] unclassified sequences; metagenomes; ecological metagenomes; estuary metagenome
Publications (total 3) Less...	Ngugi DK et al., "Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes.", Sci Adv, 2023 Feb 3;9(5):eadc9392 More... Ngugi DK et al., "Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes.", Sci Adv, 2023 Feb 3;9(5):eadc9392 Klotz F et al., "Quantification of archaea-driven freshwater nitrification from single cell to ecosystem levels.", ISME J, 2022 Jun;16(6):1647-1656 Herber J et al., "A single Thaumarchaeon drives nitrification in deep oligotrophic Lake Constance.", Environ Microbiol, 2020 Jan;22(1):212-228 Less...
Submission	Registration date: 2-Feb-2023 Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	17
SRA Experiments	5
Publications
PubMed	3
PMC	2
Other datasets
BioSample	22
Assembly	17

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

2
15
17

Assembly	Level	WGS	BioSample	Isolate	Taxonomy
GCA_028439745.1		JALJEZ000000000	SAMN27016901	WH13032018_MBin32	Candidatus Nitrosopumilus limneticus
GCA_028439735.1		JALJEX000000000	SAMN27016899	WH19122017_MBin55_RA	Candidatus Nitrosopumilus limneticus
GCA_028439725.1		JALJEY000000000	SAMN27016900	WH06022018_MBin11_RA	Candidatus Nitrosopumilus limneticus
GCA_028439705.1		JALJFA000000000	SAMN27016902	WH220518_MBin94	Candidatus Nitrosopumilus limneticus
GCA_028439665.1		JALJFC000000000	SAMN27016904	WH110918_MBin84	Candidatus Nitrosopumilus limneticus
GCA_028439655.1		JALJFD000000000	SAMN27016905	WH221018_MBin102	Candidatus Nitrosopumilus limneticus
GCA_028439635.1		JALJFE000000000	SAMN27016906	WH181218_MBin154	Candidatus Nitrosopumilus limneticus
GCA_028439625.1		JALJFB000000000	SAMN27016903	WH17072018_MBin39_RA	Candidatus Nitrosopumilus limneticus
GCA_028439605.1		JALJFF000000000	SAMN27016898	WH21112017_MBin119_PH	Candidatus Nitrosopumilus limneticus
GCA_029303275.1		DAJVOP000000000	SAMN31014984	CAS150M-72	Nitrosopumilus sp.
GCA_029303235.1		DAJVOO000000000	SAMN31014983	CAS150M-191	Nitrosopumilus sp.
GCA_029303145.1		DAJVOQ000000000	SAMN31014985	CAS15M-79	Nitrosopumilus sp.
GCA_029303115.1		DAJVOR000000000	SAMN31014986	CAS50M-5	Nitrosopumilus sp.
GCA_029250275.1		JAPFBP000000000	SAMN27410124	LakeHoare18m_MBin21	Nitrosopumilus sp.
GCA_028439825.1		JAMHKV000000000	SAMN27035756	BS16-187	Nitrosopumilus sp.
GCA_028439805.1		JAMHKW000000000	SAMN27035757	BS17-112	Nitrosopumilus sp.
GCA_028439755.1		JAMHKX000000000	SAMN27035758	BS18OX-181	Nitrosopumilus sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	145
Data volume, Mbytes	45870

Supplemental Content

Related information

Assembly
All related Assemblies
BioSample
All related BioSamples
Full text in PMC
PMC links
Genome
Related Genomes
Nucleotide
Related Nucleotide entry
PubMed
PubMed Links
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

Recent activity

Clear Turn Off Turn On

estuary metagenome
estuary metagenome
Lacustrine Thaumarchaea Genome Sequencing and Assembly Project

BioProject
BioProject Links for BioSample (Select 27016904) (1)
BioProject
Component(Core) Links for Nucleotide (Select 1394333984) (3)
Nucleotide
Taxonomy Links for Nucleotide (Select 237858686) (1)
Taxonomy
Concise Conserved Domain Links for Protein (Select 327507754) (2)
Conserved Domains

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI