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Accession: PRJNA875074 ID: 875074

Prediction of antimicrobial resistance in enterococci by whole-genome sequencing

The aim of this study was to investigate the concordance between WGS-based resistance prediction and phenotypic AST results for enterococcal clinical isolates using publicly-available tools and databases.
AccessionPRJNA875074
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 30-Aug-2022
CHU de Rennes
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)172
Other datasets
BioSample172
Assembly172
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
172
172
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_025482845.1ContigJANZQK000000000SAMN30596892
18-105
Enterococcus faecalis
GCA_025482835.1ContigJANZQI000000000SAMN30596890
17-199
Enterococcus faecalis
GCA_025482775.1ContigJANZQM000000000SAMN30596894
18-243
Enterococcus faecalis
GCA_025482785.1ContigJANZQL000000000SAMN30596893
18-187Ra
Enterococcus faecalis
GCA_025482795.1ContigJANZQJ000000000SAMN30596891
17-465
Enterococcus faecalis
GCA_025482755.1ContigJANZQN000000000SAMN30596895
18-275
Enterococcus faecalis
GCA_025482715.1ContigJANZQP000000000SAMN30596897
18-684
Enterococcus faecalis
GCA_025482725.1ContigJANZQO000000000SAMN30596896
18-499
Enterococcus faecalis
GCA_025482695.1ContigJANZQQ000000000SAMN30596898
19-031
Enterococcus faecalis
GCA_025482675.1ContigJANZQR000000000SAMN30596899
19-035
Enterococcus faecalis
GCA_025482575.1ContigJANZRA000000000SAMN30596908
19-506
Enterococcus faecalis
GCA_025482595.1ContigJANZQV000000000SAMN30596903
19-1137
Enterococcus faecalis
GCA_025482555.1ContigJANZQZ000000000SAMN30596907
19-390
Enterococcus faecalis
GCA_025482535.1ContigJANZQW000000000SAMN30596904
19-1171
Enterococcus faecalis
GCA_025482515.1ContigJANZQX000000000SAMN30596905
19-1172
Enterococcus faecalis
GCA_025482495.1ContigJANZQY000000000SAMN30596906
19-242
Enterococcus faecalis
GCA_025482635.1ContigJANZQT000000000SAMN30596901
19-1070
Enterococcus faecalis
GCA_025482655.1ContigJANZQS000000000SAMN30596900
19-1031
Enterococcus faecalis
GCA_025482605.1ContigJANZQU000000000SAMN30596902
19-1078
Enterococcus faecalis
GCA_025482215.1ContigJANZRL000000000SAMN30596919
19-974
Enterococcus faecalis
GCA_025482175.1ContigJANZRJ000000000SAMN30596917
19-922
Enterococcus faecalis
GCA_025482195.1ContigJANZRI000000000SAMN30596916
19-918
Enterococcus faecalis
GCA_025482445.1ContigJANZRD000000000SAMN30596911
19-690
Enterococcus faecalis
GCA_025482455.1ContigJANZRC000000000SAMN30596910
19-575
Enterococcus faecalis
GCA_025482435.1ContigJANZRB000000000SAMN30596909
19-539
Enterococcus faecalis
GCA_025482395.1ContigJANZRE000000000SAMN30596912
19-870
Enterococcus faecalis
GCA_025482405.1ContigJANZRF000000000SAMN30596913
19-883
Enterococcus faecalis
GCA_025482255.1ContigJANZRH000000000SAMN30596915
19-898
Enterococcus faecalis
GCA_025482285.1ContigJANZRG000000000SAMN30596914
19-885
Enterococcus faecalis
GCA_025482095.1ContigJANZRK000000000SAMN30596918
19-958
Enterococcus faecalis
GCA_025482075.1ContigJANZRM000000000SAMN30596920
19-988
Enterococcus faecalis
GCA_025482045.1ContigJANZRO000000000SAMN30596922
20-424bis
Enterococcus faecalis
GCA_025482035.1ContigJANZRN000000000SAMN30596921
20-300
Enterococcus faecalis
GCA_025482015.1ContigJANZRP000000000SAMN30596923
20-429
Enterococcus faecalis
GCA_025478275.1ContigJANZUD000000000SAMN30596989
18-797
Enterococcus faecium
GCA_025478255.1ContigJANZUE000000000SAMN30596990
18-818bis
Enterococcus faecium
GCA_025478215.1ContigJANZUF000000000SAMN30596991
18-833bis
Enterococcus faecium
GCA_025478225.1ContigJANZUG000000000SAMN30596992
18-835
Enterococcus faecium
GCA_025478365.1ContigJANZTY000000000SAMN30596984
18-662
Enterococcus faecium
GCA_025478325.1ContigJANZTZ000000000SAMN30596985
18-688
Enterococcus faecium
GCA_025478315.1ContigJANZUA000000000SAMN30596986
18-700
Enterococcus faecium
GCA_025478305.1ContigJANZUB000000000SAMN30596987
18-728
Enterococcus faecium
GCA_025478295.1ContigJANZUC000000000SAMN30596988
18-785
Enterococcus faecium
GCA_025478555.1ContigJANZTS000000000SAMN30596978
18-562
Enterococcus faecium
GCA_025478515.1ContigJANZTR000000000SAMN30596977
18-505
Enterococcus faecium
GCA_025478425.1ContigJANZTW000000000SAMN30596982
18-620
Enterococcus faecium
GCA_025478445.1ContigJANZTV000000000SAMN30596981
18-584
Enterococcus faecium
GCA_025478435.1ContigJANZTT000000000SAMN30596979
18-563
Enterococcus faecium
GCA_025478415.1ContigJANZTU000000000SAMN30596980
18-569
Enterococcus faecium
GCA_025478195.1ContigJANZUH000000000SAMN30596993
18-857
Enterococcus faecium
GCA_025478175.1ContigJANZUI000000000SAMN30596994
19-005bis
Enterococcus faecium
GCA_025478155.1ContigJANZUJ000000000SAMN30596995
19-006
Enterococcus faecium
GCA_025478125.1ContigJANZUK000000000SAMN30596996
19-034
Enterococcus faecium
GCA_025478105.1ContigJANZUL000000000SAMN30596997
19-048
Enterococcus faecium
GCA_025478095.1ContigJANZUM000000000SAMN30596998
19-050
Enterococcus faecium
GCA_025478075.1ContigJANZUN000000000SAMN30596999
19-083
Enterococcus faecium
GCA_025478055.1ContigJANZUO000000000SAMN30597000
19-1017
Enterococcus faecium
GCA_025478035.1ContigJANZUP000000000SAMN30597001
19-1030
Enterococcus faecium
GCA_025478015.1ContigJANZUQ000000000SAMN30597002
19-105
Enterococcus faecium
GCA_025477985.1ContigJANZUV000000000SAMN30597007
19-1102
Enterococcus faecium
GCA_025477975.1ContigJANZUS000000000SAMN30597004
19-1072
Enterococcus faecium
GCA_025477945.1ContigJANZUR000000000SAMN30597003
19-1068
Enterococcus faecium
GCA_025477925.1ContigJANZUT000000000SAMN30597005
19-1096
Enterococcus faecium
GCA_025477915.1ContigJANZUU000000000SAMN30597006
19-1100
Enterococcus faecium
GCA_025477435.1ContigJANZVS000000000SAMN30597030
19-721
Enterococcus faecium
GCA_025477845.1ContigJANZUY000000000SAMN30597010
19-1132
Enterococcus faecium
GCA_025477345.1ContigJANZVX000000000SAMN30597035
19-836
Enterococcus faecium
GCA_025477335.1ContigJANZVY000000000SAMN30597036
19-909
Enterococcus faecium
GCA_025477605.1ContigJANZVI000000000SAMN30597020
19-222
Enterococcus faecium
GCA_025477585.1ContigJANZVJ000000000SAMN30597021
19-239
Enterococcus faecium
GCA_025477615.1ContigJANZVL000000000SAMN30597023
19-245
Enterococcus faecium
GCA_025477575.1ContigJANZVK000000000SAMN30597022
19-244
Enterococcus faecium
GCA_025477555.1ContigJANZVM000000000SAMN30597024
19-329
Enterococcus faecium
GCA_025477535.1ContigJANZVN000000000SAMN30597025
19-340
Enterococcus faecium
GCA_025477465.1ContigJANZVR000000000SAMN30597029
19-573
Enterococcus faecium
GCA_025477515.1ContigJANZVP000000000SAMN30597027
19-538
Enterococcus faecium
GCA_025477495.1ContigJANZVQ000000000SAMN30597028
19-572
Enterococcus faecium
GCA_025477455.1ContigJANZVT000000000SAMN30597031
19-782
Enterococcus faecium
GCA_025478395.1ContigJANZTX000000000SAMN30596983
18-626
Enterococcus faecium
GCA_025477875.1ContigJANZUX000000000SAMN30597009
19-1124
Enterococcus faecium
GCA_025477895.1ContigJANZUW000000000SAMN30597008
19-1106
Enterococcus faecium
GCA_025477835.1ContigJANZUZ000000000SAMN30597011
19-1140
Enterococcus faecium
GCA_025477815.1ContigJANZVA000000000SAMN30597012
19-1144
Enterococcus faecium
GCA_025477795.1ContigJANZVB000000000SAMN30597013
19-1147
Enterococcus faecium
GCA_025477745.1ContigJANZVD000000000SAMN30597015
19-1156
Enterococcus faecium
GCA_025477755.1ContigJANZVF000000000SAMN30597017
19-140
Enterococcus faecium
GCA_025477735.1ContigJANZVC000000000SAMN30597014
19-1152
Enterococcus faecium
GCA_025477715.1ContigJANZVG000000000SAMN30597018
19-166
Enterococcus faecium
GCA_025477665.1ContigJANZVO000000000SAMN30597026
19-441
Enterococcus faecium
GCA_025477685.1ContigJANZVE000000000SAMN30597016
19-134
Enterococcus faecium
GCA_025477655.1ContigJANZVH000000000SAMN30597019
19-183
Enterococcus faecium
GCA_025476895.1ContigJANZWL000000000SAMN30597049
20-280
Enterococcus faecium
GCA_025476855.1ContigJANZWN000000000SAMN30597051
20-296
Enterococcus faecium
GCA_025476815.1ContigJANZWO000000000SAMN30597052
20-304
Enterococcus faecium
GCA_025476825.1ContigJANZWM000000000SAMN30597050
20-294
Enterococcus faecium
GCA_025477415.1ContigJANZVU000000000SAMN30597032
19-791
Enterococcus faecium
GCA_025477395.1ContigJANZVV000000000SAMN30597033
19-806
Enterococcus faecium
GCA_025477355.1ContigJANZVW000000000SAMN30597034
19-809
Enterococcus faecium
GCA_025476955.1ContigJANZWI000000000SAMN30597046
20-179
Enterococcus faecium
GCA_025476915.1ContigJANZWK000000000SAMN30597048
20-259
Enterococcus faecium
GCA_025477085.1ContigJANZWG000000000SAMN30597044
20-161.1
Enterococcus faecium
GCA_025477065.1ContigJANZWF000000000SAMN30597043
20-158
Enterococcus faecium
GCA_025477015.1ContigJANZWJ000000000SAMN30597047
20-182
Enterococcus faecium
GCA_025477025.1ContigJANZWH000000000SAMN30597045
20-161.2
Enterococcus faecium
GCA_025477155.1ContigJANZWE000000000SAMN30597042
20-151
Enterococcus faecium
GCA_025477285.1ContigJANZVZ000000000SAMN30597037
19-979
Enterococcus faecium
GCA_025477275.1ContigJANZWB000000000SAMN30597039
20-101
Enterococcus faecium
GCA_025477245.1ContigJANZWA000000000SAMN30597038
20-026
Enterococcus faecium
GCA_025477235.1ContigJANZWC000000000SAMN30597040
20-123
Enterococcus faecium
GCA_025477215.1ContigJANZWD000000000SAMN30597041
20-147
Enterococcus faecium
GCA_025476655.1ContigJANZWR000000000SAMN30597055
20-386
Enterococcus faecium
GCA_025476665.1ContigJANZWT000000000SAMN30597057
20-407
Enterococcus faecium
GCA_025476595.1ContigJANZWU000000000SAMN30597058
20-421
Enterococcus faecium
GCA_025476555.1ContigJANZWS000000000SAMN30597056
20-389
Enterococcus faecium
GCA_025476735.1ContigJANZWP000000000SAMN30597053
20-318
Enterococcus faecium
GCA_025476715.1ContigJANZWQ000000000SAMN30597054
20-354
Enterococcus faecium
GCA_025476465.1ContigJANZWV000000000SAMN30597059
20-448
Enterococcus faecium
GCA_025476475.1ContigJANZWX000000000SAMN30597061
20-598
Enterococcus faecium
GCA_025476455.1ContigJANZWW000000000SAMN30597060
20-469
Enterococcus faecium
GCA_025481965.1ContigJANZRQ000000000SAMN30596924
17-006
Enterococcus faecium
GCA_025481945.1ContigJANZRR000000000SAMN30596925
17-028
Enterococcus faecium
GCA_025481955.1ContigJANZRT000000000SAMN30596927
17-044.2
Enterococcus faecium
GCA_025481935.1ContigJANZRS000000000SAMN30596926
17-044.1
Enterococcus faecium
GCA_025481745.1ContigJANZSC000000000SAMN30596936
17-405.1
Enterococcus faecium
GCA_025481715.1ContigJANZSF000000000SAMN30596939
18-003
Enterococcus faecium
GCA_025481695.1ContigJANZTO000000000SAMN30596974
18-471
Enterococcus faecium
GCA_025481915.1ContigJANZRU000000000SAMN30596928
17-056
Enterococcus faecium
GCA_025481895.1ContigJANZRV000000000SAMN30596929
17-064
Enterococcus faecium
GCA_025481875.1ContigJANZRY000000000SAMN30596932
17-245
Enterococcus faecium
GCA_025481845.1ContigJANZSA000000000SAMN30596934
17-318
Enterococcus faecium
GCA_025481835.1ContigJANZRX000000000SAMN30596931
17-180
Enterococcus faecium
GCA_025481815.1ContigJANZRW000000000SAMN30596930
17-162
Enterococcus faecium
GCA_025481795.1ContigJANZSB000000000SAMN30596935
17-354
Enterococcus faecium
GCA_025479735.1ContigJANZRZ000000000SAMN30596933
17-266
Enterococcus faecium
GCA_025479715.1ContigJANZSD000000000SAMN30596937
17-477
Enterococcus faecium
GCA_025479745.1ContigJANZSJ000000000SAMN30596943
18-041
Enterococcus faecium
GCA_025479635.1ContigJANZSH000000000SAMN30596941
18-016
Enterococcus faecium
GCA_025479615.1ContigJANZSK000000000SAMN30596944
18-086
Enterococcus faecium
GCA_025479595.1ContigJANZSO000000000SAMN30596948
18-122
Enterococcus faecium
GCA_025479575.1ContigJANZSM000000000SAMN30596946
18-088
Enterococcus faecium
GCA_025479545.1ContigJANZSL000000000SAMN30596945
18-087
Enterococcus faecium
GCA_025479535.1ContigJANZSP000000000SAMN30596949
18-129.1
Enterococcus faecium
GCA_025479515.1ContigJANZSN000000000SAMN30596947
18-099
Enterococcus faecium
GCA_025479485.1ContigJANZSQ000000000SAMN30596950
18-131
Enterococcus faecium
GCA_025479475.1ContigJANZST000000000SAMN30596953
18-161
Enterococcus faecium
GCA_025479445.1ContigJANZSR000000000SAMN30596951
18-133
Enterococcus faecium
GCA_025479425.1ContigJANZSU000000000SAMN30596954
18-178
Enterococcus faecium
GCA_025479415.1ContigJANZSS000000000SAMN30596952
18-148
Enterococcus faecium
GCA_025479665.1ContigJANZSE000000000SAMN30596938
17-509
Enterococcus faecium
GCA_025479675.1ContigJANZSI000000000SAMN30596942
18-033
Enterococcus faecium
GCA_025479655.1ContigJANZSG000000000SAMN30596940
18-011
Enterococcus faecium
GCA_025479385.1ContigJANZSW000000000SAMN30596956
18-200
Enterococcus faecium
GCA_025479355.1ContigJANZSV000000000SAMN30596955
18-190
Enterococcus faecium
GCA_025479295.1ContigJANZSY000000000SAMN30596958
18-215
Enterococcus faecium
GCA_025479305.1ContigJANZTA000000000SAMN30596960
18-242
Enterococcus faecium
GCA_025479275.1ContigJANZTB000000000SAMN30596961
18-260
Enterococcus faecium
GCA_025478705.1ContigJANZTN000000000SAMN30596973
18-465
Enterococcus faecium
GCA_025478695.1ContigJANZTQ000000000SAMN30596976
18-500
Enterococcus faecium
GCA_025478675.1ContigJANZTP000000000SAMN30596975
18-492
Enterococcus faecium
GCA_025478655.1ContigJANZTM000000000SAMN30596972
18-453
Enterococcus faecium
GCA_025478865.1ContigJANZTH000000000SAMN30596967
18-373
Enterococcus faecium
GCA_025478855.1ContigJANZTI000000000SAMN30596968
18-417
Enterococcus faecium
GCA_025478815.1ContigJANZTK000000000SAMN30596970
18-446
Enterococcus faecium
GCA_025478735.1ContigJANZTL000000000SAMN30596971
18-449
Enterococcus faecium
GCA_025479205.1ContigJANZSZ000000000SAMN30596959
18-228
Enterococcus faecium
GCA_025479175.1ContigJANZSX000000000SAMN30596957
18-202
Enterococcus faecium
GCA_025479115.1ContigJANZTC000000000SAMN30596962
18-273bis
Enterococcus faecium
GCA_025479035.1ContigJANZTG000000000SAMN30596966
18-367
Enterococcus faecium
GCA_025479025.1ContigJANZTD000000000SAMN30596963
18-280
Enterococcus faecium
GCA_025478955.1ContigJANZTF000000000SAMN30596965
18-303
Enterococcus faecium
GCA_025479015.1ContigJANZTE000000000SAMN30596964
18-288
Enterococcus faecium
GCA_025478915.1ContigJANZTJ000000000SAMN30596969
18-423
Enterococcus faecium

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