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Accession: PRJNA1093465 ID: 1093465

gut bacteria

human gut bacterial isolate genomes Genome sequencing and assembly

This genome collection contains multiple species from a given individual as well as multiple strains of each species and multiple isolates of each strains.
AccessionPRJNA1093465
Data TypeGenome sequencing
ScopeMultispecies
Publications
  • Published online: Chen-Liaw A et al., "Gut microbiota bacterial strain richness is species specific and limits therapeutic engraftment", bioRxiv, 2022;
SubmissionRegistration date: 29-Mar-2024
Icahn School of Medicine at Mount Sinai
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1994
Other datasets
BioSample2213
Assembly1994
Assembly details:
Assembly levelNumber of Assemblies
1911
81
1992
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_040913705.1ScaffoldJBDFUG000000000SAMN41007576
RTP21358st1_H4_RTP21358_211008
GCA_040919805.1ScaffoldJBCOUU000000000SAMN41030683
RTP31023st1_F2_RTP31023_210422
GCA_040914705.1ScaffoldJBCPEY000000000SAMN41018669
RTP21281st1_B9_RTP21281_210402
GCA_040909645.1ScaffoldJBDGCD000000000SAMN41007781
RTP21359st1_A2_RTP21359_211015
GCA_040909605.1ScaffoldJBDGCE000000000SAMN41007782
RTP21359st1_G5_RTP21360_211022
GCA_040909585.1ContigJBDGCF000000000SAMN41007783
RTP21360st1_B3_RTP21360_211022
GCA_039751635.1ScaffoldJBDMEM000000000SAMN41372053
RTP31015st1_B6_RTP31015_201113
GCA_039751555.1ScaffoldJBDMEL000000000SAMN41372054
RTP31015st1_G3_RTP31015_201113
GCA_039751535.1ScaffoldJBDMEK000000000SAMN41372055
RTP31015st1_H6_RTP31015_201113
GCA_039733425.1ScaffoldJBDMEJ000000000SAMN41372056
RTP31015st1_H8_RTP31015_201113
GCA_039031295.1ScaffoldJBCIUJ000000000SAMN40657066
RTP31141st1_F9_RTP31141_220114
GCA_039066465.1ScaffoldJBCJEZ000000000SAMN41062787
2218st1_C6_2218SCRN_220325
GCA_039066425.1ScaffoldJBCJFA000000000SAMN41062786
2218st1_A7_2218SCRN_220325
GCA_039066385.1ScaffoldJBCJEY000000000SAMN41062788
2218st1_D7_2218SCRN_220325
GCA_039066375.1ScaffoldJBCJEX000000000SAMN41062789
2218st1_G7_2218SCRN_220325
GCA_039756655.1ScaffoldJBDMOV000000000SAMN41371761
RTP31002st1_D10_RTP31002_201218
GCA_039066285.1ScaffoldJBCJEV000000000SAMN41062791
1033st1_C6_1033SCRN_220408
GCA_039066185.1ScaffoldJBCJEW000000000SAMN41062790
1033st1_B5_1033SCRN_220408
GCA_039946735.1ScaffoldJBDOJZ000000000SAMN41371756
RTP21489st1_D3_RTP21489_200313
GCA_039946715.1ScaffoldJBDOJY000000000SAMN41371757
RTP21489st1_F3_RTP21489_200313
GCA_039946695.1ScaffoldJBDOJW000000000SAMN41371759
RTP21489st1_G2_RTP21489_200313
GCA_039946675.1ContigJBDOJX000000000SAMN41371758
RTP21489st1_F9_RTP21489_200313
GCA_039946635.1ScaffoldJBDOJV000000000SAMN41371760
RTP21489st1_H8_RTP21489_200313
GCA_039756615.1ScaffoldJBDMOU000000000SAMN41371762
RTP21489st1_A3_RTP21489_200313
GCA_039756595.1ScaffoldJBDMOS000000000SAMN41371764
RTP21489st1_B7_RTP21489_200313
GCA_039756575.1ScaffoldJBDMOT000000000SAMN41371763
RTP21489st1_B5_RTP21489_200313
GCA_039756555.1ScaffoldJBDMOR000000000SAMN41371765
RTP21489st1_D4_RTP21489_200313
GCA_039756535.1ScaffoldJBDMOQ000000000SAMN41371766
RTP31015st1_D4_RTP31015_201113
GCA_040913665.1ScaffoldJBDFUH000000000SAMN41007577
RTP21358st1_F6_RTP21358_211008
GCA_040924105.1ScaffoldJBCOMP000000000SAMN41030470
RTP31004st1_A6_RTP31004_210507
GCA_040930045.1ScaffoldJBCOBH000000000SAMN41034992
RTP21277st1_H2_RTP21277_210401
GCA_040913675.1ScaffoldJBDFUI000000000SAMN41007578
RTP21357st1_D4_RTP21357_210408
GCA_040913605.1ContigJBDFUL000000000SAMN41007581
RTP21358st1_G5_RTP21358_211008
GCA_040913635.1ScaffoldJBDFUJ000000000SAMN41007579
RTP21358st1_E2_RTP21358_211008
GCA_040913615.1ScaffoldJBDFUK000000000SAMN41007580
RTP21358st1_G4_RTP21358_211008
GCA_040913585.1ScaffoldJBDFUM000000000SAMN41007582
RTP21358st1_H6_RTP21358_211008
GCA_039756495.1ScaffoldJBDMOO000000000SAMN41371768
RTP31081st1_F5_RTP31081_211007
GCA_039756515.1ScaffoldJBDMON000000000SAMN41371769
RTP31081st1_F6_RTP31081_211007
GCA_039756475.1ScaffoldJBDMOP000000000SAMN41371767
RTP31081st1_C5_RTP31081_211007
GCA_039762225.1ScaffoldJBDMXV000000000SAMN41375996
RTP21485st1_G6_RTP21485_190125
GCA_039762215.1ScaffoldJBDMXW000000000SAMN41375995
RTP21485st1_A5_RTP21485_190125
GCA_039733945.1ScaffoldJBDMOM000000000SAMN41371770
RTP31081st1_G3_RTP31081_211007
GCA_040930025.1ScaffoldJBCOBI000000000SAMN41034993
RTP21230st1_C9_RTP21230_210325
GCA_040924145.1ScaffoldJBCOMQ000000000SAMN41030471
RTP31004st1_D12_RTP31004_210507
GCA_040919045.1ScaffoldJBCOWN000000000SAMN41018450
RTP21276st1_D1_RTP21276_210326
GCA_040929945.1ContigJBCOBJ000000000SAMN41034994
RTP21002st1_C8_RTP21002_201210
GCA_039946655.1ScaffoldJBDOJU000000000SAMN41371775
RTP31002st1_G3_RTP31002_201218
GCA_039762135.1ScaffoldJBDMXU000000000SAMN41375997
1001217st1_B4_1001217B_150727
GCA_039762095.1ScaffoldJBDMXT000000000SAMN41375998
1001217st1_E7_1001217B_191108
GCA_039756455.1ScaffoldJBDMOK000000000SAMN41371772
D41st1_E4_RTP21400_201112
GCA_039756435.1ScaffoldJBDMOJ000000000SAMN41371773
D41st1_F3_RTP21400_201112
GCA_039756415.1ScaffoldJBDMOL000000000SAMN41371771
D41st1_C9_RTP21400_201112
GCA_039756375.1ScaffoldJBDMOI000000000SAMN41371774
RTP31002st1_G10_RTP31002_201218
GCA_040919065.1ScaffoldJBCOWO000000000SAMN41018451
RTP21281st1_H7_RTP21281_210402
GCA_040929925.1ScaffoldJBCOBL000000000SAMN41034996
RTP21230st1_D7_RTP21230_210325
GCA_040929905.1ScaffoldJBCOBK000000000SAMN41034995
RTP21230st1_C6_RTP21230_210325
GCA_040929845.1ScaffoldJBCOBM000000000SAMN41034997
RTP21230st1_F12_RTP21230_210325
GCA_040913545.1ScaffoldJBDFUN000000000SAMN41007583
RTP21358st1_D5_RTP21358_211008
GCA_040914665.1ScaffoldJBCPEZ000000000SAMN41018670
1001713sp1_RTP21281st1_F8_RTP21281_210402
GCA_040910645.1ScaffoldJBDGAD000000000SAMN41007729
RTP21358sp1_RTP21358st1_F9_RTP21358_211008
GCA_040910665.1ScaffoldJBDGAE000000000SAMN41007730
RTP21358sp1_RTP21358st2_G1_RTP21358_211008
GCA_040910465.1ScaffoldJBDGAM000000000SAMN41007738
RTP21359st1_B11_RTP21359_211015
GCA_040910445.1ScaffoldJBDGAN000000000SAMN41007739
RTP21359st1_E4_RTP21359_211015
GCA_040929805.1ScaffoldJBCOBQ000000000SAMN41035001
RTP21002st1_E3_RTP21002_201210
GCA_040929785.1ScaffoldJBCOBR000000000SAMN41035002
RTP21002st1_G3_RTP21002_201210
GCA_040929765.1ScaffoldJBCOBV000000000SAMN41035006
RTP21277st1_E8_RTP21277_210401
GCA_040929745.1ScaffoldJBCOBS000000000SAMN41035003
RTP21230st1_B1_RTP21230_210325
GCA_040929725.1ScaffoldJBCOBT000000000SAMN41035004
RTP21277st1_B1_RTP21277_210401
GCA_040929705.1ScaffoldJBCOBW000000000SAMN41035007
RTP21277st1_F8_RTP21277_210401
GCA_040929685.1ScaffoldJBCOBU000000000SAMN41035005
RTP21277st1_D1_RTP21277_210401
GCA_040929865.1ScaffoldJBCOBO000000000SAMN41034999
2201st1_H4_2201SCRN_220225
GCA_040929875.1ScaffoldJBCOBN000000000SAMN41034998
2201st1_D10_2201SCRN_220225
GCA_040929825.1ScaffoldJBCOBP000000000SAMN41035000
RTP21002st1_E11_RTP21002_201210
GCA_040924065.1ScaffoldJBCOMR000000000SAMN41030472
RTP21002st1_B5_RTP31004_210507
GCA_040924045.1ScaffoldJBCOMS000000000SAMN41030473
RTP21002st1_E2_RTP31004_210507
GCA_040924015.1ScaffoldJBCOMT000000000SAMN41030474
RTP21002st1_E4_RTP31004_210507
GCA_040924005.1ScaffoldJBCOMU000000000SAMN41030475
RTP21002st1_E6_RTP31004_210507
GCA_040923985.1ScaffoldJBCOMV000000000SAMN41030476
RTP31023st1_B1_RTP31023_210422
GCA_040923965.1ScaffoldJBCOMX000000000SAMN41030478
RTP31036st1_E5_RTP31023_210422
GCA_040923945.1ScaffoldJBCOMW000000000SAMN41030477
RTP31023st1_B5_RTP31023_210422
GCA_040923915.1ScaffoldJBCONB000000000SAMN41030482
RTP31084st1_F12_RTP31084_210423
GCA_040923905.1ScaffoldJBCONA000000000SAMN41030481
RTP31084st1_E8_RTP31084_210423
GCA_040923885.1ScaffoldJBCOMY000000000SAMN41030479
RTP31084st1_C3_RTP31084_210423
GCA_040923865.1ScaffoldJBCOMZ000000000SAMN41030480
RTP31084st1_C4_RTP31084_210423
GCA_040923845.1ScaffoldJBCOND000000000SAMN41030484
RTP31084st1_H2_RTP31084_210423
GCA_040918985.1ScaffoldJBCOWS000000000SAMN41018455
RTP21102st1_B2_RTP21276_210326
GCA_040918945.1ContigJBCOWU000000000SAMN41018457
RTP21102st1_C5_RTP21102_210122
GCA_040918925.1ScaffoldJBCOWT000000000SAMN41018456
RTP21102st1_C3_RTP21102_210122
GCA_040918905.1ScaffoldJBCOWV000000000SAMN41018458
RTP21102st1_D9_RTP21102_210122
GCA_040918885.1ScaffoldJBCOWW000000000SAMN41018459
RTP21102st1_F12_RTP21102_210122
GCA_040918865.1ScaffoldJBCOWZ000000000SAMN41018462
RTP21102st1_H4_RTP21102_210122
GCA_040918845.1ScaffoldJBCOWX000000000SAMN41018460
RTP21102st1_G1_RTP21102_210122
GCA_040918825.1ScaffoldJBCOWY000000000SAMN41018461
RTP21102st1_H2_RTP21276_210326
GCA_040923805.1ScaffoldJBCONC000000000SAMN41030483
RTP31084st1_G12_RTP31084_210423
GCA_039762075.1ScaffoldJBDMXR000000000SAMN41376000
BSD3178071175st1_B8_BSD3178071176_160815
GCA_039762045.1ScaffoldJBDMXQ000000000SAMN41376001
RTP21191st1_A7_RTP21485_190125
GCA_039761975.1ScaffoldJBDMXP000000000SAMN41376002
RTP21191st1_C5_RTP21485_190125
GCA_039762115.1ScaffoldJBDMXS000000000SAMN41375999
BSD3178071175st1_A7_BSD3178071176_160815
GCA_039756355.1ScaffoldJBDMOG000000000SAMN41371777
RTP31015st1_F6_RTP31015_201113
GCA_039756325.1ScaffoldJBDMOF000000000SAMN41371778
RTP31015st1_F8_RTP31015_201113
GCA_039756395.1ScaffoldJBDMOH000000000SAMN41371776
RTP31015st1_F2_RTP31015_201113
GCA_040913525.1ScaffoldJBDFUP000000000SAMN41007585
RTP21357st1_C11_RTP21357_210408
GCA_040913505.1ScaffoldJBDFUQ000000000SAMN41007586
RTP21357st1_G10_RTP21357_210408
GCA_040913485.1ScaffoldJBDFUS000000000SAMN41007588
RTP21358st1_C3_RTP21358_211008
GCA_040913445.1ScaffoldJBDFUT000000000SAMN41007589
RTP21358st1_E1_RTP21358_211008
GCA_040913455.1ScaffoldJBDFUR000000000SAMN41007587
RTP21357st1_G4_RTP21357_210408
GCA_040913405.1ScaffoldJBDFUU000000000SAMN41007590
RTP21359st1_G4_RTP21359_211015
GCA_040913565.1ScaffoldJBDFUO000000000SAMN41007584
RTP21357st1_A1_RTP21357_210408
GCA_040923785.1ScaffoldJBCONE000000000SAMN41030485
RTP31003st1_C4_RTP31004_210507
GCA_040923765.1ScaffoldJBCONH000000000SAMN41030488
RTP31003st1_F11_RTP31004_210507
GCA_040923745.1ScaffoldJBCONJ000000000SAMN41030490
RTP31023st1_G10_RTP31023_210422
GCA_040923725.1ScaffoldJBCONG000000000SAMN41030487
RTP31003st1_E1_RTP31004_210507
GCA_040923705.1ScaffoldJBCONK000000000SAMN41030491
RTP31023st1_H1_RTP31023_210422
GCA_040923685.1ScaffoldJBCONI000000000SAMN41030489
RTP31003st1_F3_RTP31004_210507
GCA_040923825.1ScaffoldJBCONF000000000SAMN41030486
RTP31003st1_D3_RTP31003_210430
GCA_040929665.1ScaffoldJBCOBX000000000SAMN41035008
2201st1_C12_2201SCRN_220225
GCA_040929645.1ScaffoldJBCOBY000000000SAMN41035009
2201st1_D7_2201SCRN_220225
GCA_040929625.1ScaffoldJBCOBZ000000000SAMN41035010
RTP21198st1_A1_RTP21230_210325
GCA_040929605.1ScaffoldJBCOCA000000000SAMN41035011
RTP21198st1_E1_RTP21230_210325
GCA_040929585.1ScaffoldJBCOCB000000000SAMN41035012
RTP21198st1_E2_RTP21230_210325
GCA_040929565.1ScaffoldJBCOCC000000000SAMN41035013
RTP21198st1_E8_RTP21198_201120
GCA_040929545.1ScaffoldJBCOCD000000000SAMN41035014
RTP21198st1_G3_RTP21198_201120
GCA_040929515.1ScaffoldJBCOCE000000000SAMN41035015
RTP21198st1_H8_RTP21230_210325
GCA_039756315.1ContigJBDMOD000000000SAMN41371780
RTP31081st1_D3_RTP31081_211007
GCA_039756295.1ScaffoldJBDMOE000000000SAMN41371779
RTP31081st1_C12_RTP31081_211007
GCA_039756275.1ScaffoldJBDMOC000000000SAMN41371781
RTP31081st1_H7_RTP31081_211007
GCA_039761935.1ScaffoldJBDMXL000000000SAMN41376006
1010st1_F6_1010SCRN_200918
GCA_039761915.1ScaffoldJBDMXM000000000SAMN41376005
1010st1_B8_1010SCRN_200918
GCA_040929285.1ScaffoldJBCOCQ000000000SAMN41035027
RTP21002st1_A5_RTP21002_201210
GCA_040929265.1ScaffoldJBCOCR000000000SAMN41035028
RTP21002st1_B3_RTP21002_201210
GCA_040923605.1ScaffoldJBCONP000000000SAMN41030496
RTP21002st1_B4_RTP31004_210507
GCA_040923585.1ScaffoldJBCONO000000000SAMN41030495
RTP21002st1_B4_RTP31003_210430
GCA_040923565.1ScaffoldJBCONQ000000000SAMN41030497
RTP21002st1_C6_RTP31004_210507
GCA_040923545.1ScaffoldJBCONS000000000SAMN41030499
RTP21002st1_G1_RTP31004_210507
GCA_040923525.1ScaffoldJBCONR000000000SAMN41030498
RTP21002st1_F12_RTP31004_210507
GCA_040923505.1ScaffoldJBCONV000000000SAMN41030502
RTP31023st1_H10_RTP31023_210422
GCA_040923425.1ScaffoldJBCONU000000000SAMN41030501
RTP31023st1_A4_RTP31023_210422
GCA_040923445.1ScaffoldJBCONT000000000SAMN41030500
RTP21002st1_H4_RTP31004_210507
GCA_039761855.1ScaffoldJBDMXK000000000SAMN41376007
D43st1_F12_D43t1_170807
GCA_039755855.1ScaffoldJBDMNH000000000SAMN41371802
D59st1_C3_RTP31015_201113
GCA_039065535.1ScaffoldJBCJEE000000000SAMN41062808
2227st1_F2_2227SCRN_220401
GCA_039065475.1ScaffoldJBCJEF000000000SAMN41062807
2227st1_B4_2227SCRN_220401
GCA_039065325.1ScaffoldJBCJED000000000SAMN41062809
2227st1_H11_2227SCRN_220401
GCA_039733905.1ScaffoldJBDMNG000000000SAMN41371803
RTP21400st1_H1_RTP21400_201112
GCA_040913415.1ScaffoldJBDFUW000000000SAMN41007592
RTP21358st1_H11_RTP21358_211008
GCA_040913365.1ScaffoldJBDFUV000000000SAMN41007591
RTP21358st1_B8_RTP21358_211008
GCA_040918805.1ScaffoldJBCOXA000000000SAMN41018463
D6st1_C2_RTP21065_210128
GCA_040923455.1ScaffoldJBCONW000000000SAMN41030503
RTP31084st1_B1_RTP31084_210423
GCA_040923345.1ScaffoldJBCOOB000000000SAMN41030508
RTP31084st1_G4_RTP31084_210423
GCA_040923405.1ScaffoldJBCONY000000000SAMN41030505
RTP31084st1_D9_RTP31084_210423
GCA_040923385.1ScaffoldJBCONZ000000000SAMN41030506
RTP31084st1_E11_RTP31084_210423
GCA_040923485.1ScaffoldJBCONX000000000SAMN41030504
RTP31084st1_B6_RTP31084_210423
GCA_040923305.1ScaffoldJBCOOA000000000SAMN41030507
RTP31084st1_G2_RTP31084_210423
GCA_040929245.1ScaffoldJBCOCS000000000SAMN41035029
RTP21198st1_G7_RTP21198_201120
GCA_040913375.1ScaffoldJBDFUX000000000SAMN41007593
RTP21360st1_B1_RTP21360_211022
GCA_040913345.1ScaffoldJBDFUY000000000SAMN41007594
RTP21360st1_F3_RTP21360_211022
GCA_040913325.1ScaffoldJBDFUZ000000000SAMN41007595
RTP31078st1_F7_RTP21357_210408
GCA_040913305.1ScaffoldJBDFVB000000000SAMN41007597
RTP31078st1_H10_RTP21357_210408
GCA_040913245.1ScaffoldJBDFVA000000000SAMN41007596
RTP31078st1_F9_RTP21357_210408
GCA_039946615.1ScaffoldJBDOJT000000000SAMN41371804
RTP21400st1_A9_RTP21400_201112
GCA_039755835.1ScaffoldJBDMNE000000000SAMN41371806
RTP21486st1_A10_RTP21489_200313
GCA_039755815.1ScaffoldJBDMNC000000000SAMN41371808
RTP21486st1_E4_RTP21489_200313
GCA_039755795.1ScaffoldJBDMND000000000SAMN41371807
RTP21486st1_C2_RTP21489_200313
GCA_039755775.1ScaffoldJBDMNB000000000SAMN41371809
RTP21486st1_F2_RTP21489_200313
GCA_039755755.1ScaffoldJBDMMZ000000000SAMN41371811
RTP31015st1_F1_RTP31015_201113
GCA_039755735.1ScaffoldJBDMNA000000000SAMN41371810
RTP21486st1_H7_RTP21489_200313
GCA_039761815.1ScaffoldJBDMXG000000000SAMN41376012
1010st1_H5_1010SCRN_200918
GCA_039761795.1ScaffoldJBDMXJ000000000SAMN41376009
1010st1_A6_1010SCRN_200918
GCA_039761775.1ScaffoldJBDMXF000000000SAMN41376013
2226st1_A6_2226SCRN_200925
GCA_039761755.1ScaffoldJBDMXI000000000SAMN41376010
1010st1_E5_1010SCRN_200918
GCA_039761675.1ScaffoldJBDMXH000000000SAMN41376011
1010st1_G7_1010SCRN_200918
GCA_039761655.1ScaffoldJBDMXC000000000SAMN41376016
BSD2780061687st1_B8_BSD2780061687_150420
GCA_039761635.1ScaffoldJBDMXE000000000SAMN41376014
BSD2780061687st1_A10_BSD2780061687_150420
GCA_039761595.1ScaffoldJBDMXD000000000SAMN41376015
BSD2780061687st1_B11_BSD2780061687_150420
GCA_039761575.1ScaffoldJBDMXB000000000SAMN41376017
BSD2780061687st1_G7_BSD2780061687_150420
GCA_039755895.1ScaffoldJBDMNF000000000SAMN41371805
RTP21400st1_G9_RTP21400_201112
GCA_039065275.1ScaffoldJBCJEC000000000SAMN41062810
2227st1_B2_2227SCRN_220401
GCA_039065265.1ContigJBCJEB000000000SAMN41062811
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