ID 894924 - BioProject

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Accession: PRJEB53667 ID: 894924

Characterization by shotgun sequencing of the caecal metagenome of broilers raised in a farm in the American Midwest.

Characterization by shotgun sequencing of the caecal metagenome of broilers raised in a farm in the American Midwest. Data was generated by DSM Nutritional Products.

Accession	PRJEB53667
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 27-Oct-2022 Institut National pour la Recherche Agronomique (FRANCE)

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	20315
WGS master	219
SRA Experiments	48
Other datasets
BioSample	267
Assembly	219

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

219
219

Assembly	WGS	BioSample	Taxonomy
GCA_947856865.1	CANUCT000000000	SAMEA112285449	Acidaminococcaceae bacterium
GCA_947855535.1	CANUAF000000000	SAMEA112285525	Akkermansia muciniphila
GCA_947853895.1	CANTXV000000000	SAMEA112285497	Alistipes communis
GCA_947855695.1	CANUAQ000000000	SAMEA112285480	Alistipes dispar
GCA_947856065.1	CANUBQ000000000	SAMEA112285462	Alistipes onderdonkii
GCA_947853325.1	CANTWF000000000	SAMEA112285473	Bacteroides clarus
GCA_947856275.1	CANUBX000000000	SAMEA112285505	Bacteroides fragilis
GCA_947854685.1	CANTZD000000000	SAMEA112285490	Bacteroides uniformis
GCA_947856295.1	CANUBT000000000	SAMEA112285443	Barnesiella intestinihominis
GCA_947853515.1	CANTWW000000000	SAMEA112285532	Barnesiella viscericola
GCA_947856315.1	CANUCH000000000	SAMEA112285491	Butyricimonas faecihominis
GCA_947857145.1	CANUDH000000000	SAMEA112285499	Butyricimonas paravirosa
GCA_947853455.1	CANTWU000000000	SAMEA112285475	Campylobacter coli
GCA_947853945.1	CANTXP000000000	SAMEA112285516	Campylobacter jejuni
GCA_947855885.1	CANUAT000000000	SAMEA112285472	Candidatus Alistipes avicola
GCA_947855945.1	CANUBH000000000	SAMEA112285439	Candidatus Alistipes cottocaccae
GCA_947852695.1	CANTVH000000000	SAMEA112285463	Candidatus Alistipes excrementavium
GCA_947855845.1	CANUBC000000000	SAMEA112285436	Candidatus Alistipes intestinipullorum
GCA_947854325.1	CANTYP000000000	SAMEA112285444	Candidatus Alistipes merdavium
GCA_947857265.1	CANUDJ000000000	SAMEA112285432	Candidatus Alistipes merdipullorum
GCA_947856485.1	CANUCE000000000	SAMEA112285446	Candidatus Alistipes stercorigallinarum
GCA_947855785.1	CANUBA000000000	SAMEA112285632	Candidatus Allocopromorpha excrementipullorum
GCA_947855255.1	CANUAA000000000	SAMEA112285642	Candidatus Anaerobutyricum avicola
GCA_947853115.1	CANTWC000000000	SAMEA112285619	Candidatus Anaeromassilibacillus stercoravium
GCA_947855475.1	CANUAG000000000	SAMEA112285573	Candidatus Anaerostipes avistercoris
GCA_947853175.1	CANTVX000000000	SAMEA112285609	Candidatus Avichristensenella intestinipullorum
GCA_947856635.1	CANUCO000000000	SAMEA112285477	Candidatus Avidehalobacter gallistercoris
GCA_947855265.1	CANUAB000000000	SAMEA112285501	Candidatus Avirikenella pullistercoris
GCA_947855635.1	CANUAO000000000	SAMEA112285634	Candidatus Bariatricus faecipullorum
GCA_947852535.1	CANTVB000000000	SAMEA112285433	Candidatus Barnesiella excrementavium
GCA_947854375.1	CANTYQ000000000	SAMEA112285586	Candidatus Blautia intestinigallinarum
GCA_947855205.1	CANTZY000000000	SAMEA112285515	Candidatus Butyricimonas faecavium
GCA_947856195.1	CANUBL000000000	SAMEA112285450	Candidatus Caccalectryoclostridium excrementigallinarum
GCA_947856565.1	CANUCP000000000	SAMEA112285511	Candidatus Caccopulliclostridium gallistercoris
GCA_947854415.1	CANTYX000000000	SAMEA112285600	Candidatus Caccosoma faecigallinarum
GCA_947853595.1	CANTXC000000000	SAMEA112285546	Candidatus Choladocola avistercoris
GCA_947856355.1	CANUCF000000000	SAMEA112285560	Candidatus Coproplasma stercorigallinarum
GCA_947856805.1	CANUCV000000000	SAMEA112285474	Candidatus Coproplasma stercoripullorum
GCA_947856155.1	CANUBV000000000	SAMEA112285456	Candidatus Coprovivens excrementavium
GCA_947854055.1	CANTYE000000000	SAMEA112285587	Candidatus Enterocloster excrementigallinarum
GCA_947853705.1	CANTXM000000000	SAMEA112285447	Candidatus Enterousia intestinigallinarum
GCA_947856645.1	CANUCR000000000	SAMEA112285581	Candidatus Erysipelatoclostridium merdavium
GCA_947854545.1	CANTZE000000000	SAMEA112285481	Candidatus Faecalibacterium gallistercoris
GCA_947855615.1	CANUAJ000000000	SAMEA112285636	Candidatus Faecenecus gallistercoris
GCA_947854585.1	CANTZB000000000	SAMEA112285527	Candidatus Faeciplasma avium
GCA_947854915.1	CANTZN000000000	SAMEA112285467	Candidatus Faeciplasma pullistercoris
GCA_947855295.1	CANUAC000000000	SAMEA112285521	Candidatus Faecousia excrementigallinarum
GCA_947853825.1	CANTXU000000000	SAMEA112285538	Candidatus Faecousia faecigallinarum
GCA_947855345.1	CANUAD000000000	SAMEA112285484	Candidatus Faecousia faecipullorum
GCA_947854945.1	CANTZS000000000	SAMEA112285624	Candidatus Faecousia gallistercoris
GCA_947854455.1	CANTYU000000000	SAMEA112285483	Candidatus Fimenecus excrementavium
GCA_947856895.1	CANUCW000000000	SAMEA112285437	Candidatus Fimimonas gallinarum
GCA_947855395.1	CANUAH000000000	SAMEA112285630	Candidatus Fimimorpha faecalis
GCA_947853755.1	CANTXH000000000	SAMEA112285610	Candidatus Fimiplasma intestinipullorum
GCA_947852495.1	CANTVC000000000	SAMEA112285616	Candidatus Fimisoma avicola
GCA_947853155.1	CANTWI000000000	SAMEA112285614	Candidatus Fimousia stercorigallinarum
GCA_947853955.1	CANTXW000000000	SAMEA112285543	Candidatus Gallibacteroides avistercoris
GCA_947856525.1	CANUCI000000000	SAMEA112285526	Candidatus Galligastranaerophilus faecipullorum
GCA_947856955.1	CANUCY000000000	SAMEA112285552	Candidatus Galligastranaerophilus gallistercoris
GCA_947857025.1	CANUDD000000000	SAMEA112285454	Candidatus Galligastranaerophilus intestinigallinarum
GCA_947853905.1	CANTXT000000000	SAMEA112285535	Candidatus Gallimonas intestinavium
GCA_947853685.1	CANTXA000000000	SAMEA112285469	Candidatus Gallimonas intestinigallinarum
GCA_947854125.1	CANTYG000000000	SAMEA112285590	Candidatus Galloscillospira excrementipullorum
GCA_947857085.1	CANUDF000000000	SAMEA112285548	Candidatus Gastranaerophilales bacterium
GCA_947854135.1	CANTYF000000000	SAMEA112285556	Candidatus Gastranaerophilales bacterium
GCA_947856285.1	CANUBU000000000	SAMEA112285568	Candidatus Gastranaerophilales bacterium
GCA_947854045.1	CANTYA000000000	SAMEA112285582	Candidatus Gastranaerophilales bacterium
GCA_947853345.1	CANTWH000000000	SAMEA112285547	Candidatus Gastranaerophilales bacterium
GCA_947853605.1	CANTXI000000000	SAMEA112285623	Candidatus Gastranaerophilales bacterium
GCA_947853965.1	CANTYD000000000	SAMEA112285561	Candidatus Gastranaerophilales bacterium
GCA_947856595.1	CANUCQ000000000	SAMEA112285576	Candidatus Gastranaerophilales bacterium
GCA_947852875.1	CANTVN000000000	SAMEA112285608	Candidatus Gastranaerophilales bacterium
GCA_947856325.1	CANUCA000000000	SAMEA112285563	Candidatus Gastranaerophilales bacterium
GCA_947854025.1	CANTYC000000000	SAMEA112285594	Candidatus Gastranaerophilales bacterium
GCA_947853375.1	CANTWJ000000000	SAMEA112285604	Candidatus Gastranaerophilales bacterium
GCA_947852705.1	CANTVA000000000	SAMEA112285637	Candidatus Heteroclostridium caecigallinarum
GCA_947853285.1	CANTWE000000000	SAMEA112285598	Candidatus Lachnoclostridium stercoripullorum
GCA_947853985.1	CANTXX000000000	SAMEA112285506	Candidatus Limihabitans stercoravium
GCA_947853925.1	CANTXQ000000000	SAMEA112285564	Candidatus Mailhella excrementigallinarum
GCA_947854935.1	CANTZT000000000	SAMEA112285633	Candidatus Mailhella merdigallinarum
GCA_947854445.1	CANTYT000000000	SAMEA112285596	Candidatus Massilimicrobiota merdigallinarum
GCA_947853255.1	CANTWL000000000	SAMEA112285551	Candidatus Mediterraneibacter avicola
GCA_947856765.1	CANUCS000000000	SAMEA112285458	Candidatus Mediterraneibacter excrementipullorum
GCA_947853495.1	CANTWN000000000	SAMEA112285620	Candidatus Merdibacter merdigallinarum
GCA_947854855.1	CANTZU000000000	SAMEA112285626	Candidatus Onthocola gallistercoris
GCA_947853995.1	CANTYI000000000	SAMEA112285569	Candidatus Ornithoclostridium excrementipullorum
GCA_947852925.1	CANTVE000000000	SAMEA112285639	Candidatus Ruminococcus avistercoris
GCA_947853275.1	CANTWD000000000	SAMEA112285627	Candidatus Ruthenibacterium merdipullorum
GCA_947854155.1	CANTYL000000000	SAMEA112285541	Candidatus Scatenecus faecavium
GCA_947853145.1	CANTVO000000000	SAMEA112285523	Candidatus Scatocola faecipullorum
GCA_947854425.1	CANTYW000000000	SAMEA112285589	Candidatus Scatomonas merdigallinarum
GCA_947857155.1	CANUDG000000000	SAMEA112285452	Candidatus Scatovivens faecipullorum
GCA_947854335.1	CANTYR000000000	SAMEA112285585	Candidatus Scybalosoma faecavium
GCA_947853815.1	CANTXO000000000	SAMEA112285479	Candidatus Stercoripulliclostridium merdigallinarum
GCA_947855495.1	CANUAL000000000	SAMEA112285574	Candidatus Stercoripulliclostridium merdipullorum
GCA_947854745.1	CANTZI000000000	SAMEA112285431	Candidatus Tidjanibacter gallistercoris
GCA_947854365.1	CANTYS000000000	SAMEA112285593	Candidatus Ureaplasma intestinipullorum
GCA_947852615.1	CANTVI000000000	SAMEA112285533	Enterococcus cecorum
GCA_947854105.1	CANTYK000000000	SAMEA112285588	Escherichia coli
GCA_947853855.1	CANTXR000000000	SAMEA112285441	Helicobacter pullorum
GCA_947855375.1	CANUAI000000000	SAMEA112285464	Lactobacillus crispatus
GCA_947853725.1	CANTXD000000000	SAMEA112285445	Lactobacillus gallinarum
GCA_947854235.1	CANTYN000000000	SAMEA112285597	Lactobacillus johnsonii
GCA_947853845.1	CANTXN000000000	SAMEA112285559	Ligilactobacillus salivarius
GCA_947852915.1	CANTVR000000000	SAMEA112285606	Limosilactobacillus reuteri
GCA_947855605.1	CANUAM000000000	SAMEA112285638	Limosilactobacillus vaginalis
GCA_947853975.1	CANTYB000000000	SAMEA112285562	Massilicoli timonensis
GCA_947852975.1	CANTWA000000000	SAMEA112285489	Merdimonas faecis
GCA_947853215.1	CANTWS000000000	SAMEA112285503	Odoribacter splanchnicus
GCA_947854515.1	CANTZF000000000	SAMEA112285466	Parabacteroides distasonis
GCA_947855715.1	CANUAN000000000	SAMEA112285485	Parabacteroides johnsonii
GCA_947854905.1	CANTZM000000000	SAMEA112285448	Parabacteroides merdae
GCA_947853235.1	CANTVY000000000	SAMEA112285451	Parasutterella excrementihominis
GCA_947854385.1	CANTZC000000000	SAMEA112285599	Phascolarctobacterium faecium
GCA_947853775.1	CANTXJ000000000	SAMEA112285453	Phocaeicola dorei
GCA_947853575.1	CANTWR000000000	SAMEA112285461	Rikenella microfusus
GCA_947855975.1	CANUBN000000000	SAMEA112285542	Streptococcus alactolyticus
GCA_947856995.1	CANUDB000000000	SAMEA112285530	Thomasclavelia spiroformis
GCA_947855825.1	CANUAU000000000	SAMEA112285648	Turicimonas muris
GCA_947856925.1	CANUCZ000000000	SAMEA112285550	uncultured Alphaproteobacteria bacterium
GCA_947854885.1	CANTZL000000000	SAMEA112285631	uncultured Alphaproteobacteria bacterium
GCA_947856575.1	CANUCK000000000	SAMEA112285578	uncultured Alphaproteobacteria bacterium
GCA_947854535.1	CANTZA000000000	SAMEA112285430	uncultured Alphaproteobacteria bacterium
GCA_947853625.1	CANTXB000000000	SAMEA112285435	uncultured Bacilli bacterium
GCA_947853795.1	CANTXK000000000	SAMEA112285528	uncultured Bacilli bacterium
GCA_947856945.1	CANUDA000000000	SAMEA112285507	uncultured Bacilli bacterium
GCA_947853065.1	CANTVS000000000	SAMEA112285643	uncultured Bacilli bacterium
GCA_947854465.1	CANTYV000000000	SAMEA112285591	uncultured Bacilli bacterium
GCA_947855985.1	CANUAX000000000	SAMEA112285509	uncultured Bacilli bacterium
GCA_947855965.1	CANUAV000000000	SAMEA112285482	uncultured Bacilli bacterium
GCA_947856335.1	CANUCD000000000	SAMEA112285486	uncultured Bacilli bacterium
GCA_947856265.1	CANUBW000000000	SAMEA112285534	uncultured Bacilli bacterium
GCA_947853015.1	CANTVK000000000	SAMEA112285617	uncultured Bacilli bacterium
GCA_947856555.1	CANUCL000000000	SAMEA112285524	uncultured Bacilli bacterium
GCA_947853525.1	CANTWO000000000	SAMEA112285476	uncultured Bacilli bacterium
GCA_947853565.1	CANTWZ000000000	SAMEA112285618	uncultured Bacilli bacterium
GCA_947853365.1	CANTWQ000000000	SAMEA112285602	uncultured Bacilli bacterium
GCA_947853655.1	CANTWV000000000	SAMEA112285455	uncultured Bacilli bacterium
GCA_947855045.1	CANTZP000000000	SAMEA112285487	uncultured Bacilli bacterium
GCA_947854505.1	CANTZH000000000	SAMEA112285592	uncultured Bacilli bacterium
GCA_947856685.1	CANUCN000000000	SAMEA112285510	uncultured Bacilli bacterium
GCA_947853245.1	CANTWP000000000	SAMEA112285622	uncultured Bacilli bacterium
GCA_947854765.1	CANTZJ000000000	SAMEA112285496	uncultured Bacilli bacterium
GCA_947856365.1	CANUCC000000000	SAMEA112285540	uncultured Bacilli bacterium
GCA_947856025.1	CANUBE000000000	SAMEA112285536	uncultured Bacilli bacterium
GCA_947854815.1	CANTZK000000000	SAMEA112285492	uncultured Bacilli bacterium
GCA_947856075.1	CANUBD000000000	SAMEA112285470	uncultured Bacilli bacterium
GCA_947855905.1	CANUAZ000000000	SAMEA112285577	uncultured Bacilli bacterium
GCA_947853195.1	CANTVV000000000	SAMEA112285465	uncultured Bacilli bacterium
GCA_947855125.1	CANTZX000000000	SAMEA112285471	uncultured Bacteroidales bacterium
GCA_947854995.1	CANTZO000000000	SAMEA112285442	uncultured Bacteroidales bacterium
GCA_947852895.1	CANTVG000000000	SAMEA112285646	uncultured Christensenellaceae bacterium
GCA_947856125.1	CANUBO000000000	SAMEA112285438	uncultured Christensenellaceae bacterium
GCA_947855315.1	CANUAE000000000	SAMEA112285488	uncultured Clostridia bacterium
GCA_947857295.1	CANUDK000000000	SAMEA112285644	uncultured Clostridia bacterium
GCA_947853295.1	CANTWK000000000	SAMEA112285508	uncultured Clostridia bacterium
GCA_947854925.1	CANTZR000000000	SAMEA112285628	uncultured Clostridia bacterium
GCA_947853265.1	CANTWG000000000	SAMEA112285641	uncultured Clostridia bacterium
GCA_947853385.1	CANTWT000000000	SAMEA112285549	uncultured Clostridia bacterium
GCA_947855735.1	CANUAS000000000	SAMEA112285575	uncultured Clostridia bacterium
GCA_947853105.1	CANTVP000000000	SAMEA112285613	uncultured Clostridia bacterium
GCA_947853395.1	CANTWM000000000	SAMEA112285645	uncultured Clostridia bacterium
GCA_947855305.1	CANTZZ000000000	SAMEA112285555	uncultured Clostridia bacterium
GCA_947853075.1	CANTVL000000000	SAMEA112285493	uncultured Clostridia bacterium
GCA_947856225.1	CANUBM000000000	SAMEA112285514	uncultured Clostridia bacterium
GCA_947853315.1	CANTVU000000000	SAMEA112285621	uncultured Clostridia bacterium
GCA_947852995.1	CANTVQ000000000	SAMEA112285603	uncultured Clostridia bacterium
GCA_947854345.1	CANTYO000000000	SAMEA112285595	uncultured Clostridia bacterium
GCA_947856095.1	CANUBK000000000	SAMEA112285495	uncultured Clostridia bacterium
GCA_947855705.1	CANUAP000000000	SAMEA112285583	uncultured Clostridia bacterium
GCA_947855815.1	CANUBF000000000	SAMEA112285580	uncultured Clostridia bacterium
GCA_947854395.1	CANTYZ000000000	SAMEA112285601	uncultured Clostridia bacterium
GCA_947856825.1	CANUCX000000000	SAMEA112285502	uncultured Clostridia bacterium
GCA_947857255.1	CANUDI000000000	SAMEA112285494	uncultured Clostridia bacterium
GCA_947856345.1	CANUBZ000000000	SAMEA112285572	uncultured Clostridia bacterium
GCA_947853305.1	CANTVW000000000	SAMEA112285545	uncultured Clostridia bacterium
GCA_947854705.1	CANTZG000000000	SAMEA112285539	uncultured Clostridia bacterium
GCA_947856115.1	CANUBR000000000	SAMEA112285504	uncultured Clostridia bacterium
GCA_947856675.1	CANUCM000000000	SAMEA112285579	uncultured Clostridia bacterium
GCA_947854265.1	CANTYM000000000	SAMEA112285558	uncultured Clostridia bacterium
GCA_947856375.1	CANUBY000000000	SAMEA112285529	uncultured Clostridia bacterium
GCA_947856135.1	CANUBI000000000	SAMEA112285513	uncultured Clostridia bacterium
GCA_947853185.1	CANTVT000000000	SAMEA112285457	uncultured Clostridia bacterium
GCA_947852845.1	CANTVD000000000	SAMEA112285612	uncultured Clostridia bacterium
GCA_947853225.1	CANTVZ000000000	SAMEA112285629	uncultured Clostridia bacterium
GCA_947855895.1	CANUAY000000000	SAMEA112285500	uncultured Clostridia bacterium
GCA_947853785.1	CANTXG000000000	SAMEA112285522	uncultured Clostridia bacterium
GCA_947857065.1	CANUDC000000000	SAMEA112285531	uncultured Clostridia bacterium
GCA_947856055.1	CANUBP000000000	SAMEA112285537	uncultured Clostridia bacterium
GCA_947856205.1	CANUBJ000000000	SAMEA112285512	uncultured Clostridia bacterium
GCA_947856395.1	CANUCB000000000	SAMEA112285565	uncultured Clostridia bacterium
GCA_947853835.1	CANTXS000000000	SAMEA112285557	uncultured Clostridia bacterium
GCA_947853025.1	CANTVJ000000000	SAMEA112285607	uncultured Clostridia bacterium
GCA_947853085.1	CANTWB000000000	SAMEA112285635	uncultured Clostridia bacterium
GCA_947855755.1	CANUAR000000000	SAMEA112285553	uncultured Coprobacter sp.
GCA_947852885.1	CANTVM000000000	SAMEA112285478	uncultured Coprobacter sp.
GCA_947853665.1	CANTXF000000000	SAMEA112285605	uncultured Deferribacterales bacterium
GCA_947853535.1	CANTXE000000000	SAMEA112285625	uncultured Emergencia sp.
GCA_947854115.1	CANTYH000000000	SAMEA112285518	uncultured Firmicutes bacterium
GCA_947856755.1	CANUCU000000000	SAMEA112285459	uncultured Lachnospiraceae bacterium
GCA_947854475.1	CANTYY000000000	SAMEA112285460	uncultured Lachnospiraceae bacterium
GCA_947853875.1	CANTXL000000000	SAMEA112285571	uncultured Lachnospiraceae bacterium
GCA_947853405.1	CANTWX000000000	SAMEA112285611	uncultured Lachnospiraceae bacterium
GCA_947856145.1	CANUBS000000000	SAMEA112285647	uncultured Lachnospiraceae bacterium
GCA_947857325.1	CANUDL000000000	SAMEA112285640	uncultured Lachnospiraceae bacterium
GCA_947853915.1	CANTXZ000000000	SAMEA112285567	uncultured Lachnospiraceae bacterium
GCA_947855625.1	CANUAK000000000	SAMEA112285498	uncultured Mediterraneibacter sp.
GCA_947855055.1	CANTZV000000000	SAMEA112285520	uncultured Merdimonas sp.
GCA_947855065.1	CANTZQ000000000	SAMEA112285519	uncultured Merdimonas sp.
GCA_947856445.1	CANUCJ000000000	SAMEA112285566	uncultured Negativibacillus sp.
GCA_947853415.1	CANTWY000000000	SAMEA112285615	uncultured Oscillospiraceae bacterium
GCA_947854065.1	CANTXY000000000	SAMEA112285517	uncultured Oscillospiraceae bacterium
GCA_947856085.1	CANUBG000000000	SAMEA112285544	uncultured Parabacteroides sp.
GCA_947855115.1	CANTZW000000000	SAMEA112285434	uncultured Parabacteroides sp.
GCA_947855765.1	CANUAW000000000	SAMEA112285584	uncultured Rikenellaceae bacterium
GCA_947855835.1	CANUBB000000000	SAMEA112285468	uncultured Rikenellaceae bacterium
GCA_947856405.1	CANUCG000000000	SAMEA112285570	uncultured Romboutsia sp.
GCA_947852905.1	CANTVF000000000	SAMEA112285440	uncultured Tidjanibacter sp.
GCA_947854175.1	CANTYJ000000000	SAMEA112285554	uncultured Turicimonas sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	142
Data volume, Mbytes	94163

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Characterization by shotgun sequencing of the caecal metagenome of broilers raised in a farm in the American Midwest.

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