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Accession: PRJNA336336 ID: 336336

Glycine soja

RNA-Seq Study Reveals Genetic Responses of Diverse Wild Soybean Accessions to Increased Ozone Levels

See Genome Information for Glycine soja
Analysis of gene expression data from four genetically diverse wild soybean accessions helps reveal both sensitive and resistant responses of the plants to increased ozone levels. Results help characterize genetic response of wild soybean to ozone stress and could help provide information on genetic resources for creating ozone-tolerant soybean breeding lines. Overall design: 2 sensitive genotypes (PI 407179 and PI 424007) and 2 resistant genotypes (PI 424123 and PI 507656) were replicated in 4 complete block designs and subjected to either 75 parts per billion (ppb) ozone or a control of charcoal-filtered conditions (< 10 ppb ozone). Total RNA was isolated from the first three trifoliate of each plant and deep sequenced using Illumina HiSeq 2500.
AccessionPRJNA336336; GEO: GSE85146
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismGlycine soja[Taxonomy ID: 3848]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja; Glycine soja
PublicationsWaldeck N et al., "RNA-Seq study reveals genetic responses of diverse wild soybean accessions to increased ozone levels.", BMC Genomics, 2017 Jun 29;18(1):498
SubmissionRegistration date: 3-Aug-2016
Northwestern University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments95
Publications
PubMed1
PMC1
Other datasets
BioSample95
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes576
SRA Data Details
ParameterValue
Data volume, Gbases347
Data volume, Tbytes0.16

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