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Accession: PRJNA1067347 ID: 1067347

shrimp-borne isolates sequencing in Shenzhen

Some common species of pathogenic bacteria were isolated from raw shrimp samples, their antimicrobial resistance phenotype were tested, and genomes were subsequently sequenced.
AccessionPRJNA1067347
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 21-Jan-2024
City University of Hong Kong
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)81
Other datasets
BioSample81
Assembly81
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
81
81
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_037196825.1ContigJBBEZJ000000000SAMN39524466
cf-TS8-2
Citrobacter freundii
GCA_037196765.1ContigJBBEZN000000000SAMN39524470
cf-CIS9-1
Citrobacter portucalensis
GCA_037196685.1ContigJBBEZS000000000SAMN39524475
cf-CTS6-2
Citrobacter portucalensis
GCA_037198235.1ContigJBBEYJ000000000SAMN39524440
ec-CIS5-1
Escherichia coli
GCA_037198195.1ContigJBBEYL000000000SAMN39524442
ec-TS5-1
Escherichia coli
GCA_037197265.1ContigJBBEYT000000000SAMN39524450
ec-CTS1-1
Escherichia coli
GCA_037197145.1ContigJBBEYW000000000SAMN39524453
ec-CIS1-2
Escherichia coli
GCA_037197105.1ContigJBBEYV000000000SAMN39524452
ec-CIS1-1
Escherichia coli
GCA_037197135.1ContigJBBEYU000000000SAMN39524451
ec-CTS1-2
Escherichia coli
GCA_037197085.1ContigJBBEYX000000000SAMN39524454
ec-TS1-1
Escherichia coli
GCA_037197065.1ContigJBBEYY000000000SAMN39524455
ec-TS1-2
Escherichia coli
GCA_037197045.1ContigJBBEYZ000000000SAMN39524456
ec-TS4-1
Escherichia coli
GCA_037197015.1ContigJBBEZB000000000SAMN39524458
ec-TS2-1
Escherichia coli
GCA_037197005.1ContigJBBEZA000000000SAMN39524457
ec-TS4-2
Escherichia coli
GCA_037196965.1ContigJBBEZC000000000SAMN39524459
ec-TS2-2
Escherichia coli
GCA_037196975.1ContigJBBEZD000000000SAMN39524460
ec-CTS2-1
Escherichia coli
GCA_037196925.1ContigJBBEZG000000000SAMN39524463
ec-CIS4-2
Escherichia coli
GCA_037196945.1ContigJBBEZE000000000SAMN39524461
ec-CTS2-2
Escherichia coli
GCA_037196905.1ContigJBBEZF000000000SAMN39524462
ec-CIS4-1
Escherichia coli
GCA_037196885.1ContigJBBEZH000000000SAMN39524464
ec-TS8-1
Escherichia coli
GCA_037196865.1ContigJBBEZI000000000SAMN39524465
ec-CIS8-1
Escherichia coli
GCA_037196845.1ContigJBBEZL000000000SAMN39524468
ec-TS9-1
Escherichia coli
GCA_037196665.1ContigJBBEZR000000000SAMN39524474
ec-CIS6-1
Escherichia coli
GCA_037196735.1ContigJBBEZO000000000SAMN39524471
ec-CTS9-1
Escherichia coli
GCA_037196715.1ContigJBBEZQ000000000SAMN39524473
ec-CTS6-1
Escherichia coli
GCA_037196705.1ContigJBBEZP000000000SAMN39524472
ec-TS6-2
Escherichia coli
GCA_037197555.1ContigJBBEYM000000000SAMN39524443
ec-TS5-2
Escherichia coli
GCA_037197535.1ContigJBBEYN000000000SAMN39524444
ec-CTS5-1
Escherichia coli
GCA_037197405.1ContigJBBEYO000000000SAMN39524445
ec-CTS5-2
Escherichia coli
GCA_037196625.1ContigJBBEZT000000000SAMN39524476
ec-TS6-1
Escherichia coli
GCA_037196805.1ContigJBBEZK000000000SAMN39524467
ec-CIS8-2
Escherichia coli
GCA_037196785.1ContigJBBEZM000000000SAMN39524469
ec-CTS8-1
Escherichia coli
GCA_037197415.1ContigJBBEYP000000000SAMN39524446
kp-CLS3-1
Klebsiella pneumoniae
GCA_037197335.1ContigJBBEYQ000000000SAMN39524447
kp-CLS3-2
Klebsiella pneumoniae
GCA_037198215.1ContigJBBEYK000000000SAMN39524441
kp-CIS5-2
Klebsiella pneumoniae
GCA_037198255.1ContigJBBEYI000000000SAMN39524439
kp-CLS5-2
Klebsiella pneumoniae
GCA_037197365.1ContigJBBEYR000000000SAMN39524448
kl-CLS1-1
Klebsiella sp. CLS1-1
GCA_037197325.1ContigJBBEYS000000000SAMN39524449
kl-CLS1-2
Klebsiella sp. CLS1-2
GCA_037196585.1ContigJBBEZW000000000SAMN39524479
pf-VS6-2
Proteus faecis
GCA_037196565.1ContigJBBEZX000000000SAMN39524480
pf-VS6-1
Proteus faecis
GCA_037196505.1ContigJBBEZZ000000000SAMN39524482
pf-OS6-2
Proteus faecis
GCA_037196485.1ContigJBBFAB000000000SAMN39524484
pf-VS10-2
Proteus faecis
GCA_037196445.1ContigJBBFAC000000000SAMN39524485
pf-OS10-1
Proteus faecis
GCA_037196455.1ContigJBBFAE000000000SAMN39524487
pf-OS5-2
Proteus faecis
GCA_037196425.1ContigJBBFAD000000000SAMN39524486
pf-OS5-1
Proteus faecis
GCA_037196405.1ContigJBBFAF000000000SAMN39524488
pf-OS5-3
Proteus faecis
GCA_037196545.1ContigJBBEZY000000000SAMN39524481
pt-OS6-1
Proteus terrae subsp. cibarius
GCA_037196515.1ContigJBBFAA000000000SAMN39524483
pt-VS10-1
Proteus terrae subsp. cibarius
GCA_037196365.1ContigJBBFAG000000000SAMN39524489
pt-OS1-2
Proteus terrae
GCA_037196605.1ContigJBBEZV000000000SAMN39524478
pt-OS9-2
Proteus terrae subsp. cibarius
GCA_037196635.1ContigJBBEZU000000000SAMN39524477
pt-OS9-1
Proteus terrae subsp. cibarius
GCA_037195985.1ContigJBBFAZ000000000SAMN39524508
se-CTS4-1
Salmonella enterica
GCA_037196145.1ContigJBBFAS000000000SAMN39524501
se-CLS1-1b
Salmonella enterica
GCA_037196125.1ContigJBBFAT000000000SAMN39524502
se-CLS1-2b
Salmonella enterica
GCA_037196105.1ContigJBBFAU000000000SAMN39524503
se-CTS1-2b
Salmonella enterica
GCA_037196335.1ContigJBBFAI000000000SAMN39524491
se-CIS1-2a
Salmonella enterica
GCA_037196325.1ContigJBBFAJ000000000SAMN39524492
se-TS1-1a
Salmonella enterica
GCA_037196305.1ContigJBBFAM000000000SAMN39524495
se-CTS1-1
Salmonella enterica
GCA_037196285.1ContigJBBFAK000000000SAMN39524493
se-CLS1-1a
Salmonella enterica
GCA_037196265.1ContigJBBFAL000000000SAMN39524494
se-CLS1-2a
Salmonella enterica
GCA_037196245.1ContigJBBFAN000000000SAMN39524496
se-CTS1-2a
Salmonella enterica
GCA_037196225.1ContigJBBFAO000000000SAMN39524497
se-CIS1-1b
Salmonella enterica
GCA_037196205.1ContigJBBFAP000000000SAMN39524498
se-CIS1-2b
Salmonella enterica
GCA_037196185.1ContigJBBFAR000000000SAMN39524500
se-TS1-1b
Salmonella enterica
GCA_037196385.1ContigJBBFAH000000000SAMN39524490
se-CIS1-1a
Salmonella enterica
GCA_037195945.1ContigJBBFBC000000000SAMN39524511
va-CIS7-2
Vibrio alginolyticus
GCA_037196065.1ContigJBBFAW000000000SAMN39524505
vc-MS2-1
Vibrio cholerae
GCA_037196045.1ContigJBBFAY000000000SAMN39524507
vc-TS4-1
Vibrio cholerae
GCA_037196025.1ContigJBBFAX000000000SAMN39524506
vc-MS2-2
Vibrio cholerae
GCA_037196005.1ContigJBBFBA000000000SAMN39524509
vc-CLC6-1
Vibrio cholerae
GCA_037195785.1ContigJBBFBK000000000SAMN39524519
vc-MS10-2
Vibrio cholerae
GCA_037195865.1ContigJBBFBJ000000000SAMN39524518
vc-MS10-1
Vibrio cholerae
GCA_037195825.1ContigJBBFBG000000000SAMN39524515
vc-MS7-2
Vibrio cholerae
GCA_037195805.1ContigJBBFBH000000000SAMN39524516
vp-TS8-2
Vibrio parahaemolyticus
GCA_037195845.1ContigJBBFBI000000000SAMN39524517
vp-CTS10-1
Vibrio parahaemolyticus
GCA_037196085.1ContigJBBFAV000000000SAMN39524504
vp-CTC4-1
Vibrio parahaemolyticus
GCA_037195925.1ContigJBBFBD000000000SAMN39524512
vp-TS7-1
Vibrio parahaemolyticus
GCA_037195885.1ContigJBBFBE000000000SAMN39524513
vp-CTS7-1
Vibrio parahaemolyticus
GCA_037195895.1ContigJBBFBF000000000SAMN39524514
vp-CTS7-2
Vibrio parahaemolyticus
GCA_037195965.1ContigJBBFBB000000000SAMN39524510
vp-CIS7-1
Vibrio parahaemolyticus
GCA_037196165.1ContigJBBFAQ000000000SAMN39524499
vp-TS1-2
Vibrio parahaemolyticus

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