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Accession: PRJNA1143568 ID: 1143568

Healthy chicken microbiome

In this study, we are targeting to investigate the microbiome from healthy chicken.
AccessionPRJNA1143568
Data TypeGenome sequencing
ScopeMultispecies
SubmissionRegistration date: 2-Aug-2024
McGill University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)150
SRA Experiments170
Other datasets
BioSample156
Assembly150
Assembly details:
Assembly levelNumber of Assemblies
150
150
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_041359515.1ContigJBGJLW000000000SAMN43103439
4-AB0-25
GCA_041359795.1ContigJBGJMI000000000SAMN43103427
J-D0-47
GCA_041477285.1ContigJBGNWU000000000SAMN43013289
Ae14
GCA_041359315.1ContigJBGJLK000000000SAMN43103451
5-AB21-49
GCA_041359255.1ContigJBGJLJ000000000SAMN43103452
5-AB21-65
GCA_041359675.1ContigJBGJMA000000000SAMN43103435
S1-B1-39
GCA_041359215.1ContigJBGJLE000000000SAMN43103457
J-D0-37
GCA_041361355.1ContigJBGJOY000000000SAMN43067032
J-D0-20
GCA_041359425.1ContigJBGJLR000000000SAMN43103444
4-AB0-8
GCA_041359495.1ContigJBGJLT000000000SAMN43103442
4-AB0-52
GCA_041359595.1ContigJBGJLV000000000SAMN43103440
4-AB0-37
GCA_041358435.1ContigJBGJJR000000000SAMN43082544
S2-B2-17
GCA_041358415.1ContigJBGJJS000000000SAMN43082543
S2-AN2-7
GCA_041358395.1ContigJBGJJQ000000000SAMN43082545
S2-B2-18
GCA_041358355.1ContigJBGJJP000000000SAMN43082546
S2-B2-22
GCA_041358475.1ContigJBGJJT000000000SAMN43082542
S2-AN2-6
GCA_041358315.1ContigJBGJJL000000000SAMN43082550
S3-AB7-61
GCA_041358295.1ContigJBGJJM000000000SAMN43082549
S3-AB7-43
GCA_041358275.1ContigJBGJJK000000000SAMN43082551
S3-AN0-1
GCA_041358255.1ContigJBGJJI000000000SAMN43082553
S3-AN0-28
GCA_041358235.1ContigJBGJJH000000000SAMN43082554
S3-AN0-39
GCA_041358215.1ContigJBGJJG000000000SAMN43082555
S3-AN0-9
GCA_041358195.1ContigJBGJJJ000000000SAMN43082552
S3-AN0-22
GCA_041360675.1ContigJBGJNY000000000SAMN43103385
S6-AB0-6
GCA_041361235.1ContigJBGJOV000000000SAMN43103362
S3-AB0-31
GCA_041361265.1ContigJBGJOW000000000SAMN43103361
S3-AB0-26
GCA_041361215.1ContigJBGJOT000000000SAMN43103364
S3-AB3-43
GCA_041361225.1ContigJBGJOU000000000SAMN43103363
S3-AB0-9
GCA_041361175.1ContigJBGJOR000000000SAMN43103366
S3-AB7-39
GCA_041361185.1ContigJBGJOP000000000SAMN43103368
S3-AN0-33
GCA_041361145.1ContigJBGJOS000000000SAMN43103365
S3-AB7-32
GCA_041361135.1ContigJBGJOQ000000000SAMN43103367
S3-AN0-15
GCA_041361115.1ContigJBGJOO000000000SAMN43103369
S4-AB0-12
GCA_041361055.1ContigJBGJOM000000000SAMN43103371
S4-AB0-3
GCA_041361065.1ContigJBGJON000000000SAMN43103370
S4-AB0-21
GCA_041361035.1ContigJBGJOK000000000SAMN43103373
S4-AB0-47
GCA_041361045.1ContigJBGJOL000000000SAMN43103372
S4-AB0-35
GCA_041361015.1ContigJBGJOJ000000000SAMN43103374
S4-AB0-5
GCA_041360985.1ContigJBGJOI000000000SAMN43103375
S4-AB0-67
GCA_041360975.1ContigJBGJOH000000000SAMN43103376
S4-AB0-87
GCA_041360935.1ContigJBGJOG000000000SAMN43103377
S4-AB0-88
GCA_041360915.1ContigJBGJOE000000000SAMN43103379
S4-AB3-11
GCA_041360925.1ContigJBGJOF000000000SAMN43103378
S4-AB14-21
GCA_041360885.1ContigJBGJOC000000000SAMN43103381
S4-AB3-29
GCA_041360835.1ContigJBGJOA000000000SAMN43103383
S6-AB0-16
GCA_041360845.1ContigJBGJOD000000000SAMN43103380
S4-AB3-21
GCA_041360855.1ContigJBGJOB000000000SAMN43103382
S5-AB21-52
GCA_041360815.1ContigJBGJNZ000000000SAMN43103384
S6-AB0-18
GCA_041359775.1ContigJBGJMJ000000000SAMN43103426
J-D0-40
GCA_041359815.1ContigJBGJMH000000000SAMN43103428
J-D0-51
GCA_041359735.1ContigJBGJMG000000000SAMN43103429
J-D0-52
GCA_041360035.1ContigJBGJMT000000000SAMN43103416
5-AN28-26
GCA_041360015.1ContigJBGJMU000000000SAMN43103415
5-AN0-37
GCA_041359995.1ContigJBGJMS000000000SAMN43103417
5-AN3-24
GCA_041359895.1ContigJBGJMR000000000SAMN43103418
6-AB0-2
GCA_041359975.1ContigJBGJMO000000000SAMN43103421
6-AB3-21
GCA_041359935.1ContigJBGJMQ000000000SAMN43103419
6-AB0-67
GCA_041359925.1ContigJBGJMP000000000SAMN43103420
6-AB3-16
GCA_041359905.1ContigJBGJMN000000000SAMN43103422
6-AB3-22
GCA_041359875.1ContigJBGJMM000000000SAMN43103423
6-AB3-29
GCA_041359855.1ContigJBGJMK000000000SAMN43103425
J-D0-31
GCA_041360595.1ContigJBGJNX000000000SAMN43103386
S6-AB3-1
GCA_041360605.1ContigJBGJNV000000000SAMN43103388
S6-AB3-41
GCA_041360525.1ContigJBGJNU000000000SAMN43103389
S6-AB3-5
GCA_041360575.1ContigJBGJNW000000000SAMN43103387
S6-AB3-13
GCA_041360545.1ContigJBGJNT000000000SAMN43103390
S6-AB3-59
GCA_041360495.1ContigJBGJNR000000000SAMN43103392
S6-AB3-79
GCA_041360415.1ContigJBGJNO000000000SAMN43103395
3-AB0-17
GCA_041360425.1ContigJBGJNP000000000SAMN43103394
2-B2-16
GCA_041360435.1ContigJBGJNN000000000SAMN43103396
3-AB7-25
GCA_041360515.1ContigJBGJNS000000000SAMN43103391
S6-AB3-67
GCA_041360465.1ContigJBGJNQ000000000SAMN43103393
2-AN2-45
GCA_041360395.1ContigJBGJNL000000000SAMN43103398
3-AB7-52
GCA_041360375.1ContigJBGJNM000000000SAMN43103397
3-AB7-29
GCA_041360355.1ContigJBGJNK000000000SAMN43103399
3-AN3-32
GCA_041360285.1ContigJBGJNH000000000SAMN43103402
4-AB3-26
GCA_041360295.1ContigJBGJNJ000000000SAMN43103400
4-AB14-3
GCA_041360275.1ContigJBGJNF000000000SAMN43103404
4-AB3-54
GCA_041360255.1ContigJBGJNG000000000SAMN43103403
4-AB3-40
GCA_041360305.1ContigJBGJNI000000000SAMN43103401
4-AB14-35
GCA_041360235.1ContigJBGJNE000000000SAMN43103405
5-AB21-42
GCA_041360155.1ContigJBGJNB000000000SAMN43103408
5-AB28-19
GCA_041360185.1ContigJBGJND000000000SAMN43103406
5-AB21-47
GCA_041360165.1ContigJBGJNC000000000SAMN43103407
5-AB21-60
GCA_041360055.1ContigJBGJMX000000000SAMN43103412
5-AB7-32
GCA_041360135.1ContigJBGJMZ000000000SAMN43103410
5-AB3-55
GCA_041360105.1ContigJBGJMV000000000SAMN43103414
5-AN0-30
GCA_041360085.1ContigJBGJMW000000000SAMN43103413
5-AB7-6
GCA_041360065.1ContigJBGJMY000000000SAMN43103411
5-AB7-15
GCA_041359395.1ContigJBGJLO000000000SAMN43103447
4-AB21-48
GCA_041359295.1ContigJBGJLH000000000SAMN43103454
6-AB0-3
GCA_041359275.1ContigJBGJLG000000000SAMN43103455
J-D0-08
GCA_041359355.1ContigJBGJLL000000000SAMN43103450
5-AB0-5
GCA_041359335.1ContigJBGJLM000000000SAMN43103449
5-AB0-43
GCA_041359535.1ContigJBGJLU000000000SAMN43103441
4-AB0-4
GCA_041359135.1ContigJBGJLC000000000SAMN43103459
J-D0-50
GCA_041359115.1ContigJBGJLB000000000SAMN43103460
J-D0-10
GCA_041358975.1ContigJBGJKT000000000SAMN43082516
S1-B1-16
GCA_041358955.1ContigJBGJKR000000000SAMN43082518
S1-B1-59
GCA_041358935.1ContigJBGJKS000000000SAMN43082517
S1-B1-24
GCA_041358915.1ContigJBGJKQ000000000SAMN43082519
S1-B1-63
GCA_041358895.1ContigJBGJKO000000000SAMN43082521
S1-B1-78
GCA_041358875.1ContigJBGJKP000000000SAMN43082520
S1-B1-65
GCA_041358855.1ContigJBGJKN000000000SAMN43082522
S1-B5-AE6
GCA_041358835.1ContigJBGJKM000000000SAMN43082523
S1-B5-AN11
GCA_041358805.1ContigJBGJKI000000000SAMN43082527
S1-B5-AN36
GCA_041358795.1ContigJBGJKJ000000000SAMN43082526
S1-B5-AN31
GCA_041358775.1ContigJBGJKK000000000SAMN43082525
S1-B5-AN3
GCA_041358755.1ContigJBGJKL000000000SAMN43082524
S1-B5-AN15
GCA_041358735.1ContigJBGJKF000000000SAMN43082530
S2-AN1-18
GCA_041358715.1ContigJBGJKH000000000SAMN43082528
S1-B5-AN40
GCA_041359035.1ContigJBGJKV000000000SAMN43103466
J15
GCA_041358675.1ContigJBGJKD000000000SAMN43082532
S2-AN1-29
GCA_041358655.1ContigJBGJKE000000000SAMN43082531
S2-AN1-26
GCA_041358615.1ContigJBGJKB000000000SAMN43082534
S2-AN2-16
GCA_041358595.1ContigJBGJKA000000000SAMN43082535
S2-AN2-19
GCA_041358575.1ContigJBGJJY000000000SAMN43082537
S2-AN2-33
GCA_041358555.1ContigJBGJJW000000000SAMN43082539
S2-AN2-38
GCA_041358535.1ContigJBGJJZ000000000SAMN43082536
S2-AN2-32
GCA_041358515.1ContigJBGJJX000000000SAMN43082538
S2-AN2-34
GCA_041358495.1ContigJBGJJV000000000SAMN43082540
S2-AN2-39
GCA_041358635.1ContigJBGJKC000000000SAMN43082533
S2-AN1-6
GCA_041358695.1ContigJBGJKG000000000SAMN43082529
S2-AN1-1
GCA_041360215.1ContigJBGJNA000000000SAMN43103409
5-AB3-26
GCA_041358335.1ContigJBGJJO000000000SAMN43082547
S3-AB0-44
GCA_041358455.1ContigJBGJJU000000000SAMN43082541
S2-AN2-40
GCA_041358375.1ContigJBGJJN000000000SAMN43082548
S3-AB0-47
GCA_041359755.1ContigJBGJMF000000000SAMN43103430
J-D0-61
GCA_041361285.1ContigJBGJOX000000000SAMN43067033
J-D0-44
GCA_041359155.1ContigJBGJLA000000000SAMN43103461
S1-B1-77
GCA_041359415.1ContigJBGJLP000000000SAMN43103446
4-AB21-27
GCA_041359195.1ContigJBGJLF000000000SAMN43103456
J-D0-23
GCA_041359015.1ContigJBGJKW000000000SAMN43103465
B1-07
GCA_041359075.1ContigJBGJKX000000000SAMN43103464
B1-05
GCA_041359095.1ContigJBGJKY000000000SAMN43103463
S2-B3-47
GCA_041359055.1ContigJBGJKZ000000000SAMN43103462
S2-B3-18
GCA_041359375.1ContigJBGJLN000000000SAMN43103448
4-AB21-9
GCA_041359455.1ContigJBGJLQ000000000SAMN43103445
4-AB0-81
GCA_041358995.1ContigJBGJKU000000000SAMN43103467
J35
GCA_041359235.1ContigJBGJLI000000000SAMN43103453
5-AB3-28
GCA_041359655.1ContigJBGJMC000000000SAMN43103433
S1-B1-11
GCA_041359695.1ContigJBGJMD000000000SAMN43103432
S1-B1-10
GCA_041359615.1ContigJBGJLZ000000000SAMN43103436
S1-B1-40
GCA_041359715.1ContigJBGJME000000000SAMN43103431
S1-B1-08
GCA_041359165.1ContigJBGJLD000000000SAMN43103458
J-D0-45
GCA_041359575.1ContigJBGJLY000000000SAMN43103437
S1-B1-56
GCA_041359835.1ContigJBGJML000000000SAMN43103424
J-D0-02
GCA_041359545.1ContigJBGJLX000000000SAMN43103438
2-AB0-20
GCA_041359475.1ContigJBGJLS000000000SAMN43103443
4-AB0-61
GCA_041359635.1ContigJBGJMB000000000SAMN43103434
J-D0-22
SRA Data Details
ParameterValue
Data volume, Gbases125
Data volume, Mbytes54313

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