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Accession: PRJNA872498 ID: 872498

anaerobic digester metagenome

Study of bacteria, archaea, and viruses in anaerobic digesters

The genomic and viral DNA was extracted and sequenced from the anaerobically digested sludge samples in three full-scale wastewater treatment facilities in the United States. The bacterial, archaeal, and viral ecology was studied.
AccessionPRJNA872498
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismanaerobic digester metagenome[Taxonomy ID: 1263854]
unclassified sequences; metagenomes; ecological metagenomes; anaerobic digester metagenome
SubmissionRegistration date: 20-Nov-2023
University of Utah
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)273
SRA Experiments6
Other datasets
BioSample276
Assembly273
Assembly details:
Assembly levelNumber of Assemblies
252
21
273
AssemblyLevelWGSBioSampleIsolateTaxonomy
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GCA_033813655.1ScaffoldJAPXRH000000000SAMN30661568
binned_ad_9.117
GCA_033813135.1ContigJAPXSH000000000SAMN30661594
binned_ad_9.165
GCA_033813575.1ScaffoldJAPXRK000000000SAMN30661571
binned_ad_9.123
GCA_033811295.1ScaffoldJAPXOV000000000SAMN30661504
binned_ad_7.174
GCA_033811255.1ScaffoldJAPXOY000000000SAMN30661507
binned_ad_7.180
GCA_033810355.1ScaffoldJAPXQO000000000SAMN30661549
binned_ad_7.86
GCA_033811675.1ScaffoldJAPXOB000000000SAMN30661484
binned_ad_7.126
GCA_033812055.1ScaffoldJAPXUM000000000SAMN30661651
binned_ad_9.94
GCA_033812145.1ContigJAPXUF000000000SAMN30661644
binned_ad_9.84
GCA_033812615.1ScaffoldJAPXTI000000000SAMN30661621
binned_ad_9.27
GCA_033812695.1ScaffoldJAPXTE000000000SAMN30661617
binned_ad_9.229
GCA_033812575.1ScaffoldJAPXTK000000000SAMN30661623
binned_ad_9.35
GCA_033812955.1ScaffoldJAPXSS000000000SAMN30661605
binned_ad_9.201
GCA_033813155.1ScaffoldJAPXSG000000000SAMN30661593
binned_ad_9.164
GCA_033812635.1ScaffoldJAPXTG000000000SAMN30661619
binned_ad_9.233
GCA_033810295.1ScaffoldJAPXKF000000000SAMN30469780
binned_ad_5.101
GCA_033810125.1ScaffoldJAPXKK000000000SAMN30469785
binned_ad_5.109
GCA_033812875.1ScaffoldJAPXSW000000000SAMN30661609
binned_ad_9.210
GCA_033812675.1ScaffoldJAPXTF000000000SAMN30661618
binned_ad_9.232
GCA_033810495.1ScaffoldJAPXQJ000000000SAMN30661544
binned_ad_7.77
GCA_033811935.1ScaffoldJAPXNQ000000000SAMN30661473
binned_ad_7.102
GCA_033813275.1ScaffoldJAPXSB000000000SAMN30661588
binned_ad_9.151
GCA_033809935.1ScaffoldJAPXKT000000000SAMN30469794
binned_ad_5.122
GCA_033811475.1ScaffoldJAPXOO000000000SAMN30661497
binned_ad_7.159
GCA_033813675.1ScaffoldJAPXRG000000000SAMN30661567
binned_ad_9.116
GCA_033812475.1ScaffoldJAPXTQ000000000SAMN30661629
binned_ad_9.56
GCA_033812595.1ScaffoldJAPXTJ000000000SAMN30661622
binned_ad_9.32
GCA_033813515.1ScaffoldJAPXRQ000000000SAMN30661577
binned_ad_9.134
GCA_033810715.1ScaffoldJAPXPY000000000SAMN30661533
binned_ad_7.58
GCA_033809995.1ScaffoldJAPXKQ000000000SAMN30469791
binned_ad_5.115
GCA_033809155.1ScaffoldJAPXMF000000000SAMN30469832
binned_ad_5.47
GCA_033808495.1ScaffoldJAPXNN000000000SAMN30469866
binned_ad_5.97
GCA_033809735.1ScaffoldJAPXLE000000000SAMN30469805
binned_ad_5.144
GCA_033812435.1ScaffoldJAPXTS000000000SAMN30661631
binned_ad_9.59
GCA_033810015.1ScaffoldJAPXKP000000000SAMN30469790
binned_ad_5.114
GCA_033810235.1ScaffoldJAPXQW000000000SAMN30661557
binned_ad_7.99
GCA_033810435.1ScaffoldJAPXQK000000000SAMN30661545
binned_ad_7.78
GCA_033811135.1ScaffoldJAPXPE000000000SAMN30661513
binned_ad_7.193
GCA_033813355.1ScaffoldJAPXRW000000000SAMN30661583
binned_ad_9.146
GCA_033813875.1ScaffoldJAPXQX000000000SAMN30661558
binned_ad_9.101
GCA_033812935.1ScaffoldJAPXSR000000000SAMN30661604
binned_ad_9.197
GCA_033810655.1ScaffoldJAPXPZ000000000SAMN30661534
binned_ad_7.59
GCA_033813935.1ScaffoldJAPZBZ000000000SAMN30467673
-
GCA_033813915.1ScaffoldJAPZCA000000000SAMN30467696
-
GCA_033813855.1ScaffoldJAPZCB000000000SAMN30467697
-
GCA_033813435.1ScaffoldJAPXRR000000000SAMN30661578
binned_ad_9.135
GCA_033812495.1ScaffoldJAPXTN000000000SAMN30661626
binned_ad_9.5
GCA_033810755.1ScaffoldJAPXPV000000000SAMN30661530
binned_ad_7.51
GCA_033811395.1ScaffoldJAPXOQ000000000SAMN30661499
binned_ad_7.161
GCA_033811355.1ScaffoldJAPXOT000000000SAMN30661502
binned_ad_7.170
GCA_033809615.1ScaffoldJAPXLJ000000000SAMN30469810
binned_ad_5.151
SRA Data Details
ParameterValue
Data volume, Gbases251
Data volume, Mbytes82576

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