Bacteria (ID 261239) - BioProject

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Accession: PRJNA261239 ID: 261239

Bacteria

Gram-negative Pathogen Genome Sequencing

This project is a collaboration between Miami University, Walter Reed Army Institute of Research, San Antonio Military Medical Center, University of Chicago Department of Pathology, in association with the Center for Bioinformatics and Functional Genomics at Miami University, with the goal of sequencing bacterial wound isolates. More...

Accession	PRJNA261239
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 3) Less...	Arivett BA et al., "Draft Genome of the Multidrug-Resistant Acinetobacter baumannii Strain A155 Clinical Isolate.", Genome Announc, 2015 Mar 26;3(2) More... Arivett BA et al., "Draft Genome of the Multidrug-Resistant Acinetobacter baumannii Strain A155 Clinical Isolate.", Genome Announc, 2015 Mar 26;3(2) Arivett BA et al., "Draft Genome Sequences of Klebsiella pneumoniae Clinical Type Strain ATCC 13883 and Three Multidrug-Resistant Clinical Isolates.", Genome Announc, 2015 Jan 15;3(1) Published online, DOI: title: Two cases of necrotizing fasciitis due to Acinetobacter baumannii; journal: Journal of clinical microbiology; year: 2009; volume: 47; issue: 1; pages_from: 258; pages_to: 263; multiple_authors: True; author: Angella Charnot-Katsikas Less...
Grants	"Gram-negative bacterial wound infections" (Grant ID W81XWH-12-2-0035, Department of Defense)
Submission	Registration date: 1-Dec-2014 Miami University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3115
WGS master	45
SRA Experiments	2
Protein Sequences	191872
Publications
PubMed	2
PMC	2
Other datasets
BioSample	46
Assembly	45

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

42
3
45

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001612455.1	LREO00000000	SAMN03078682	AB5197	Acinetobacter baumannii
GCA_001612435.1	LREP00000000	SAMN03078683	AB5674	Acinetobacter baumannii
GCA_001612415.1	LREM00000000	SAMN03078680	AB4991	Acinetobacter baumannii
GCA_001612395.1	LREN00000000	SAMN03078681	AB5001	Acinetobacter baumannii
GCA_001612365.1	LREK00000000	SAMN03078678	AB4932	Acinetobacter baumannii
GCA_001612355.1	LREL00000000	SAMN03078679	AB4957	Acinetobacter baumannii
GCA_001612335.1	LREJ00000000	SAMN03078677	AB4878	Acinetobacter baumannii
GCA_001612315.1	LREI00000000	SAMN03078676	AB4795	Acinetobacter baumannii
GCA_001612285.1	LREH00000000	SAMN03078675	AB4498	Acinetobacter baumannii
GCA_001612275.1	LREG00000000	SAMN03078674	AB4490	Acinetobacter baumannii
GCA_001612255.1	LREE00000000	SAMN03078672	AB4448	Acinetobacter baumannii
GCA_001612235.1	LRED00000000	SAMN03078670	AB4052	Acinetobacter baumannii
GCA_001612215.1	LREF00000000	SAMN03078673	AB4456	Acinetobacter baumannii
GCA_001612185.1	LREA00000000	SAMN03078667	AB4025	Acinetobacter baumannii
GCA_001612175.1	LREC00000000	SAMN03078669	AB4027	Acinetobacter baumannii
GCA_001612155.1	LREB00000000	SAMN03078668	AB4026	Acinetobacter baumannii
GCA_001612115.1	LRDZ00000000	SAMN03078666	AB3927	Acinetobacter baumannii
GCA_001612105.1	LRDY00000000	SAMN03078665	AB3806	Acinetobacter baumannii
GCA_001612095.1	LRDW00000000	SAMN03078663	AB3638	Acinetobacter baumannii
GCA_001612075.1	LRDX00000000	SAMN03078664	AB3785	Acinetobacter baumannii
GCA_001612025.1	LRDS00000000	SAMN03078659	AB967	Acinetobacter baumannii
GCA_001612015.1	LRDV00000000	SAMN03078662	AB3560	Acinetobacter baumannii
GCA_001612005.1	LRDU00000000	SAMN03078661	AB3340	Acinetobacter baumannii
GCA_001611995.1	LRDT00000000	SAMN03078660	AB2828	Acinetobacter baumannii
GCA_000836625.1	JXSV00000000	SAMN03276491	A155	Acinetobacter baumannii
GCA_009910215.1	WKJS00000000	SAMN03278707	NFAb2	Acinetobacter baumannii
GCA_009910195.1	WKJR00000000	SAMN03278708	NFAb1	Acinetobacter baumannii
GCA_001601655.1	LOJL00000000	SAMN03076173	105454	Escherichia coli
GCA_001601605.1	LOJM00000000	SAMN03076174	105547	Escherichia coli
GCA_001562385.1	LORC00000000	SAMN03076178	105438	Escherichia coli
GCA_001562375.1	LORE00000000	SAMN03076176	108191	Escherichia coli
GCA_001562345.1	LORD00000000	SAMN03076175	109497	Escherichia coli
GCA_001562335.1	LORF00000000	SAMN03076177	105433	Escherichia coli
GCA_001647475.1	LQQD00000000	SAMN03076172	101731	Klebsiella pneumoniae
GCA_001647465.1	LQQE00000000	SAMN03076170	105371	Klebsiella pneumoniae
GCA_001647455.1	LQQF00000000	SAMN03076168	101436	Klebsiella pneumoniae
GCA_000788015.1	JSZI00000000	SAMN03076179	ATCC 13883	Klebsiella pneumoniae subsp. pneumoniae
GCA_000788025.1	JSZL00000000	SAMN03078684	4640	Klebsiella pneumoniae
GCA_000787995.1	JSZK00000000	SAMN03076171	101488	Klebsiella pneumoniae
GCA_000788005.1	JSZJ00000000	SAMN03076169	101712	Klebsiella pneumoniae
GCA_001601665.1	LOHJ00000000	SAMN03076166	105857	Pseudomonas aeruginosa
GCA_001601595.1	LOHK00000000	SAMN03076167	105738	Pseudomonas aeruginosa
GCA_001601585.1	LOHI00000000	SAMN03069734	105880	Pseudomonas aeruginosa
GCA_001601745.1	LOHH00000000	SAMN03076165	105819	Pseudomonas aeruginosa
GCA_001560865.1	LODH00000000	SAMN03076164	105777	Pseudomonas aeruginosa

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	315

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Gram-negative Pathogen Genome Sequencing

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