halite metagenome (ID 351262) - BioProject

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Accession: PRJNA351262 ID: 351262

halite metagenome

Halite metagenome Metagenomic assembly

Metagenomes from 26 salt crust samples taken along a fog gradient from the Salar Llamara in the hyperarid region of the Atacama Desert, Chile

Accession	PRJNA351262
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	halite metagenome[Taxonomy ID: 1319833] unclassified sequences; metagenomes; ecological metagenomes; halite metagenome
Publications	Finstad KM et al., "Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.", Front Microbiol, 2017;8:1435
Grants	"DISSERTATION RESEARCH: Living on the Edge: Biodiversity and Metabolic Potential of Microbial Communities in Salt Crusts of the Hyperarid Atacama Desert" (Grant ID 1406956, National Science Foundation)
Submission	Registration date: 19-Mar-2018 None
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	23981
WGS master	139
SRA Experiments	27
Protein Sequences	270349
Publications
PubMed	1
PMC	1
Other datasets
BioSample	166
Assembly	139

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

138
1
139

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_003021645.1	PXPG00000000	SAMN06020719	QS_5_72_10	Actinobacteria bacterium QS_5_72_10
GCA_003021615.1	PXPH00000000	SAMN06020720	QS_8_72_14	Actinobacteria bacterium QS_8_72_14
GCA_003023125.1	PXSY00000000	SAMN06020815	QH_10_64_19	Bacteroidetes bacterium QH_10_64_19
GCA_003023105.1	PXSZ00000000	SAMN06020816	QH_10_64_37	Bacteroidetes bacterium QH_10_64_37
GCA_003022705.1	PXSW00000000	SAMN06020813	QH_1_61_8	Bacteroidetes bacterium QH_1_61_8
GCA_003022655.1	PXSX00000000	SAMN06020814	QH_1_64_81	Bacteroidetes bacterium QH_1_64_81
GCA_003022645.1	PXTB00000000	SAMN06020818	QH_2_63_10	Bacteroidetes bacterium QH_2_63_10
GCA_003023145.1	PXTC00000000	SAMN06020819	QH_2_64_26	Bacteroidetes bacterium QH_2_64_26
GCA_003023085.1	PXTD00000000	SAMN06020820	QH_2_64_74	Bacteroidetes bacterium QH_2_64_74
GCA_003023385.1	PXTA00000000	SAMN06020817	QH_2_67_10	Bacteroidetes bacterium QH_2_67_10
GCA_003022615.1	PXTE00000000	SAMN06020821	QH_6_63_17	Bacteroidetes bacterium QH_6_63_17
GCA_003023065.1	PXTF00000000	SAMN06020822	QH_6_64_77	Bacteroidetes bacterium QH_6_64_77
GCA_003023365.1	PXTG00000000	SAMN06020823	QH_7_62_13	Bacteroidetes bacterium QH_7_62_13
GCA_003023045.1	PXTH00000000	SAMN06020824	QH_7_64_110	Bacteroidetes bacterium QH_7_64_110
GCA_003022975.1	PXTI00000000	SAMN06020825	QH_8_67_23	Bacteroidetes bacterium QH_8_67_23
GCA_003023345.1	PXTK00000000	SAMN06020827	QH_9_64_21	Bacteroidetes bacterium QH_9_64_21
GCA_003022605.1	PXTJ00000000	SAMN06020826	QH_9_67_14	Bacteroidetes bacterium QH_9_67_14
GCA_003023025.1	PXTM00000000	SAMN06020829	QS_1_63_11	Bacteroidetes bacterium QS_1_63_11
GCA_003023315.1	PXTL00000000	SAMN06020828	QS_1_65_9	Bacteroidetes bacterium QS_1_65_9
GCA_003022565.1	PXTN00000000	SAMN06020830	QS_3_64_15	Bacteroidetes bacterium QS_3_64_15
GCA_003023265.1	PXTO00000000	SAMN06020831	QS_4_64_154	Bacteroidetes bacterium QS_4_64_154
GCA_003022585.1	PXTP00000000	SAMN06020832	QS_7_67_15	Bacteroidetes bacterium QS_7_67_15
GCA_003022505.1	PXTQ00000000	SAMN06020833	QS_8_64_10	Bacteroidetes bacterium QS_8_64_10
GCA_003023245.1	PXTR00000000	SAMN06020834	QS_8_68_15	Bacteroidetes bacterium QS_8_68_15
GCA_003022485.1	PXTS00000000	SAMN06020835	QS_8_68_28	Bacteroidetes bacterium QS_8_68_28
GCA_003022535.1	PXTT00000000	SAMN06020836	QS_9_68_14	Bacteroidetes bacterium QS_9_68_14
GCA_003022515.1	PXTU00000000	SAMN06020837	SW_10_40_5	Bacteroidetes bacterium SW_10_40_5
GCA_003022985.1	PXTV00000000	SAMN06020838	SW_11_45_7	Bacteroidetes bacterium SW_11_45_7
GCA_003023295.1	PXTW00000000	SAMN06020839	SW_11_64_17	Bacteroidetes bacterium SW_11_64_17
GCA_003023275.1	PXTX00000000	SAMN06020840	SW_4_67_19	Bacteroidetes bacterium SW_4_67_19
GCA_003022965.1	PXTY00000000	SAMN06020841	SW_7_64_58	Bacteroidetes bacterium SW_7_64_58
GCA_003022465.1	PXTZ00000000	SAMN06020842	SW_8_64_56	Bacteroidetes bacterium SW_8_64_56
GCA_003022435.1	PXUA00000000	SAMN06020843	SW_9_63_38	Bacteroidetes bacterium SW_9_63_38
GCA_003022365.1	PXOU00000000	SAMN06020707	QS_5_54_17	Candidatus Saccharibacteria bacterium QS_5_54_17
GCA_003021965.1	PXOV00000000	SAMN06020708	QS_8_54_8	Candidatus Saccharibacteria bacterium QS_8_54_8
GCA_003022325.1	PXOW00000000	SAMN06020709	SW_7_54_9	Candidatus Saccharibacteria bacterium SW_7_54_9
GCA_003021585.1	PXPK00000000	SAMN06020723	QH_10_48_56	Cyanobacteria bacterium QH_10_48_56
GCA_003021605.1	PXPJ00000000	SAMN06020722	QH_1_48_107	Cyanobacteria bacterium QH_1_48_107
GCA_003021545.1	PXPL00000000	SAMN06020724	QH_2_48_84	Cyanobacteria bacterium QH_2_48_84
GCA_003021535.1	PXPM00000000	SAMN06020725	QH_3_48_40	Cyanobacteria bacterium QH_3_48_40
GCA_003022265.1	PXPN00000000	SAMN06020726	QH_6_48_35	Cyanobacteria bacterium QH_6_48_35
GCA_003022245.1	PXPO00000000	SAMN06020727	QH_7_48_89	Cyanobacteria bacterium QH_7_48_89
GCA_003021525.1	PXPP00000000	SAMN06020728	QH_8_48_120	Cyanobacteria bacterium QH_8_48_120
GCA_003021925.1	PXPQ00000000	SAMN06020729	QH_9_48_43	Cyanobacteria bacterium QH_9_48_43
GCA_003022225.1	PXPR00000000	SAMN06020730	QS_1_48_34	Cyanobacteria bacterium QS_1_48_34
GCA_003021885.1	PXPS00000000	SAMN06020731	QS_3_48_167	Cyanobacteria bacterium QS_3_48_167
GCA_003021505.1	PXPT00000000	SAMN06020732	QS_4_48_99	Cyanobacteria bacterium QS_4_48_99
GCA_003022205.1	PXPU00000000	SAMN06020733	QS_5_48_63	Cyanobacteria bacterium QS_5_48_63
GCA_003021485.1	PXPV00000000	SAMN06020734	QS_6_48_18	Cyanobacteria bacterium QS_6_48_18
GCA_003021855.1	PXPW00000000	SAMN06020735	QS_7_48_42	Cyanobacteria bacterium QS_7_48_42
GCA_003022145.1	PXQG00000000	SAMN06020745	QS_8_48_54	Cyanobacteria bacterium QS_8_48_54
GCA_003022125.1	PXQH00000000	SAMN06020746	QS_8_64_29	Cyanobacteria bacterium QS_8_64_29
GCA_003021465.1	PXPX00000000	SAMN06020736	QS_9_48_30	Cyanobacteria bacterium QS_9_48_30
GCA_003022175.1	PXPY00000000	SAMN06020737	SW_10_48_33	Cyanobacteria bacterium SW_10_48_33
GCA_003021435.1	PXPZ00000000	SAMN06020738	SW_11_48_12	Cyanobacteria bacterium SW_11_48_12
GCA_003021425.1	PXQA00000000	SAMN06020739	SW_12_48_29	Cyanobacteria bacterium SW_12_48_29
GCA_003022095.1	PXQI00000000	SAMN06020747	SW_4_48_29	Cyanobacteria bacterium SW_4_48_29
GCA_003021405.1	PXQB00000000	SAMN06020740	SW_5_48_44	Cyanobacteria bacterium SW_5_48_44
GCA_003021845.1	PXQC00000000	SAMN06020741	SW_6_48_11	Cyanobacteria bacterium SW_6_48_11
GCA_003022165.1	PXQD00000000	SAMN06020742	SW_7_48_12	Cyanobacteria bacterium SW_7_48_12
GCA_003021825.1	PXQE00000000	SAMN06020743	SW_8_48_13	Cyanobacteria bacterium SW_8_48_13
GCA_003021905.1	PXPI00000000	SAMN06020721	SW_9_44_58	Cyanobacteria bacterium SW_9_44_58
GCA_003021375.1	PXQF00000000	SAMN06020744	SW_9_47_5	Cyanobacteria bacterium SW_9_47_5
GCA_003022085.1	PXQK00000000	SAMN06020749	QH_10_65_19	Halobacteriales archaeon QH_10_65_19
GCA_003021335.1	PXQL00000000	SAMN06020750	QH_10_67_13	Halobacteriales archaeon QH_10_67_13
GCA_003021305.1	PXQN00000000	SAMN06020752	QH_10_67_22	Halobacteriales archaeon QH_10_67_22
GCA_003021325.1	PXQM00000000	SAMN06020751	QH_10_70_21	Halobacteriales archaeon QH_10_70_21
GCA_003021365.1	PXQJ00000000	SAMN06020748	QH_1_68_42	Halobacteriales archaeon QH_1_68_42
GCA_003021285.1	PXQO00000000	SAMN06020753	QH_2_65_14	Halobacteriales archaeon QH_2_65_14
GCA_003021245.1	PXQP00000000	SAMN06020754	QH_2_66_30	Halobacteriales archaeon QH_2_66_30
GCA_003021225.1	PXQQ00000000	SAMN06020755	QH_3_68_24	Halobacteriales archaeon QH_3_68_24
GCA_003021235.1	PXQR00000000	SAMN06020756	QH_6_64_20	Halobacteriales archaeon QH_6_64_20
GCA_003021205.1	PXQS00000000	SAMN06020757	QH_6_66_25	Halobacteriales archaeon QH_6_66_25
GCA_003021795.1	PXQT00000000	SAMN06020758	QH_6_68_27	Halobacteriales archaeon QH_6_68_27
GCA_003021785.1	PXQU00000000	SAMN06020759	QH_7_65_31	Halobacteriales archaeon QH_7_65_31
GCA_003021175.1	PXQV00000000	SAMN06020760	QH_7_66_36	Halobacteriales archaeon QH_7_66_36
GCA_003021165.1	PXQW00000000	SAMN06020761	QH_7_66_37	Halobacteriales archaeon QH_7_66_37
GCA_003021115.1	PXQX00000000	SAMN06020762	QH_7_68_42	Halobacteriales archaeon QH_7_68_42
GCA_003021745.1	PXQY00000000	SAMN06020763	QH_7_69_31	Halobacteriales archaeon QH_7_69_31
GCA_003021725.1	PXRA00000000	SAMN06020765	QH_8_64_26	Halobacteriales archaeon QH_8_64_26
GCA_003022045.1	PXRC00000000	SAMN06020767	QH_8_67_27	Halobacteriales archaeon QH_8_67_27
GCA_003021755.1	PXQZ00000000	SAMN06020764	QH_8_67_36	Halobacteriales archaeon QH_8_67_36
GCA_003022055.1	PXRB00000000	SAMN06020766	QH_8_68_33	Halobacteriales archaeon QH_8_68_33
GCA_003021145.1	PXRD00000000	SAMN06020768	QH_9_66_26	Halobacteriales archaeon QH_9_66_26
GCA_003022025.1	PXRF00000000	SAMN06020770	QS_1_67_19	Halobacteriales archaeon QS_1_67_19
GCA_003021105.1	PXRG00000000	SAMN06020771	QS_1_68_17	Halobacteriales archaeon QS_1_68_17
GCA_003021085.1	PXRE00000000	SAMN06020769	QS_1_68_20	Halobacteriales archaeon QS_1_68_20
GCA_003021055.1	PXRH00000000	SAMN06020772	QS_1_68_44	Halobacteriales archaeon QS_1_68_44
GCA_003021005.1	PXRI00000000	SAMN06020773	QS_1_69_70	Halobacteriales archaeon QS_1_69_70
GCA_003021705.1	PXRJ00000000	SAMN06020774	QS_3_64_16	Halobacteriales archaeon QS_3_64_16
GCA_003021685.1	PXRO00000000	SAMN06020779	QS_4_62_28	Halobacteriales archaeon QS_4_62_28
GCA_003021015.1	PXRK00000000	SAMN06020775	QS_4_66_20	Halobacteriales archaeon QS_4_66_20
GCA_003020965.1	PXRL00000000	SAMN06020776	QS_4_69_225	Halobacteriales archaeon QS_4_69_225
GCA_003021655.1	PXRP00000000	SAMN06020780	QS_4_69_31	Halobacteriales archaeon QS_4_69_31
GCA_003021045.1	PXRN00000000	SAMN06020778	QS_4_69_34	Halobacteriales archaeon QS_4_69_34
GCA_003020985.1	PXRM00000000	SAMN06020777	QS_4_70_19	Halobacteriales archaeon QS_4_70_19
GCA_003023785.1	PXRS00000000	SAMN06020783	QS_5_68_33	Halobacteriales archaeon QS_5_68_33
GCA_003022005.1	PXRQ00000000	SAMN06020781	QS_5_70_15	Halobacteriales archaeon QS_5_70_15
GCA_003021975.1	PXRR00000000	SAMN06020782	QS_5_70_17	Halobacteriales archaeon QS_5_70_17
GCA_003020925.1	PXRT00000000	SAMN06020784	QS_6_64_34	Halobacteriales archaeon QS_6_64_34
GCA_003020945.1	PXRU00000000	SAMN06020785	QS_6_71_20	Halobacteriales archaeon QS_6_71_20
GCA_003023525.1	PXRV00000000	SAMN06020786	QS_7_68_65	Halobacteriales archaeon QS_7_68_65
GCA_003023575.1	PXRW00000000	SAMN06020787	QS_7_69_60	Halobacteriales archaeon QS_7_69_60
GCA_003022925.1	PXRY00000000	SAMN06020789	QS_8_65_32	Halobacteriales archaeon QS_8_65_32
GCA_003023195.1	PXRX00000000	SAMN06020788	QS_8_69_26	Halobacteriales archaeon QS_8_69_26
GCA_003022945.1	PXRZ00000000	SAMN06020790	QS_8_69_73	Halobacteriales archaeon QS_8_69_73
GCA_003023165.1	PXSD00000000	SAMN06020794	QS_9_67_15	Halobacteriales archaeon QS_9_67_15
GCA_003023185.1	PXSB00000000	SAMN06020792	QS_9_67_17	Halobacteriales archaeon QS_9_67_17
GCA_003023565.1	PXSA00000000	SAMN06020791	QS_9_68_17	Halobacteriales archaeon QS_9_68_17
GCA_003022905.1	PXSE00000000	SAMN06020795	QS_9_68_42	Halobacteriales archaeon QS_9_68_42
GCA_003023535.1	PXSC00000000	SAMN06020793	QS_9_70_65	Halobacteriales archaeon QS_9_70_65
GCA_003022845.1	PXSF00000000	SAMN06020796	SW_10_66_29	Halobacteriales archaeon SW_10_66_29
GCA_003023485.1	PXSG00000000	SAMN06020797	SW_10_68_16	Halobacteriales archaeon SW_10_68_16
GCA_003023445.1	PXSJ00000000	SAMN06020800	SW_12_67_38	Halobacteriales archaeon SW_12_67_38
GCA_003023455.1	PXSI00000000	SAMN06020799	SW_12_69_24	Halobacteriales archaeon SW_12_69_24
GCA_003022885.1	PXSH00000000	SAMN06020798	SW_12_71_31	Halobacteriales archaeon SW_12_71_31
GCA_003022815.1	PXSL00000000	SAMN06020802	SW_5_68_122	Halobacteriales archaeon SW_5_68_122
GCA_003022865.1	PXSK00000000	SAMN06020801	SW_5_70_135	Halobacteriales archaeon SW_5_70_135
GCA_003023465.1	PXSM00000000	SAMN06020803	SW_6_65_15	Halobacteriales archaeon SW_6_65_15
GCA_003023215.1	PXSN00000000	SAMN06020804	SW_6_65_46	Halobacteriales archaeon SW_6_65_46
GCA_003022725.1	PXSQ00000000	SAMN06020807	SW_7_65_23	Halobacteriales archaeon SW_7_65_23
GCA_003022785.1	PXSO00000000	SAMN06020805	SW_7_68_16	Halobacteriales archaeon SW_7_68_16
GCA_003022805.1	PXSP00000000	SAMN06020806	SW_7_71_33	Halobacteriales archaeon SW_7_71_33
GCA_003022765.1	PXSR00000000	SAMN06020808	SW_8_65_20	Halobacteriales archaeon SW_8_65_20
GCA_003023415.1	PXSS00000000	SAMN06020809	SW_8_66_22	Halobacteriales archaeon SW_8_66_22
GCA_003023405.1	PXST00000000	SAMN06020810	SW_8_68_21	Halobacteriales archaeon SW_8_68_21
GCA_003022685.1	PXSV00000000	SAMN06020812	SW_9_67_24	Halobacteriales archaeon SW_9_67_24
GCA_003022745.1	PXSU00000000	SAMN06020811	SW_9_67_25	Halobacteriales archaeon SW_9_67_25
GCA_003009845.1	PXPB00000000	SAMN06020714	QH_8_44_6	Nanohaloarchaea archaeon QH_8_44_6
GCA_003009825.1	PXPC00000000	SAMN06020715	SW_10_44_10	Nanohaloarchaea archaeon SW_10_44_10
GCA_003009815.1	PXPD00000000	SAMN06020716	SW_4_43_9	Nanohaloarchaea archaeon SW_4_43_9
GCA_003009795.1	PXPE00000000	SAMN06020717	SW_7_43_1	Nanohaloarchaea archaeon SW_7_43_1
GCA_003009775.1	PXPF00000000	SAMN06020718	SW_7_46_7	Nanohaloarchaea archaeon SW_7_46_7
GCA_003022345.1	PXOX00000000	SAMN06020710	QH_9_35_7	Parcubacteria group bacterium QH_9_35_7
GCA_003022305.1	PXOZ00000000	SAMN06020712	SW_4_46_8	Parcubacteria group bacterium SW_4_46_8
GCA_003021915.1	PXOY00000000	SAMN06020711	SW_4_49_11	Parcubacteria group bacterium SW_4_49_11
GCA_003022255.1	PXPA00000000	SAMN06020713	SW_6_46_9	Parcubacteria group bacterium SW_6_46_9
GCA_003022425.1	PXUC00000000	SAMN06020845	SW_6_67_9	Proteobacteria bacterium SW_6_67_9
GCA_003009755.1	PXUB00000000	SAMN06020844	SW_10_69_26	Thermoplasmatales archaeon SW_10_69_26

SRA Data Details

Parameter	Value
Data volume, Gbases	86
Data volume, Mbytes	68962

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halite metagenome

Halite metagenome Metagenomic assembly

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