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Accession: PRJNA320927 ID: 320927

seawater metagenome

seawater metagenome Genome sequencing and assembly

In this study, we simulate the Deepwater Horizon oil spill in a laboratory system, with the indigenous seawater from the spill site and depth, Macondo oil, and dispersant (Corexit 9500) used during the spill. More...
AccessionPRJNA320927
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismseawater metagenome[Taxonomy ID: 1561972]
unclassified sequences; metagenomes; ecological metagenomes; seawater metagenome
PublicationsHu P et al., "Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.", Proc Natl Acad Sci U S A, 2017 Jul 11;114(28):7432-7437
SubmissionRegistration date: 31-May-2017
Lawrence Berkeley National Lab
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4255
WGS master31
Genomic DNA1
SRA Experiments3
Protein Sequences83365
Publications
PubMed1
PMC1
Other datasets
BioSample32
Assembly32
Assembly details:
Assembly levelNumber of Assemblies
1
27
4
32
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_002163025.1ScaffoldMABF00000000
SAMN05179579
Rs2_46_30_T18
GCA_002163135.1ScaffoldMAAN00000000
SAMN05179561
46_93_T64
GCA_002163065.1ScaffoldMAAG00000000
SAMN05179554
31_11_sub10_T18
GCA_002162985.1ScaffoldMAAD00000000
SAMN05179551
47_1433_sub80_T6
GCA_004563595.2Complete genomeSAMN05179569
28_42_T64
GCA_002163005.1ScaffoldMAAF00000000
SAMN05179553
38_32_sub10_T18
GCA_002162675.1ScaffoldMAAE00000000
SAMN05179552
39_35_sub15_T18
GCA_002162705.1ScaffoldMAAP00000000
SAMN05179563
44_32_T64
GCA_002162695.1ScaffoldMAAM00000000
SAMN05179560
46_120_T64
GCA_002163215.1ContigMAAK00000000
SAMN05179558
46_83_sub15_T18
GCA_002162685.1ScaffoldMAAQ00000000
SAMN05179564
33_180_T64
GCA_002162765.1ContigMAAR00000000
SAMN05179565
34_180_T64
GCA_002163245.1ScaffoldMAAL00000000
SAMN05179559
42_54_T18
GCA_002162955.1ScaffoldMABD00000000
SAMN05179577
45_16_T64
GCA_002162755.1ScaffoldMAAS00000000
SAMN05179566
50_400_T64
GCA_002162815.1ScaffoldMAAT00000000
SAMN05179567
53_120_T64
GCA_002162825.1ScaffoldMAAU00000000
SAMN05179568
54_18_T64
GCA_002163155.1ScaffoldMAAO00000000
SAMN05179562
36_234_T64
GCA_002163055.1ScaffoldMAAH00000000
SAMN05179555
42_23_T18
GCA_002163115.1ScaffoldMAAI00000000
SAMN05179556
41_12_T18
GCA_002163085.1ContigMAAJ00000000
SAMN05179557
42_25_T18
GCA_002163175.1ScaffoldMAAW00000000
SAMN05179570
42_8_T64
GCA_002162835.1ScaffoldMAAX00000000
SAMN05179571
35_9_T64
GCA_002162965.1ScaffoldMABE00000000
SAMN05179578
43_23_T18
GCA_002162875.1ContigMABA00000000
SAMN05179574
52_120_T64
GCA_002162795.1ScaffoldMAAY00000000
SAMN05179572
56_14_T64
GCA_002162885.1ScaffoldMAAZ00000000
SAMN05179573
59_46_T64
GCA_002162915.1ScaffoldMABB00000000
SAMN05179575
47_12_T64
GCA_002162925.1ScaffoldMABC00000000
SAMN05179576
42_200_T64
GCA_002163355.1ScaffoldMAAB00000000
SAMN04961124
-
GCA_002163335.1ScaffoldMAAC00000000
SAMN04961126
-
GCA_002163315.1ScaffoldMAAA00000000
SAMN04961123
-
SRA Data Details
ParameterValue
Data volume, Gbases44
Data volume, Mbytes30810

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