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Accession: PRJNA758125 ID: 758125

soil metagenome

Trace gas oxidation by soil bacteria surrounding a Polloquere hot spring

High-elevation arid regions harbor microbial communities reliant on metabolic niches and flexibility to survive. More...
AccessionPRJNA758125
Data TypeGenome sequencing
ScopeEnvironment
Organismsoil metagenome[Taxonomy ID: 410658]
unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
PublicationsGarvin ZK et al., "Prevalence of trace gas-oxidizing soil bacteria increases with radial distance from Polloquere hot spring within a high-elevation Andean cold desert.", ISME J, 2024 Jan 8;18(1)
SubmissionRegistration date: 26-Aug-2021
Princeton University
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)22
Publications
PubMed1
PMC1
Other datasets
BioSample22
Assembly22
Assembly details:
Assembly levelNumber of Assemblies
22
22
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_039583765.1ScaffoldJAVKSJ000000000SAMN37275565
PQ2_10S_bin_4
GCA_039583695.1ScaffoldJAVKSL000000000SAMN37275567
PQ2_20S_bin_5
GCA_039583615.1ScaffoldJAVKSQ000000000SAMN37275572
PQ2_30S_bin_2
GCA_039583505.1ScaffoldJAVKSW000000000SAMN37275578
PQ2_30S_bin_5
GCA_039583425.1ScaffoldJAVKTB000000000SAMN37275583
PQ3_30S_bin_3
GCA_039583665.1ScaffoldJAVKSO000000000SAMN37275570
PQ2_20S_bin_9
GCA_039583745.1ScaffoldJAVKSK000000000SAMN37275566
PQ2_10S_bin_6
GCA_039583515.1ScaffoldJAVKST000000000SAMN37275575
PQ2_30S_bin_8
GCA_039583605.1ScaffoldJAVKSR000000000SAMN37275573
PQ2_30S_bin_10
GCA_039583555.1ScaffoldJAVKSS000000000SAMN37275574
PQ2_30S_bin_11
GCA_039583825.1ScaffoldJAVKSI000000000SAMN37275564
PQ2_0S_bin_15
GCA_039583805.1ScaffoldJAVKSH000000000SAMN37275563
PQ1_20S_bin_1
GCA_039583785.1ScaffoldJAVKSG000000000SAMN37275562
PQ1_20S_bin_2
GCA_039583565.1ScaffoldJAVKSU000000000SAMN37275576
PQ2_30S_bin_1
GCA_039583435.1ScaffoldJAVKSZ000000000SAMN37275581
PQ3_10S_bin_5
GCA_039583415.1ScaffoldJAVKTA000000000SAMN37275582
PQ3_10S_bin_6
GCA_039583405.1ScaffoldJAVKSY000000000SAMN37275580
PQ3_10S_bin_8
GCA_039583705.1ScaffoldJAVKSM000000000SAMN37275568
PQ2_20S_bin_6
GCA_039583645.1ScaffoldJAVKSP000000000SAMN37275571
PQ2_30S_bin_17
GCA_039583485.1ScaffoldJAVKSX000000000SAMN37275579
PQ2_30S_bin_3
GCA_039583545.1ScaffoldJAVKSV000000000SAMN37275577
PQ2_30S_bin_6
GCA_039583685.1ScaffoldJAVKSN000000000SAMN37275569
PQ2_20S_bin_2
SRA Data Details
ParameterValue
Data volume, Gbases128
Data volume, Mbytes43984

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