human gut metagenome (ID 362284) - BioProject

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Accession: PRJNA362284 ID: 362284

human gut metagenome

human gut metagenome PacBio Raw sequence reads

Uncover the diversity of “metamobilome”, a set of complete mobile genetic elements, and the “metamethylome”, a set of DNA methylation motifs and their methylation levels, in microbiomes as well as the diversity of metagenome

Accession	PRJNA362284
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Suzuki Y et al., "Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut.", Microbiome, 2019 Aug 27;7(1):119
Submission	Registration date: 23-Sep-2019 The University of Tokyo
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	184
WGS master	101
Genomic DNA	83
SRA Experiments	35
Publications
PubMed	1
PMC	1
Other datasets
BioSample	220
Assembly	113

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

101
101

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_008679575.1	NAMW00000000	SAMN06546887	LMAG:83	Acidaminococcus intestini
GCA_008679845.1	NAMJ00000000	SAMN06546874	LMAG:70	Agathobacter rectalis
GCA_008679515.1	NAMZ00000000	SAMN06546890	LMAG:86	Agathobacter rectalis
GCA_008680415.1	NALF00000000	SAMN06546844	LMAG:40	Agathobacter rectalis
GCA_008680385.1	NALI00000000	SAMN06546847	LMAG:43	Agathobacter rectalis
GCA_008680205.1	NALS00000000	SAMN06546857	LMAG:53	Agathobacter rectalis
GCA_008679275.1	NANM00000000	SAMN06546903	LMAG:99	Anaerostipes hadrus
GCA_008680515.1	NALC00000000	SAMN06546841	LMAG:37	Anaerostipes hadrus
GCA_008680995.1	NAKC00000000	SAMN06546815	LMAG:11	Anaerostipes hadrus
GCA_008681165.1	NAJV00000000	SAMN06546808	LMAG:4	Bacillota bacterium
GCA_008681155.1	NAJW00000000	SAMN06546809	LMAG:5	Bacillota bacterium
GCA_008681125.1	NAJY00000000	SAMN06546811	LMAG:7	Bacillota bacterium
GCA_008681115.1	NAJX00000000	SAMN06546810	LMAG:6	Bacillota bacterium
GCA_008680855.1	NAKK00000000	SAMN06546823	LMAG:19	Bacillota bacterium
GCA_008679235.1	NANN00000000	SAMN06546904	LMAG:100	Bacillota bacterium
GCA_008680325.1	NALL00000000	SAMN06546850	LMAG:46	Bacillota bacterium
GCA_008680295.1	NALN00000000	SAMN06546852	LMAG:48	Bacillota bacterium
GCA_008679615.1	NAMU00000000	SAMN06546885	LMAG:81	Bacillota bacterium
GCA_008679345.1	NANI00000000	SAMN06546899	LMAG:95	Bacillota bacterium
GCA_008679325.1	NANJ00000000	SAMN06546900	LMAG:96	Bacillota bacterium
GCA_008679835.1	NAMK00000000	SAMN06546875	LMAG:71	Bacillota bacterium
GCA_008679565.1	NAMX00000000	SAMN06546888	LMAG:84	Bacillota bacterium
GCA_008679555.1	NAMY00000000	SAMN06546889	LMAG:85	Bacillota bacterium
GCA_008679815.1	NAML00000000	SAMN06546876	LMAG:72	Bacteroides ovatus
GCA_008679735.1	NAMP00000000	SAMN06546880	LMAG:76	Bacteroides uniformis
GCA_008680795.1	NAKN00000000	SAMN06546826	LMAG:22	Bacteroides uniformis
GCA_008679245.1	NANO00000000	SAMN06546905	LMAG:101	Bifidobacterium adolescentis
GCA_008680775.1	NAKO00000000	SAMN06546827	LMAG:23	Bifidobacterium adolescentis
GCA_008681015.1	NAKD00000000	SAMN06546816	LMAG:12	Bifidobacterium bifidum
GCA_008679685.1	NAMS00000000	SAMN06546883	LMAG:79	Bifidobacterium bifidum
GCA_008679935.1	NAMF00000000	SAMN06546870	LMAG:66	Bifidobacterium bifidum
GCA_008679415.1	NANF00000000	SAMN06546896	LMAG:92	Bifidobacterium longum
GCA_008680575.1	NAKZ00000000	SAMN06546838	LMAG:34	Bifidobacterium longum
GCA_008680605.1	NAKX00000000	SAMN06546836	LMAG:32	Bifidobacterium pseudocatenulatum
GCA_008679875.1	NAMH00000000	SAMN06546872	LMAG:68	Bifidobacterium pseudocatenulatum
GCA_008680165.1	NALU00000000	SAMN06546859	LMAG:55	Bifidobacterium pseudocatenulatum
GCA_008680335.1	NALK00000000	SAMN06546849	LMAG:45	Blautia obeum
GCA_008681005.1	NAKF00000000	SAMN06546818	LMAG:14	Blautia sp. LMAG:14
GCA_008680665.1	NAKV00000000	SAMN06546834	LMAG:30	Blautia sp. LMAG:30
GCA_008680535.1	NALB00000000	SAMN06546840	LMAG:36	Blautia sp. LMAG:36
GCA_008679995.1	NAMB00000000	SAMN06546866	LMAG:62	Blautia sp. LMAG:62
GCA_008679895.1	NAMI00000000	SAMN06546873	LMAG:69	Blautia sp. LMAG:69
GCA_008679745.1	NAMO00000000	SAMN06546879	LMAG:75	Blautia sp. LMAG:75
GCA_008679715.1	NAMQ00000000	SAMN06546881	LMAG:77	Blautia sp. LMAG:77
GCA_008679485.1	NANC00000000	SAMN06546893	LMAG:89	Blautia sp. LMAG:89
GCA_008679525.1	NANA00000000	SAMN06546891	LMAG:87	Blautia wexlerae
GCA_008680935.1	NAKH00000000	SAMN06546820	LMAG:16	Blautia wexlerae
GCA_008679665.1	NAMR00000000	SAMN06546882	LMAG:78	Clostridiales bacterium LMAG:78
GCA_008680005.1	NAMC00000000	SAMN06546867	LMAG:63	Clostridium sp. LMAG:63
GCA_008679405.1	NANE00000000	SAMN06546895	LMAG:91	Collinsella aerofaciens
GCA_008680965.1	NAKE00000000	SAMN06546817	LMAG:13	Collinsella aerofaciens
GCA_008680765.1	NAKP00000000	SAMN06546828	LMAG:24	Collinsella aerofaciens
GCA_008680655.1	NAKT00000000	SAMN06546832	LMAG:28	Dorea longicatena
GCA_008680955.1	NAKG00000000	SAMN06546819	LMAG:15	Dorea longicatena
GCA_008680835.1	NAKM00000000	SAMN06546825	LMAG:21	Eubacterium ramulus
GCA_008680595.1	NAKY00000000	SAMN06546837	LMAG:33	Eubacterium sp. LMAG:33
GCA_008680545.1	NALA00000000	SAMN06546839	LMAG:35	Eubacterium sp. LMAG:35
GCA_008680475.1	NALD00000000	SAMN06546842	LMAG:38	Eubacterium sp. LMAG:38
GCA_008680315.1	NALM00000000	SAMN06546851	LMAG:47	Eubacterium sp. LMAG:47
GCA_008680265.1	NALP00000000	SAMN06546854	LMAG:50	Eubacterium sp. LMAG:50
GCA_008680115.1	NALW00000000	SAMN06546861	LMAG:57	Eubacterium sp. LMAG:57
GCA_008680105.1	NALX00000000	SAMN06546862	LMAG:58	Eubacterium sp. LMAG:58
GCA_008680055.1	NAMA00000000	SAMN06546865	LMAG:61	Eubacterium sp. LMAG:61
GCA_008679925.1	NAMG00000000	SAMN06546871	LMAG:67	Eubacterium sp. LMAG:67
GCA_008680095.1	NALV00000000	SAMN06546860	LMAG:56	Faecalibacterium prausnitzii
GCA_008680155.1	NALT00000000	SAMN06546858	LMAG:54	Faecalibacterium prausnitzii
GCA_008681055.1	NAKB00000000	SAMN06546814	LMAG:10	Faecalibacterium prausnitzii
GCA_008680375.1	NALJ00000000	SAMN06546848	LMAG:44	Faecalibacterium sp. LMAG:44
GCA_008680065.1	NALY00000000	SAMN06546863	LMAG:59	Klebsiella pneumoniae
GCA_008679375.1	NANG00000000	SAMN06546897	LMAG:93	Lachnospiraceae bacterium
GCA_008680895.1	NAKI00000000	SAMN06546821	LMAG:17	Lachnospiraceae bacterium
GCA_008680735.1	NAKR00000000	SAMN06546830	LMAG:26	Mediterraneibacter faecis
GCA_008679915.1	NAME00000000	SAMN06546869	LMAG:65	Mediterraneibacter faecis
GCA_008658335.1	NAJS00000000	SAMN06546805	LMAG:1	Mediterraneibacter faecis
GCA_008679315.1	NANK00000000	SAMN06546901	LMAG:97	Mediterraneibacter gnavus
GCA_008681065.1	NAKA00000000	SAMN06546813	LMAG:9	Mediterraneibacter gnavus
GCA_008680755.1	NAKQ00000000	SAMN06546829	LMAG:25	Megamonas rupellensis
GCA_008679285.1	NANL00000000	SAMN06546902	LMAG:98	Parabacteroides distasonis
GCA_008679655.1	NAMT00000000	SAMN06546884	LMAG:80	Parabacteroides distasonis
GCA_008680675.1	NAKS00000000	SAMN06546831	LMAG:27	Parabacteroides distasonis
GCA_008679785.1	NAMM00000000	SAMN06546877	LMAG:73	Parabacteroides johnsonii
GCA_008679635.1	NAMV00000000	SAMN06546886	LMAG:82	Parabacteroides merdae
GCA_008680245.1	NALO00000000	SAMN06546853	LMAG:49	Phascolarctobacterium succinatutens
GCA_008681195.1	NAJU00000000	SAMN06546807	LMAG:3	Phocaeicola coprocola
GCA_008681075.1	NAJZ00000000	SAMN06546812	LMAG:8	Phocaeicola dorei
GCA_008680425.1	NALH00000000	SAMN06546846	LMAG:42	Phocaeicola dorei
GCA_008679475.1	NANB00000000	SAMN06546892	LMAG:88	Phocaeicola dorei
GCA_008680865.1	NAKJ00000000	SAMN06546822	LMAG:18	Phocaeicola plebeius
GCA_008680875.1	NAKL00000000	SAMN06546824	LMAG:20	Phocaeicola vulgatus
GCA_008679395.1	NANH00000000	SAMN06546898	LMAG:94	Phocaeicola vulgatus
GCA_008680195.1	NALR00000000	SAMN06546856	LMAG:52	Phocaeicola vulgatus
GCA_008680225.1	NALQ00000000	SAMN06546855	LMAG:51	Prevotella sp. LMAG:51
GCA_008680445.1	NALG00000000	SAMN06546845	LMAG:41	Ruminococcus bromii
GCA_008679975.1	NAMD00000000	SAMN06546868	LMAG:64	Ruminococcus bromii
GCA_008680015.1	NALZ00000000	SAMN06546864	LMAG:60	Segatella copri
GCA_008680485.1	NALE00000000	SAMN06546843	LMAG:39	Streptococcus sp. LMAG:39
GCA_008679765.1	NAMN00000000	SAMN06546878	LMAG:74	Thomasclavelia ramosa
GCA_008658315.1	NAJT00000000	SAMN06546806	LMAG:2	Veillonella sp. LMAG:2
GCA_008680695.1	NAKU00000000	SAMN06546833	LMAG:29	Veillonella sp. LMAG:29
GCA_008679445.1	NAND00000000	SAMN06546894	LMAG:90	Veillonella sp. LMAG:90
GCA_008680635.1	NAKW00000000	SAMN06546835	LMAG:31	[Clostridium] nexile

SRA Data Details

Parameter	Value
Data volume, Gbases	351
Data volume, Tbytes	1.26

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human gut metagenome

human gut metagenome PacBio Raw sequence reads

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