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Accession: PRJEB57055 ID: 983187

Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia

Ethiopian chicken caecal microbiota

The caecal microbiota of 243 indigenous Ethiopian village chickens from 26 villages in 15 districts was analysed using metagenomic sequencing. We assembled 9,977 strain-level genomes and 1,790 species-level metagenome assembled genomes.
AccessionPRJEB57055
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 13-Jun-2023
addis ababa university
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8572
WGS master1788
Genomic DNA2
SRA Experiments264
Other datasets
BioSample2034
Assembly1790
Assembly details:
Assembly levelNumber of Assemblies
2
427
1361
1790
AssemblyLevelWGSChrsBioSampleTaxonomy
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SAMEA112662096
GCA_949297755.1ContigCASFTX000000000
SAMEA112662097
GCA_949300345.1ContigCASGDR000000000
SAMEA112662121
GCA_949300405.1ContigCASGEA000000000
SAMEA112662019
GCA_949300515.1ScaffoldCASGEP000000000
SAMEA112662047
GCA_949300595.1ContigCASGES000000000
SAMEA112662067
GCA_949300605.1ContigCASGEX000000000
SAMEA112662075
GCA_949299935.1ContigCASGCE000000000
SAMEA112662264
GCA_949299905.1ScaffoldCASGCF000000000
SAMEA112662026
GCA_949299895.1ContigCASGBV000000000
SAMEA112662215
GCA_949299995.1ContigCASGCJ000000000
SAMEA112662013
GCA_949300025.1ContigCASGCS000000000
SAMEA112662252
GCA_949299945.1ContigCASGCG000000000
SAMEA112662295
GCA_949299915.1ContigCASGCL000000000
SAMEA112662311
GCA_949299305.1ContigCASFZW000000000
SAMEA112662181
GCA_949299255.1ContigCASFZM000000000
SAMEA112662255
GCA_949299205.1ContigCASFZL000000000
SAMEA112662253
GCA_949299225.1ContigCASFZO000000000
SAMEA112662243
GCA_949299195.1ContigCASFZN000000000
SAMEA112662259
GCA_949299165.1ContigCASFZJ000000000
SAMEA112662179
SRA Data Details
ParameterValue
Data volume, Gbases3,289
Data volume, Tbytes1.06

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