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Links from BioSample

Accession: PRJDB3322 ID: 279705

Hepacivirus hominis

MiSeq analysis on the RT-PCR amplicon of HCV from human sera.

See Genome Information for Hepacivirus hominis
The study focused on the question of whether HCV/HIV coinfected hemophiliacs, who are suspected of being repeatedly exposed to unheated blood-related products, differ in the composition of hepatitis C viral quasispecies (genotypes and resistance mutations), from HCV monoinfected non-hemophiliacs with or without a history of whole blood transfusion. More...
AccessionPRJDB3322
Data TypeGenome sequencing
ScopeMultiisolate
OrganismHepacivirus hominis[Taxonomy ID: 3052230]
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; Hepacivirus hominis
PublicationsOgishi M et al., "Deconvoluting the composition of low-frequency hepatitis C viral quasispecies: comparison of genotypes and NS3 resistance-associated variants between HCV/HIV coinfected hemophiliacs and HCV monoinfected patients in Japan.", PLoS One, 2015;10(3):e0119145
Grants
  • "Health Labour Sciences Research Grant" (Grant ID HIV 28, The Ministry of Health, Labor and Welfare, Japanese Government)
SubmissionRegistration date: 27-Mar-2015
Department of Infectious Diseases, Graduate School of Medicine, The University of Tokyo
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments23
Publications
PubMed1
PMC1
Other datasets
BioSample23
SRA Data Details
ParameterValue
Data volume, Gbases6
Data volume, Mbytes3876

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