aquifer metagenome (ID 387583) - BioProject

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Accession: PRJNA387583 ID: 387583

aquifer metagenome

Microbial community analysis from aquifers in three Ohio counties

Arsenic contamination is an increasing problem throughout Ohio. In order to address the microbial contribution to arsenic mobilization, both shotgun metagenomic and 16S rRNA gene amplicon data were collected from four separate groundwater wells in three different counties throughout central and southern Ohio to assess microbial community dynamics.

Accession	PRJNA387583
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	aquifer metagenome[Taxonomy ID: 1704045] unclassified sequences; metagenomes; ecological metagenomes; aquifer metagenome
Grants	"Microbial drivers of iron and arsenic mobilization in Ohio aquifers" (Grant ID 7171, Ohio Water Development Authority)
Submission	Registration date: 24-Jul-2019 The Ohio State University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3729
WGS master	71
SRA Experiments	1
Protein Sequences	56742
Other datasets
BioSample	81
Assembly	71

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

25
46
71

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_007376605.1	VMGN00000000	SAMN07255548	Athens1014_28	Candidatus Berkelbacteria bacterium Athens1014_28
GCA_007375885.1	VMFD00000000	SAMN07255584	Gr01-1014_85	Candidatus Berkelbacteria bacterium Gr01-1014_85
GCA_007376565.1	VMGL00000000	SAMN07255550	Licking1014_2	Candidatus Berkelbacteria bacterium Licking1014_2
GCA_007376535.1	VMGK00000000	SAMN07255551	Licking1014_7	Candidatus Berkelbacteria bacterium Licking1014_7
GCA_007376495.1	VMGI00000000	SAMN07255553	Licking1014_85	Candidatus Berkelbacteria bacterium Licking1014_85
GCA_007376505.1	VMGH00000000	SAMN07255554	Licking1014_96	Candidatus Berkelbacteria bacterium Licking1014_96
GCA_007375915.1	VMFF00000000	SAMN07255582	Gr01-1014_77	Candidatus Doudnabacteria bacterium Gr01-1014_77
GCA_007376205.1	VMFU00000000	SAMN07255567	Gr01-1014_25	Candidatus Peregrinibacteria bacterium Gr01-1014_25
GCA_007375735.1	VMEW00000000	SAMN07255591	Greene0416_19	Candidatus Peregrinibacteria bacterium Greene0416_19
GCA_007375695.1	VMET00000000	SAMN07255594	Greene0416_62	Candidatus Peregrinibacteria bacterium Greene0416_62
GCA_007376635.1	VMGQ00000000	SAMN07255545	Greene1014_49	Candidatus Peregrinibacteria bacterium Greene1014_49
GCA_007376345.1	VMGA00000000	SAMN07255561	Gr01-1014_16	Microgenomates group bacterium Gr01-1014_16
GCA_007376395.1	VMGE00000000	SAMN07255557	Gr01-1014_5	Microgenomates group bacterium Gr01-1014_5
GCA_007376405.1	VMGD00000000	SAMN07255558	Gr01-1014_7	Microgenomates group bacterium Gr01-1014_7
GCA_007375895.1	VMFE00000000	SAMN07255583	Gr01-1014_80	Microgenomates group bacterium Gr01-1014_80
GCA_007375835.1	VMFB00000000	SAMN07255586	Gr01-1014_93	Microgenomates group bacterium Gr01-1014_93
GCA_007375625.1	VMEQ00000000	SAMN07255597	LiPW_16	Microgenomates group bacterium LiPW_16
GCA_007375525.1	VMEO00000000	SAMN07255599	LiPW_31	Microgenomates group bacterium LiPW_31
GCA_007375785.1	VMEY00000000	SAMN07255589	Athens0416_74	Parcubacteria group bacterium Athens0416_74
GCA_007378955.1	VMGY00000000	SAMN07255537	Athens0714_12	Parcubacteria group bacterium Athens0714_12
GCA_007376805.1	VMGX00000000	SAMN07255538	Athens0714_16	Parcubacteria group bacterium Athens0714_16
GCA_007376735.1	VMGW00000000	SAMN07255539	Athens0714_24	Parcubacteria group bacterium Athens0714_24
GCA_007376775.1	VMGV00000000	SAMN07255540	Athens0714_25	Parcubacteria group bacterium Athens0714_25
GCA_007376745.1	VMGU00000000	SAMN07255541	Athens0714_26	Parcubacteria group bacterium Athens0714_26
GCA_007376655.1	VMGP00000000	SAMN07255546	Athens1014_10	Parcubacteria group bacterium Athens1014_10
GCA_007376615.1	VMGO00000000	SAMN07255547	Athens1014_26	Parcubacteria group bacterium Athens1014_26
GCA_007375805.1	VMFA00000000	SAMN07255587	Gr01-1014_106	Parcubacteria group bacterium Gr01-1014_106
GCA_007375795.1	VMEZ00000000	SAMN07255588	Gr01-1014_107	Parcubacteria group bacterium Gr01-1014_107
GCA_007376295.1	VMGB00000000	SAMN07255560	Gr01-1014_13	Parcubacteria group bacterium Gr01-1014_13
GCA_007376285.1	VMFZ00000000	SAMN07255562	Gr01-1014_17	Parcubacteria group bacterium Gr01-1014_17
GCA_007376335.1	VMFY00000000	SAMN07255563	Gr01-1014_18	Parcubacteria group bacterium Gr01-1014_18
GCA_007376325.1	VMFX00000000	SAMN07255564	Gr01-1014_19	Parcubacteria group bacterium Gr01-1014_19
GCA_007376425.1	VMGG00000000	SAMN07255555	Gr01-1014_2	Parcubacteria group bacterium Gr01-1014_2
GCA_007376265.1	VMFW00000000	SAMN07255565	Gr01-1014_20	Parcubacteria group bacterium Gr01-1014_20
GCA_007376215.1	VMFV00000000	SAMN07255566	Gr01-1014_24	Parcubacteria group bacterium Gr01-1014_24
GCA_007376195.1	VMFT00000000	SAMN07255568	Gr01-1014_29	Parcubacteria group bacterium Gr01-1014_29
GCA_007376445.1	VMGF00000000	SAMN07255556	Gr01-1014_3	Parcubacteria group bacterium Gr01-1014_3
GCA_007376185.1	VMFS00000000	SAMN07255569	Gr01-1014_30	Parcubacteria group bacterium Gr01-1014_30
GCA_007376135.1	VMFR00000000	SAMN07255570	Gr01-1014_31	Parcubacteria group bacterium Gr01-1014_31
GCA_007376125.1	VMFQ00000000	SAMN07255571	Gr01-1014_33	Parcubacteria group bacterium Gr01-1014_33
GCA_007376145.1	VMFP00000000	SAMN07255572	Gr01-1014_38	Parcubacteria group bacterium Gr01-1014_38
GCA_007376105.1	VMFO00000000	SAMN07255573	Gr01-1014_44	Parcubacteria group bacterium Gr01-1014_44
GCA_007376085.1	VMFN00000000	SAMN07255574	Gr01-1014_46	Parcubacteria group bacterium Gr01-1014_46
GCA_007376035.1	VMFM00000000	SAMN07255575	Gr01-1014_48	Parcubacteria group bacterium Gr01-1014_48
GCA_007376045.1	VMFL00000000	SAMN07255576	Gr01-1014_49	Parcubacteria group bacterium Gr01-1014_49
GCA_007375995.1	VMFK00000000	SAMN07255577	Gr01-1014_56	Parcubacteria group bacterium Gr01-1014_56
GCA_007376025.1	VMFJ00000000	SAMN07255578	Gr01-1014_66	Parcubacteria group bacterium Gr01-1014_66
GCA_007375985.1	VMFI00000000	SAMN07255579	Gr01-1014_70	Parcubacteria group bacterium Gr01-1014_70
GCA_007375925.1	VMFH00000000	SAMN07255580	Gr01-1014_72	Parcubacteria group bacterium Gr01-1014_72
GCA_007375945.1	VMFG00000000	SAMN07255581	Gr01-1014_73	Parcubacteria group bacterium Gr01-1014_73
GCA_007376385.1	VMGC00000000	SAMN07255559	Gr01-1014_8	Parcubacteria group bacterium Gr01-1014_8
GCA_007375845.1	VMFC00000000	SAMN07255585	Gr01-1014_91	Parcubacteria group bacterium Gr01-1014_91
GCA_007375765.1	VMEX00000000	SAMN07255590	Greene0416_14	Parcubacteria group bacterium Greene0416_14
GCA_007375725.1	VMEV00000000	SAMN07255592	Greene0416_36	Parcubacteria group bacterium Greene0416_36
GCA_007375675.1	VMEU00000000	SAMN07255593	Greene0416_39	Parcubacteria group bacterium Greene0416_39
GCA_007375655.1	VMES00000000	SAMN07255595	Greene0416_79	Parcubacteria group bacterium Greene0416_79
GCA_007379055.1	VMHD00000000	SAMN07255532	Greene0714_2	Parcubacteria group bacterium Greene0714_2
GCA_007378945.1	VMHA00000000	SAMN07255535	Greene0714_21	Parcubacteria group bacterium Greene0714_21
GCA_007378975.1	VMGZ00000000	SAMN07255536	Greene0714_36	Parcubacteria group bacterium Greene0714_36
GCA_007379045.1	VMHC00000000	SAMN07255533	Greene0714_4	Parcubacteria group bacterium Greene0714_4
GCA_007378985.1	VMHB00000000	SAMN07255534	Greene0714_7	Parcubacteria group bacterium Greene0714_7
GCA_007376725.1	VMGT00000000	SAMN07255542	Greene1014_15	Parcubacteria group bacterium Greene1014_15
GCA_007376705.1	VMGS00000000	SAMN07255543	Greene1014_20	Parcubacteria group bacterium Greene1014_20
GCA_007376645.1	VMGR00000000	SAMN07255544	Greene1014_47	Parcubacteria group bacterium Greene1014_47
GCA_007375645.1	VMER00000000	SAMN07255596	LiPW_15	Parcubacteria group bacterium LiPW_15
GCA_007375595.1	VMEP00000000	SAMN07255598	LiPW_30	Parcubacteria group bacterium LiPW_30
GCA_007375545.1	VMEN00000000	SAMN07255600	LiPW_39	Parcubacteria group bacterium LiPW_39
GCA_007375535.1	VMEM00000000	SAMN07255601	LiPW_41	Parcubacteria group bacterium LiPW_41
GCA_007375565.1	VMEL00000000	SAMN07255602	LiPW_72	Parcubacteria group bacterium LiPW_72
GCA_007376575.1	VMGM00000000	SAMN07255549	Licking1014_1	Parcubacteria group bacterium Licking1014_1
GCA_007376485.1	VMGJ00000000	SAMN07255552	Licking1014_17	Parcubacteria group bacterium Licking1014_17

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	408

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aquifer metagenome

Microbial community analysis from aquifers in three Ohio counties

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