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Accession: PRJNA1052970 ID: 1052970

freshwater metagenome

Metagenomic Sequencing of freshwater lakes in Europe

Metagenome Sequencing was carrried out for 44 lakes , spread across the European continent
AccessionPRJNA1052970
Data TypeGenome sequencing
ScopeEnvironment
Organismfreshwater metagenome[Taxonomy ID: 449393]
unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
PublicationsShah M et al., "Genome-resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.", Environ Microbiol, 2024 Jun;26(6):e16634
Grants
  • "Differential potential of metabarcoding, metatranscriptomics, and metagenomics for the assessment of lake water quality" (Grant ID -, Bauer Stemmler Stiftung)
SubmissionRegistration date: 15-Dec-2023
University of Duisburg Essen
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)363
SRA Experiments44
Publications
PubMed1
Other datasets
BioSample407
Assembly363
Assembly details:
Assembly levelNumber of Assemblies
363
363
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_040400005.1ScaffoldJBBARC000000000SAMN40135933
EUL_209
GCA_040399685.1ScaffoldJBBART000000000SAMN40135950
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GCA_040399045.1ScaffoldJBBASY000000000SAMN40135981
EUL_257
GCA_040398765.1ScaffoldJBBATL000000000SAMN40135994
EUL_270
GCA_040398585.1ScaffoldJBBATW000000000SAMN40136005
EUL_281
GCA_040403515.1ScaffoldJBBAKP000000000SAMN40135764
EUL_040
GCA_040403475.1ScaffoldJBBAKO000000000SAMN40135763
EUL_039
GCA_040400895.1ScaffoldJBBAPL000000000SAMN40135890
EUL_166
GCA_040402615.1ScaffoldJBBAMH000000000SAMN40135808
EUL_084
GCA_040402595.1ScaffoldJBBAMI000000000SAMN40135809
EUL_085
GCA_040403455.1ScaffoldJBBAKS000000000SAMN40135767
EUL_043
GCA_040403415.1ScaffoldJBBAKU000000000SAMN40135769
EUL_045
GCA_040403395.1ScaffoldJBBAKR000000000SAMN40135766
EUL_042
GCA_040403375.1ScaffoldJBBAKV000000000SAMN40135770
EUL_046
GCA_040403355.1ScaffoldJBBAKT000000000SAMN40135768
EUL_044
GCA_040403295.1ScaffoldJBBAKY000000000SAMN40135773
EUL_049
GCA_040403275.1ScaffoldJBBAKZ000000000SAMN40135774
EUL_050
GCA_040398325.1ScaffoldJBBAUF000000000SAMN40136014
EUL_290
GCA_040402575.1ScaffoldJBBAMG000000000SAMN40135807
EUL_083
GCA_040396875.1ScaffoldJBBAWZ000000000SAMN40136086
EUL_362
GCA_040399925.1ScaffoldJBBARF000000000SAMN40135936
EUL_212
GCA_040399915.1ScaffoldJBBARE000000000SAMN40135935
EUL_211
GCA_040397015.1ScaffoldJBBAWU000000000SAMN40136081
EUL_357
GCA_040396975.1ScaffoldJBBAWT000000000SAMN40136080
EUL_356
GCA_040397745.1ScaffoldJBBAVJ000000000SAMN40136044
EUL_320
GCA_040397075.1ScaffoldJBBAWR000000000SAMN40136078
EUL_354
GCA_040397055.1ScaffoldJBBAWS000000000SAMN40136079
EUL_355
GCA_040398305.1ScaffoldJBBAUI000000000SAMN40136017
EUL_293
GCA_040402875.1ScaffoldJBBALT000000000SAMN40135794
EUL_070
GCA_040402935.1ScaffoldJBBALP000000000SAMN40135790
EUL_066
GCA_040402775.1ScaffoldJBBAMA000000000SAMN40135801
EUL_077
GCA_040403495.1ScaffoldJBBAKM000000000SAMN40135761
EUL_037
GCA_040402995.1ScaffoldJBBALN000000000SAMN40135788
EUL_064
GCA_040403015.1ScaffoldJBBALM000000000SAMN40135787
EUL_063
GCA_040402975.1ScaffoldJBBALO000000000SAMN40135789
EUL_065
GCA_040403075.1ScaffoldJBBALJ000000000SAMN40135784
EUL_060
GCA_040403535.1ScaffoldJBBAKL000000000SAMN40135760
EUL_036
GCA_040403785.1ScaffoldJBBAKA000000000SAMN40135749
EUL_025
GCA_040399745.1ScaffoldJBBARP000000000SAMN40135946
EUL_222
GCA_040398075.1ScaffoldJBBAUR000000000SAMN40136026
EUL_302
GCA_040402735.1ScaffoldJBBALZ000000000SAMN40135800
EUL_076
GCA_040399705.1ScaffoldJBBARQ000000000SAMN40135947
EUL_223
GCA_040400065.1ScaffoldJBBAQY000000000SAMN40135929
EUL_205
GCA_040399885.1ScaffoldJBBARI000000000SAMN40135939
EUL_215
GCA_040399905.1ScaffoldJBBARG000000000SAMN40135937
EUL_213
GCA_040400185.1ScaffoldJBBAQU000000000SAMN40135925
EUL_201
GCA_040400165.1ScaffoldJBBAQT000000000SAMN40135924
EUL_200
GCA_040400145.1ScaffoldJBBAQS000000000SAMN40135923
EUL_199
GCA_040400125.1ScaffoldJBBAQV000000000SAMN40135926
EUL_202
GCA_040400105.1ScaffoldJBBAQW000000000SAMN40135927
EUL_203
GCA_040400475.1ScaffoldJBBAQD000000000SAMN40135908
EUL_184
GCA_040399145.1ScaffoldJBBASS000000000SAMN40135975
EUL_251
GCA_040400875.1ScaffoldJBBAPK000000000SAMN40135889
EUL_165
GCA_040401595.1ScaffoldJBBAOE000000000SAMN40135857
EUL_133
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GCA_040404245.1ScaffoldJBBAJE000000000SAMN40135727
EUL_003
GCA_040404205.1ScaffoldJBBAJH000000000SAMN40135730
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GCA_040404185.1ScaffoldJBBAJG000000000SAMN40135729
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EUL_004
GCA_040404145.1ScaffoldJBBAJI000000000SAMN40135731
EUL_007
GCA_040404125.1ScaffoldJBBAJK000000000SAMN40135733
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GCA_040404105.1ScaffoldJBBAJJ000000000SAMN40135732
EUL_008
GCA_040404065.1ScaffoldJBBAJM000000000SAMN40135735
EUL_011
GCA_040404085.1ScaffoldJBBAJL000000000SAMN40135734
EUL_010
GCA_040398805.1ScaffoldJBBATK000000000SAMN40135993
EUL_269
GCA_040397275.1ScaffoldJBBAWI000000000SAMN40136069
EUL_345
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GCA_040397235.1ScaffoldJBBAWH000000000SAMN40136068
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EUL_347
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GCA_040397175.1ScaffoldJBBAWM000000000SAMN40136073
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GCA_040397155.1ScaffoldJBBAWP000000000SAMN40136076
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EUL_336
GCA_040397435.1ScaffoldJBBAVX000000000SAMN40136058
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EUL_337
GCA_040397305.1ScaffoldJBBAWG000000000SAMN40136067
EUL_343
GCA_040401195.1ScaffoldJBBAOT000000000SAMN40135872
EUL_148
GCA_040401235.1ScaffoldJBBAOS000000000SAMN40135871
EUL_147
GCA_040401535.1ScaffoldJBBAOL000000000SAMN40135864
EUL_140
GCA_040401475.1ScaffoldJBBAOM000000000SAMN40135865
EUL_141
GCA_040401435.1ScaffoldJBBAON000000000SAMN40135866
EUL_142
GCA_040401285.1ScaffoldJBBAOR000000000SAMN40135870
EUL_146
GCA_040401275.1ScaffoldJBBAOP000000000SAMN40135868
EUL_144
GCA_040401405.1ScaffoldJBBAOO000000000SAMN40135867
EUL_143
GCA_040401315.1ScaffoldJBBAOQ000000000SAMN40135869
EUL_145
GCA_040402715.1ScaffoldJBBAMB000000000SAMN40135802
EUL_078
GCA_040402695.1ScaffoldJBBAMD000000000SAMN40135804
EUL_080
GCA_040402675.1ScaffoldJBBAMC000000000SAMN40135803
EUL_079
GCA_040402655.1ScaffoldJBBAME000000000SAMN40135805
EUL_081
GCA_040402395.1ScaffoldJBBAMQ000000000SAMN40135817
EUL_093
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EUL_094
GCA_040402295.1ScaffoldJBBAMV000000000SAMN40135822
EUL_098
GCA_040402195.1ScaffoldJBBANC000000000SAMN40135829
EUL_105
GCA_040402175.1ScaffoldJBBANB000000000SAMN40135828
EUL_104
GCA_040402155.1ScaffoldJBBANE000000000SAMN40135831
EUL_107
GCA_040402635.1ScaffoldJBBAMF000000000SAMN40135806
EUL_082
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EUL_106
GCA_040402095.1ScaffoldJBBANF000000000SAMN40135832
EUL_108
GCA_040398905.1ScaffoldJBBATC000000000SAMN40135985
EUL_261
GCA_040398845.1ScaffoldJBBATH000000000SAMN40135990
EUL_266
GCA_040399765.1ScaffoldJBBARK000000000SAMN40135941
EUL_217
GCA_040399625.1ScaffoldJBBARV000000000SAMN40135952
EUL_228
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EUL_103
GCA_040402255.1ScaffoldJBBAMZ000000000SAMN40135826
EUL_102
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EUL_099
GCA_040402235.1ScaffoldJBBAMY000000000SAMN40135825
EUL_101
GCA_040402355.1ScaffoldJBBAMT000000000SAMN40135820
EUL_096
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EUL_100
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EUL_097
GCA_040402415.1ScaffoldJBBAMS000000000SAMN40135819
EUL_095
GCA_040400605.1ScaffoldJBBAPZ000000000SAMN40135904
EUL_180
GCA_040399665.1ScaffoldJBBARS000000000SAMN40135949
EUL_225
GCA_040399645.1ScaffoldJBBARR000000000SAMN40135948
EUL_224
GCA_040398565.1ScaffoldJBBATU000000000SAMN40136003
EUL_279
GCA_040398625.1ScaffoldJBBATS000000000SAMN40136001
EUL_277
GCA_040398605.1ScaffoldJBBATT000000000SAMN40136002
EUL_278
GCA_040397705.1ScaffoldJBBAVK000000000SAMN40136045
EUL_321
GCA_040398365.1ScaffoldJBBAUH000000000SAMN40136016
EUL_292
GCA_040403335.1ScaffoldJBBAKW000000000SAMN40135771
EUL_047
GCA_040404045.1ScaffoldJBBAJN000000000SAMN40135736
EUL_012
GCA_040403715.1ScaffoldJBBAKE000000000SAMN40135753
EUL_029
GCA_040403695.1ScaffoldJBBAKD000000000SAMN40135752
EUL_028
GCA_040404005.1ScaffoldJBBAJO000000000SAMN40135737
EUL_013
GCA_040403965.1ScaffoldJBBAJP000000000SAMN40135738
EUL_014
GCA_040403255.1ScaffoldJBBALA000000000SAMN40135775
EUL_051
GCA_040397405.1ScaffoldJBBAWD000000000SAMN40136064
EUL_340
GCA_040397365.1ScaffoldJBBAWE000000000SAMN40136065
EUL_341
GCA_040397345.1ScaffoldJBBAWC000000000SAMN40136063
EUL_339
GCA_040403055.1ScaffoldJBBALK000000000SAMN40135785
EUL_061
GCA_040403215.1ScaffoldJBBALD000000000SAMN40135778
EUL_054
GCA_040403175.1ScaffoldJBBALF000000000SAMN40135780
EUL_056
GCA_040403155.1ScaffoldJBBALE000000000SAMN40135779
EUL_055
GCA_040403135.1ScaffoldJBBALG000000000SAMN40135781
EUL_057
GCA_040403095.1ScaffoldJBBALI000000000SAMN40135783
EUL_059
GCA_040403115.1ScaffoldJBBALH000000000SAMN40135782
EUL_058
GCA_040402755.1ScaffoldJBBALY000000000SAMN40135799
EUL_075
GCA_040399125.1ScaffoldJBBASR000000000SAMN40135974
EUL_250
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EUL_239
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EUL_233
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EUL_236
GCA_040399465.1ScaffoldJBBASB000000000SAMN40135958
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EUL_214
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EUL_280
GCA_040399085.1ScaffoldJBBASV000000000SAMN40135978
EUL_254
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EUL_255
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EUL_256
GCA_040398285.1ScaffoldJBBAUK000000000SAMN40136019
EUL_295
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EUL_294
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EUL_027
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EUL_181
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EUL_197
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EUL_053
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EUL_069
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EUL_048
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EUL_067
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EUL_068
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EUL_071
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EUL_073
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EUL_072
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EUL_074
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EUL_062
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EUL_196
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EUL_216
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EUL_286
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EUL_031
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EUL_284
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EUL_285
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EUL_221
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EUL_283
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EUL_109
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EUL_112
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EUL_113
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EUL_111
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EUL_114
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EUL_117
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EUL_116
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EUL_119
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EUL_118
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EUL_120
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EUL_125
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EUL_123
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EUL_001
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EUL_263
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EUL_262
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EUL_361
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EUL_318
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EUL_316
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EUL_305
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EUL_306
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EUL_307
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EUL_308
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EUL_309
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EUL_310
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EUL_311
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EUL_314
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EUL_313
GCA_040397905.1ScaffoldJBBAVE000000000SAMN40136039
EUL_315
GCA_040397865.1ScaffoldJBBAVB000000000SAMN40136036
EUL_312
GCA_040398145.1ScaffoldJBBAUT000000000SAMN40136028
EUL_304
GCA_040398105.1ScaffoldJBBAUS000000000SAMN40136027
EUL_303
GCA_040397805.1ScaffoldJBBAVG000000000SAMN40136041
EUL_317
GCA_040399065.1ScaffoldJBBASU000000000SAMN40135977
EUL_253
GCA_040401635.1ScaffoldJBBAOD000000000SAMN40135856
EUL_132
GCA_040401615.1ScaffoldJBBAOG000000000SAMN40135859
EUL_135
GCA_040396935.1ScaffoldJBBAXA000000000SAMN40136087
EUL_363
GCA_040398345.1ScaffoldJBBAUG000000000SAMN40136015
EUL_291
GCA_040400245.1ScaffoldJBBAQO000000000SAMN40135919
EUL_195
GCA_040400305.1ScaffoldJBBAQL000000000SAMN40135916
EUL_192
GCA_040400285.1ScaffoldJBBAQN000000000SAMN40135918
EUL_194
GCA_040400345.1ScaffoldJBBAQM000000000SAMN40135917
EUL_193
GCA_040397765.1ScaffoldJBBAVL000000000SAMN40136046
EUL_322
GCA_040397685.1ScaffoldJBBAVM000000000SAMN40136047
EUL_323
GCA_040397665.1ScaffoldJBBAVP000000000SAMN40136050
EUL_326
GCA_040397635.1ScaffoldJBBAVO000000000SAMN40136049
EUL_325
GCA_040397625.1ScaffoldJBBAVQ000000000SAMN40136051
EUL_327
GCA_040397585.1ScaffoldJBBAVS000000000SAMN40136053
EUL_329
GCA_040397595.1ScaffoldJBBAVR000000000SAMN40136052
EUL_328
GCA_040397565.1ScaffoldJBBAVU000000000SAMN40136055
EUL_331
GCA_040397545.1ScaffoldJBBAVV000000000SAMN40136056
EUL_332
GCA_040397525.1ScaffoldJBBAVT000000000SAMN40136054
EUL_330
GCA_040397725.1ScaffoldJBBAVN000000000SAMN40136048
EUL_324
GCA_040400815.1ScaffoldJBBAPN000000000SAMN40135892
EUL_168
GCA_040400775.1ScaffoldJBBAPP000000000SAMN40135894
EUL_170
GCA_040400945.1ScaffoldJBBAPG000000000SAMN40135885
EUL_161
GCA_040400935.1ScaffoldJBBAPH000000000SAMN40135886
EUL_162
GCA_040403635.1ScaffoldJBBAKF000000000SAMN40135754
EUL_030
GCA_040400485.1ScaffoldJBBAQE000000000SAMN40135909
EUL_185
GCA_040400535.1ScaffoldJBBAQC000000000SAMN40135907
EUL_183
GCA_040400365.1ScaffoldJBBAQJ000000000SAMN40135914
EUL_190
GCA_040400325.1ScaffoldJBBAQK000000000SAMN40135915
EUL_191
GCA_040400455.1ScaffoldJBBAQF000000000SAMN40135910
EUL_186
GCA_040400435.1ScaffoldJBBAQH000000000SAMN40135912
EUL_188
GCA_040400415.1ScaffoldJBBAQG000000000SAMN40135911
EUL_187
GCA_040400395.1ScaffoldJBBAQI000000000SAMN40135913
EUL_189
GCA_040399545.1ScaffoldJBBARW000000000SAMN40135953
EUL_229
GCA_040399225.1ScaffoldJBBASN000000000SAMN40135970
EUL_246
GCA_040399185.1ScaffoldJBBASQ000000000SAMN40135973
EUL_249
GCA_040399285.1ScaffoldJBBASM000000000SAMN40135969
EUL_245
GCA_040399265.1ScaffoldJBBASO000000000SAMN40135971
EUL_247
GCA_040399325.1ScaffoldJBBASJ000000000SAMN40135966
EUL_242
GCA_040400795.1ScaffoldJBBAPO000000000SAMN40135893
EUL_169
GCA_040400575.1ScaffoldJBBAPX000000000SAMN40135902
EUL_178
GCA_040400755.1ScaffoldJBBAPQ000000000SAMN40135895
EUL_171
GCA_040400735.1ScaffoldJBBAPS000000000SAMN40135897
EUL_173
GCA_040400715.1ScaffoldJBBAPT000000000SAMN40135898
EUL_174
GCA_040400695.1ScaffoldJBBAPU000000000SAMN40135899
EUL_175
GCA_040400675.1ScaffoldJBBAPR000000000SAMN40135896
EUL_172
GCA_040400655.1ScaffoldJBBAPV000000000SAMN40135900
EUL_176
GCA_040400635.1ScaffoldJBBAPY000000000SAMN40135903
EUL_179
GCA_040400595.1ScaffoldJBBAPW000000000SAMN40135901
EUL_177
GCA_040402555.1ScaffoldJBBAMK000000000SAMN40135811
EUL_087
GCA_040402535.1ScaffoldJBBAMJ000000000SAMN40135810
EUL_086
GCA_040402515.1ScaffoldJBBAML000000000SAMN40135812
EUL_088
GCA_040402495.1ScaffoldJBBAMO000000000SAMN40135815
EUL_091
GCA_040402455.1ScaffoldJBBAMN000000000SAMN40135814
EUL_090
GCA_040402475.1ScaffoldJBBAMM000000000SAMN40135813
EUL_089
GCA_040402435.1ScaffoldJBBAMP000000000SAMN40135816
EUL_092
GCA_040399605.1ScaffoldJBBARU000000000SAMN40135951
EUL_227
GCA_040396955.1ScaffoldJBBAWX000000000SAMN40136084
EUL_360
GCA_040397035.1ScaffoldJBBAWW000000000SAMN40136083
EUL_359
GCA_040398485.1ScaffoldJBBAUC000000000SAMN40136011
EUL_287
GCA_040400855.1ScaffoldJBBAPJ000000000SAMN40135888
EUL_164
GCA_040400915.1ScaffoldJBBAPI000000000SAMN40135887
EUL_163
GCA_040398705.1ScaffoldJBBATO000000000SAMN40135997
EUL_273
GCA_040398685.1ScaffoldJBBATP000000000SAMN40135998
EUL_274
GCA_040398645.1ScaffoldJBBATR000000000SAMN40136000
EUL_276
GCA_040398665.1ScaffoldJBBATQ000000000SAMN40135999
EUL_275
GCA_040397785.1ScaffoldJBBAVI000000000SAMN40136043
EUL_319
GCA_040401995.1ScaffoldJBBANM000000000SAMN40135839
EUL_115
GCA_040403435.1ScaffoldJBBAKQ000000000SAMN40135765
EUL_041
GCA_040403745.1ScaffoldJBBAKB000000000SAMN40135750
EUL_026
GCA_040398405.1ScaffoldJBBAUD000000000SAMN40136012
EUL_288
GCA_040398385.1ScaffoldJBBAUE000000000SAMN40136013
EUL_289
GCA_040403595.1ScaffoldJBBAKI000000000SAMN40135757
EUL_033
GCA_040403765.1ScaffoldJBBAJZ000000000SAMN40135748
EUL_024
GCA_040403675.1ScaffoldJBBAKJ000000000SAMN40135758
EUL_034
GCA_040403655.1ScaffoldJBBAKH000000000SAMN40135756
EUL_032
GCA_040403975.1ScaffoldJBBAJS000000000SAMN40135741
EUL_017
GCA_040403945.1ScaffoldJBBAJQ000000000SAMN40135739
EUL_015
GCA_040403925.1ScaffoldJBBAJV000000000SAMN40135744
EUL_020
GCA_040403885.1ScaffoldJBBAJX000000000SAMN40135746
EUL_022
GCA_040403905.1ScaffoldJBBAJT000000000SAMN40135742
EUL_018
GCA_040403865.1ScaffoldJBBAJW000000000SAMN40135745
EUL_021
GCA_040403845.1ScaffoldJBBAJU000000000SAMN40135743
EUL_019
GCA_040403825.1ScaffoldJBBAJY000000000SAMN40135747
EUL_023
GCA_040404025.1ScaffoldJBBAJR000000000SAMN40135740
EUL_016
GCA_040398225.1ScaffoldJBBAUN000000000SAMN40136022
EUL_298
GCA_040399005.1ScaffoldJBBATA000000000SAMN40135983
EUL_259
GCA_040398965.1ScaffoldJBBASZ000000000SAMN40135982
EUL_258
GCA_040398165.1ScaffoldJBBAUP000000000SAMN40136024
EUL_300
GCA_040398125.1ScaffoldJBBAUQ000000000SAMN40136025
EUL_301
GCA_040403555.1ScaffoldJBBAKN000000000SAMN40135762
EUL_038
GCA_040403575.1ScaffoldJBBAKK000000000SAMN40135759
EUL_035
GCA_040398505.1ScaffoldJBBATX000000000SAMN40136006
EUL_282
GCA_040398725.1ScaffoldJBBATN000000000SAMN40135996
EUL_272
GCA_040398745.1ScaffoldJBBATM000000000SAMN40135995
EUL_271
GCA_040400835.1ScaffoldJBBAPM000000000SAMN40135891
EUL_167
GCA_040399585.1ScaffoldJBBARY000000000SAMN40135955
EUL_231
GCA_040399555.1ScaffoldJBBARX000000000SAMN40135954
EUL_230
GCA_040397325.1ScaffoldJBBAWF000000000SAMN40136066
EUL_342
GCA_040399205.1ScaffoldJBBASP000000000SAMN40135972
EUL_248
GCA_040404225.1ScaffoldJBBAJD000000000SAMN40135726
EUL_002
SRA Data Details
ParameterValue
Data volume, Gbases659
Data volume, Tbytes0.26

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