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Accession: PRJNA297582 ID: 297582

groundwater metagenome

Microbial carbon sequestration in a subsurface aquifer contaminated by geologic CO2

Sequestration of CO2 in the subsurface is a strategy under serious consideration to limit accumulation of anthropogenic CO2 in the atmosphere. More...
AccessionPRJNA297582
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications
  • Probst AJ et al., "Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO(2) concentrations.", Environ Microbiol, 2017 Feb;19(2):459-474
  • Burstein D et al., "Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.", Nat Commun, 2016 Feb 3;7:10613
SubmissionRegistration date: 9-Nov-2016
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)19206
WGS master151
Genomic DNA1
SRA Experiments8
Protein Sequences222394
Publications
PubMed2
PMC1
Other datasets
BioSample160
Assembly151
Assembly details:
Assembly levelNumber of Assemblies
137
14
151
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001871905.1ScaffoldMNUG00000000SAMN04328168
CG1_02_46_17
GCA_001871895.1ScaffoldMNUH00000000SAMN04328177
CG1_02_58_13
GCA_001872455.1ContigMNXJ00000000SAMN04328257
CG2_30_57_67
GCA_001872165.1ScaffoldMNXK00000000SAMN04328258
CG2_30_58_95
GCA_001871755.1ScaffoldMNXL00000000SAMN04328259
CG2_30_64_16
GCA_001872605.1ScaffoldMNXM00000000SAMN04328248
CG2_30_59_28
GCA_001871675.1ScaffoldMNXN00000000SAMN04328252
CG2_30_66_41
GCA_001872995.1ScaffoldMNXO00000000SAMN04328253
CG2_30_32_10
GCA_001872625.1ScaffoldMNXP00000000SAMN04328254
CG2_30_33_31
GCA_001871385.1ScaffoldMNXT00000000SAMN04328309
CG2_30_59_46
GCA_001872285.1ScaffoldMNXU00000000SAMN04328305
CG2_30_68_42
GCA_001871575.1ScaffoldMNXV00000000SAMN04328255
CG2_30_36_11
GCA_001873985.1ScaffoldMNUF00000000SAMN04328206
CG1_02_38_14
GCA_001873845.1ScaffoldMNZY00000000SAMN04328315
CG2_30_32_3053
GCA_001871795.1ScaffoldMNXI00000000SAMN04328288
CG2_30_50_142
GCA_001873345.1ScaffoldMNYY00000000SAMN04328298
CG2_30_33_13
GCA_001872035.1ScaffoldMNUI00000000SAMN04328215
CG1_02_47_37
GCA_001871835.1ScaffoldMNXQ00000000SAMN04328274
CG2_30_44_31
GCA_001872015.1ScaffoldMNUJ00000000SAMN04328196
CG1_02_42_45
GCA_001872695.1ScaffoldMNXR00000000SAMN04328270
CG2_30_39_44
GCA_001872655.1ScaffoldMNXS00000000SAMN04328297
CG2_30_43_20
GCA_001872005.1ScaffoldMNUK00000000SAMN04328198
CG1_02_44_10
GCA_001871015.1ScaffoldMNUO00000000SAMN04328222
CG1_02_38_46
GCA_001871075.1ScaffoldMNUP00000000SAMN04328223
CG1_02_49_89
GCA_001873945.1ScaffoldMNYI00000000SAMN04328251
CG2_30_40_21
GCA_001871165.1ScaffoldMNUT00000000SAMN04328182
CG1_02_37_21
GCA_001871205.1ScaffoldMNUU00000000SAMN04328183
CG1_02_37_44
GCA_001871235.1ScaffoldMNUV00000000SAMN04328191
CG1_02_41_21
GCA_001871285.1ScaffoldMNUY00000000SAMN04328229
CG1_02_37_22
GCA_001871945.1ContigMNXD00000000SAMN04328243
CG1_02_38_174
GCA_001873165.1ScaffoldMNYO00000000SAMN04328266
CG2_30_37_12
GCA_001871695.1ScaffoldMNVL00000000SAMN04328174
CG1_02_42_14
GCA_001871365.1ScaffoldMNVB00000000SAMN04328185
CG1_02_38_13
GCA_001873195.1ScaffoldMNYR00000000SAMN04328269
CG2_30_39_24
GCA_001873215.1ScaffoldMNYS00000000SAMN04328268
CG2_30_37_29
GCA_001871435.1ScaffoldMNVC00000000SAMN04328179
CG1_02_32_51
GCA_001871445.1ScaffoldMNVD00000000SAMN04328193
CG1_02_41_34
GCA_001872685.1ScaffoldMNWS00000000SAMN04328203
CG1_02_48_14
GCA_001871475.1ScaffoldMNVE00000000SAMN04328173
CG1_02_47_40
GCA_001871535.1ScaffoldMNVF00000000SAMN04328169
CG1_02_49_24
GCA_001871495.1ScaffoldMNVG00000000SAMN04328221
CG1_02_51_15
GCA_001871595.1ScaffoldMNVH00000000SAMN04328170
CG1_02_55_22
GCA_001871605.1ScaffoldMNVI00000000SAMN04328171
CG1_02_55_41
GCA_001871655.1ScaffoldMNVJ00000000SAMN04328172
CG1_02_60_51
GCA_001873875.1ScaffoldMNZX00000000SAMN04328314
CG2_30_41_165
GCA_001873245.1ScaffoldMNYT00000000SAMN04328275
CG2_30_45_14
GCA_001871725.1ScaffoldMNVM00000000SAMN04328178
CG1_02_31_12
GCA_001871765.1ScaffoldMNVN00000000SAMN04328233
CG1_02_43_90
GCA_001871775.1ScaffoldMNVO00000000SAMN04328200
CG1_02_47_685
GCA_001873305.1ScaffoldMNYX00000000SAMN04328271
CG2_30_43_9
GCA_001871815.1ScaffoldMNVP00000000SAMN04328226
CG1_02_40_15
GCA_001871865.1ScaffoldMNVQ00000000SAMN04328232
CG1_02_41_171
GCA_001872775.1ScaffoldMNXF00000000SAMN04328245
CG1_02_43_210
GCA_001873995.1ScaffoldMNVR00000000SAMN04328230
CG1_02_44_16
GCA_001874025.1ScaffoldMNVS00000000SAMN04328228
CG1_02_46_14
GCA_001873045.1ScaffoldMNVT00000000SAMN04328231
CG1_02_49_10
GCA_001872105.1ScaffoldMNVU00000000SAMN04328227
CG1_02_49_16
GCA_001872125.1ScaffoldMNVV00000000SAMN04328217
CG1_02_30_18
GCA_001872145.1ScaffoldMNVW00000000SAMN04328166
CG1_02_31_27
GCA_001872795.1ScaffoldMNXG00000000SAMN04328240
CG1_02_32_132
GCA_001872185.1ScaffoldMNVX00000000SAMN04328218
CG1_02_32_21
GCA_001872325.1ScaffoldMNVY00000000SAMN04328219
CG1_02_35_32
GCA_001872315.1ScaffoldMNVZ00000000SAMN04328220
CG1_02_39_14
GCA_001872335.1ContigMNWA00000000SAMN04328197
CG1_02_43_31
GCA_001873435.1ContigMNZB00000000SAMN04328264
CG2_30_36_39
GCA_001872565.1ScaffoldMNWO00000000SAMN04328234
CG1_02_41_10
GCA_001872575.1ContigMNWP00000000SAMN04328202
CG1_02_54_53
GCA_001873565.1ScaffoldMNZJ00000000SAMN04328301
CG2_30_44_17
GCA_001873595.1ScaffoldMNZM00000000SAMN04328260
CG2_30_33_16
GCA_001873625.1ScaffoldMNZN00000000SAMN04328313
CG2_30_41_52
GCA_001873665.1ScaffoldMNZO00000000SAMN04328261
CG2_30_35_20
GCA_001873755.1ScaffoldMNZT00000000SAMN04328296
CG2_30_54_11
GCA_001872765.1ScaffoldMNWU00000000SAMN04328239
CG1_02_33_12
GCA_001872825.1ScaffoldMNWV00000000SAMN04328225
CG1_02_47_18
GCA_001871415.1ScaffoldMNWW00000000SAMN04328224
CG1_02_57_44
GCA_001871625.1ScaffoldMNWX00000000SAMN04328186
CG1_02_39_135
GCA_001871935.1ScaffoldMNUL00000000SAMN04328176
CG1_02_60_18
GCA_001871515.1ScaffoldMNXW00000000SAMN04328306
CG2_30_57_122
GCA_001872845.1ScaffoldMNXX00000000SAMN04328307
CG2_30_59_20
GCA_001872855.1ScaffoldMNXY00000000SAMN04328308
CG2_30_60_41
GCA_001872925.1ScaffoldMNYD00000000SAMN04328295
CG2_30_46_19
GCA_001873005.1ScaffoldMNYE00000000SAMN04328256
CG2_30_46_9
GCA_001871035.1ScaffoldMNUN00000000SAMN04328204
CG1_02_45_11
GCA_001873905.1ScaffoldMNYF00000000SAMN04328279
CG2_30_43_15
GCA_001873925.1ScaffoldMNYG00000000SAMN04328303
CG2_30_63_29
GCA_001873935.1ScaffoldMNYH00000000SAMN04328283
CG2_30_66_27
GCA_001874005.1ScaffoldMNYJ00000000SAMN04328281
CG2_30_51_40
GCA_001873115.1ScaffoldMNYK00000000SAMN04328284
CG2_30_60_27
GCA_001871085.1ScaffoldMNUQ00000000SAMN04328205
CG1_02_65_16
GCA_001871125.1ScaffoldMNXB00000000SAMN04328241
CG1_02_37_114
GCA_001871115.1ScaffoldMNUR00000000SAMN04328207
CG1_02_56_21
GCA_001871155.1ScaffoldMNUS00000000SAMN04328208
CG1_02_63_36
GCA_001873075.1ScaffoldMNYL00000000SAMN04328287
CG2_30_45_31
GCA_001871275.1ScaffoldMNUW00000000SAMN04328209
CG1_02_35_72
GCA_001873065.1ContigMNYM00000000SAMN04328302
CG2_30_31_66
GCA_001873105.1ScaffoldMNYN00000000SAMN04328289
CG2_30_34_30
GCA_001871025.1ScaffoldMNXC00000000SAMN04328244
CG1_02_56_997
GCA_001871255.1ScaffoldMNUX00000000SAMN04328236
CG1_02_60_325
GCA_001872865.1ScaffoldMNXH00000000SAMN04328246
CG1_02_60_948
GCA_001871315.1ScaffoldMNUZ00000000SAMN04328237
CG1_02_36_14
GCA_001873135.1ScaffoldMNYP00000000SAMN04328310
CG2_30_36_10
GCA_001871525.1ContigMNXE00000000SAMN04328242
CG1_02_62_390
GCA_001871325.1ScaffoldMNVA00000000SAMN04328210
CG1_02_37_35
GCA_001873185.1ScaffoldMNYQ00000000SAMN04328290
CG2_30_36_16
GCA_001871685.1ScaffoldMNVK00000000SAMN04328216
CG1_02_44_142
GCA_001873265.1ScaffoldMNYU00000000SAMN04328294
CG2_30_41_42
GCA_001873285.1ScaffoldMNYV00000000SAMN04328285
CG2_30_53_67
GCA_001873295.1ScaffoldMNYW00000000SAMN04328286
CG2_30_70_394
GCA_001873365.1ScaffoldMNYZ00000000SAMN04328299
CG2_30_40_61
GCA_001873375.1ScaffoldMNZA00000000SAMN04328304
CG2_30_44_21
GCA_001872205.1ScaffoldMNWB00000000SAMN04328180
CG1_02_36_42
GCA_001872225.1ScaffoldMNWC00000000SAMN04328181
CG1_02_37_13
GCA_001872245.1ContigMNWD00000000SAMN04328184
CG1_02_37_51
GCA_001872265.1ScaffoldMNWE00000000SAMN04328187
CG1_02_39_15
GCA_001872305.1ScaffoldMNWF00000000SAMN04328189
CG1_02_40_25
GCA_001872385.1ContigMNWG00000000SAMN04328188
CG1_02_40_82
GCA_001872435.1ScaffoldMNWH00000000SAMN04328190
CG1_02_41_12
GCA_001872425.1ScaffoldMNWI00000000SAMN04328192
CG1_02_41_26
GCA_001872405.1ScaffoldMNWJ00000000SAMN04328195
CG1_02_42_13
GCA_001872485.1ScaffoldMNWK00000000SAMN04328199
CG1_02_44_31
GCA_001872495.1ScaffoldMNWL00000000SAMN04328167
CG1_02_44_65
GCA_001872505.1ScaffoldMNWM00000000SAMN04328201
CG1_02_50_68
GCA_001872545.1ScaffoldMNWN00000000SAMN04328175
CG1_02_58_44
GCA_001873405.1ScaffoldMNZC00000000SAMN04328262
CG2_30_36_18
GCA_001873425.1ScaffoldMNZD00000000SAMN04328263
CG2_30_36_21
GCA_001873465.1ContigMNZE00000000SAMN04328265
CG2_30_36_38
GCA_001873485.1ScaffoldMNZF00000000SAMN04328272
CG2_30_44_11
GCA_001873495.1ScaffoldMNZG00000000SAMN04328273
CG2_30_44_18
GCA_001873515.1ScaffoldMNZH00000000SAMN04328276
CG2_30_45_37
GCA_001873525.1ScaffoldMNZI00000000SAMN04328277
CG2_30_48_51
GCA_001873635.1ScaffoldMNZK00000000SAMN04328300
CG2_30_38_12
GCA_001872645.1ScaffoldMNWQ00000000SAMN04328235
CG1_02_60_36
GCA_001872725.1ScaffoldMNWR00000000SAMN04328211
CG1_02_64_396
GCA_001873855.1ScaffoldMNZZ00000000SAMN04328316
CG2_30_10_405
GCA_001873585.1ScaffoldMNZL00000000SAMN04328293
CG2_30_65_12
GCA_001873675.1ScaffoldMNZP00000000SAMN04328280
CG2_30_49_12
GCA_001873745.1ScaffoldMNZQ00000000SAMN04328282
CG2_30_58_14
GCA_001873705.1ScaffoldMNZR00000000SAMN04328311
CG2_30_61_12
GCA_001873715.1ScaffoldMNZS00000000SAMN04328312
CG2_30_44_34
GCA_001872735.1ContigMNWT00000000SAMN04328238
CG1_02_43_26
GCA_001871355.1ScaffoldMNWY00000000SAMN04328212
CG1_02_49_23
GCA_001871925.1ScaffoldMNWZ00000000SAMN04328213
CG1_02_53_45
GCA_001871195.1ContigMNXA00000000SAMN04328214
CG1_02_55_237
GCA_001873795.1ContigMNZV00000000SAMN04328291
CG2_30_46_52
GCA_001873825.1ScaffoldMNZW00000000SAMN04328292
CG2_30_59_37
GCA_001872885.1ScaffoldMNXZ00000000SAMN04328247
CG2_30_31_98
GCA_001871995.1ScaffoldMNUM00000000SAMN04328194
CG1_02_42_9
GCA_001872935.1ContigMNYB00000000SAMN04328249
CG2_30_33_46
GCA_001872945.1ScaffoldMNYC00000000SAMN04328267
CG2_30_37_16
GCA_001873785.1ScaffoldMNZU00000000SAMN04328250
CG2_30_40_12
GCA_001872985.1ScaffoldMNYA00000000SAMN04328278
CG2_30_54_10
SRA Data Details
ParameterValue
Data volume, Gbases34
Data volume, Mbytes21110

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