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Accession: PRJNA297196 ID: 297196

soil metagenome

Meadow Soil samples from Angelo, CA Genome sequencing and assembly

Methylotrophy and archaeal heterotrophy dominate carbon turnover below the grass root zone

Annually, half of all plant-derived carbon is added to soil; most is rapidly respired to CO2 but some is exported to sustain life in lower horizons and the deeper biosphere. More...

AccessionPRJNA297196
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsoil metagenome[Taxonomy ID: 410658]
unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
PublicationsButterfield CN et al., "Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone.", PeerJ, 2016;4:e2687
SubmissionRegistration date: 23-Dec-2016
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)54316
WGS master211
Genomic DNA1
SRA Experiments10
Protein Sequences402941
Publications
PubMed1
PMC1
Other datasets
BioSample227
Assembly212
Assembly details:
Assembly levelNumber of Assemblies
1
203
8
212
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_001920875.1ScaffoldMNKP00000000
SAMN04327715
GCA_001920835.1ScaffoldMNKO00000000
SAMN04327719
GCA_001920815.1ScaffoldMNKN00000000
SAMN04327714
GCA_001920805.1ScaffoldMNKM00000000
SAMN04327683
GCA_001920795.1ScaffoldMNKL00000000
SAMN04327710
GCA_001920755.1ScaffoldMNKK00000000
SAMN04327716
GCA_001920415.1ScaffoldMNJR00000000
SAMN04327758
GCA_001920375.1ScaffoldMNJQ00000000
SAMN04327753
GCA_001920165.1ScaffoldMNJG00000000
SAMN04327796
GCA_001920155.1ScaffoldMNJF00000000
SAMN04327790
GCA_001919715.1ScaffoldMNIJ00000000
SAMN04327674
GCA_001919455.1ScaffoldMNHX00000000
SAMN04327952
GCA_001919435.1ScaffoldMNHW00000000
SAMN04327961
GCA_001919445.1ScaffoldMNHV00000000
SAMN04327960
GCA_001919385.1ScaffoldMNHU00000000
SAMN04327971
GCA_001919375.1ScaffoldMNHT00000000
SAMN04327959
GCA_001919365.1ScaffoldMNHS00000000
SAMN04327954
GCA_001918905.1ScaffoldMNGV00000000
SAMN04328011
GCA_001918885.1ScaffoldMNGU00000000
SAMN04327998
GCA_001918865.1ScaffoldMNGT00000000
SAMN04328008
GCA_001918415.1ScaffoldMNFX00000000
SAMN04327873
GCA_001918405.1ScaffoldMNFW00000000
SAMN04327893
GCA_001918395.1ScaffoldMNFV00000000
SAMN04327895
GCA_001918375.1ScaffoldMNFU00000000
SAMN04327879
GCA_001918335.1ScaffoldMNFT00000000
SAMN04327899
GCA_001917925.1ScaffoldMNEY00000000
SAMN04327835
GCA_001917905.1ScaffoldMNEX00000000
SAMN04327850
GCA_001917455.1ScaffoldMNEB00000000
SAMN04327909
GCA_001917435.1ScaffoldMNEA00000000
SAMN04327919
GCA_001915135.1ScaffoldMNDZ00000000
SAMN04327918
GCA_001914795.1ScaffoldMNDF00000000
SAMN04327808
GCA_001914785.1ScaffoldMNDE00000000
SAMN04327818
GCA_001914775.1ScaffoldMNDD00000000
SAMN04327823
GCA_001914735.1ScaffoldMNDC00000000
SAMN04327820
GCA_001918935.1ScaffoldMNGW00000000
SAMN04327992
GCA_001917495.1ScaffoldMNEC00000000
SAMN04327924
GCA_001914815.1ScaffoldMNDG00000000
SAMN04327822
GCA_001920735.1ScaffoldMNKJ00000000
SAMN04327713
GCA_001920725.1ScaffoldMNKI00000000
SAMN04327712
GCA_001920335.1ScaffoldMNJP00000000
SAMN04327750
GCA_001920325.1ScaffoldMNJO00000000
SAMN04327755
GCA_001920275.1ScaffoldMNJM00000000
SAMN04327751
GCA_001920115.1ScaffoldMNJE00000000
SAMN04327801
GCA_001920095.1ScaffoldMNJD00000000
SAMN04327795
GCA_001920085.1ScaffoldMNJC00000000
SAMN04327798
GCA_001919355.1ScaffoldMNHR00000000
SAMN04327949
GCA_001919305.1ScaffoldMNHQ00000000
SAMN04327963
GCA_001918845.1ScaffoldMNGS00000000
SAMN04327994
GCA_001918325.1ScaffoldMNFS00000000
SAMN04327876
GCA_001917895.1ScaffoldMNEW00000000
SAMN04327839
GCA_001917445.1ScaffoldMNDY00000000
SAMN04327922
GCA_001917385.1ScaffoldMNDX00000000
SAMN04327921
GCA_001915145.1ScaffoldMNDW00000000
SAMN04327917
GCA_001914705.1ScaffoldMNDB00000000
SAMN04327824
GCA_001920255.1ScaffoldMNJL00000000
SAMN04327754
GCA_001920055.1ScaffoldMNJB00000000
SAMN04327799
GCA_001915105.1ScaffoldMNDV00000000
SAMN04327923
GCA_001920045.1ScaffoldMNJA00000000
SAMN04327800
GCA_001918835.1ScaffoldMNGR00000000
SAMN04327990
GCA_001917855.1ScaffoldMNEU00000000
SAMN04327838
GCA_001920025.1ScaffoldMNIZ00000000
SAMN04327781
GCA_001920245.1ScaffoldMNJK00000000
SAMN04327757
GCA_001919685.1ScaffoldMNIH00000000
SAMN04327673
GCA_001918295.1ScaffoldMNFQ00000000
SAMN04327886
GCA_001917865.1ScaffoldMNEV00000000
SAMN04327844
GCA_001920485.1ScaffoldMNJX00000000
SAMN04327721
GCA_001920495.1ScaffoldMNJW00000000
SAMN04327708
GCA_001920475.1ScaffoldMNJV00000000
SAMN04327707
GCA_001919805.1ScaffoldMNIO00000000
SAMN04327787
GCA_001919785.1ScaffoldMNIN00000000
SAMN04327762
GCA_001919765.1ScaffoldMNIM00000000
SAMN04327794
GCA_001919515.1ScaffoldMNHZ00000000
SAMN04327670
GCA_001919045.1ScaffoldMNHC00000000
SAMN04327956
GCA_001919035.1ScaffoldMNHB00000000
SAMN04327964
GCA_001919015.1ScaffoldMNHA00000000
SAMN04327925
GCA_001918485.1ScaffoldMNGA00000000
SAMN04328012
GCA_001918035.1ScaffoldMNFE00000000
SAMN04327883
GCA_001918015.1ScaffoldMNFD00000000
SAMN04327884
GCA_001918005.1ScaffoldMNFC00000000
SAMN04327888
GCA_001917585.1ScaffoldMNEG00000000
SAMN04327837
GCA_001917535.1ScaffoldMNEF00000000
SAMN04327836
GCA_001917525.1ScaffoldMNEE00000000
SAMN04327833
GCA_001914905.1ScaffoldMNDK00000000
SAMN04327911
GCA_001914885.1ScaffoldMNDJ00000000
SAMN04327906
GCA_001914555.1ScaffoldMNCS00000000
SAMN04327825
GCA_001914535.1ScaffoldMNCR00000000
SAMN04327821
GCA_001914455.1ScaffoldMNCQ00000000
SAMN04327827
GCA_001914465.1ScaffoldMNCP00000000
SAMN04327816
GCA_001920315.1ScaffoldMNJN00000000
SAMN04327756
GCA_001920665.1ScaffoldMNKF00000000
SAMN04327720
GCA_001920645.1ScaffoldMNKE00000000
SAMN04327709
GCA_001919975.1ScaffoldMNIX00000000
SAMN04327803
GCA_001919965.1ScaffoldMNIW00000000
SAMN04327791
GCA_001919645.1ScaffoldMNIG00000000
SAMN04327672
GCA_001919625.1ScaffoldMNIF00000000
SAMN04327671
GCA_001919605.1ScaffoldMNIE00000000
SAMN04327668
GCA_001919215.1ScaffoldMNHM00000000
SAMN04327951
GCA_001919205.1ScaffoldMNHL00000000
SAMN04327955
GCA_001919195.1ScaffoldMNHK00000000
SAMN04327965
GCA_001918815.1ScaffoldMNGQ00000000
SAMN04328009
GCA_001918795.1ScaffoldMNGP00000000
SAMN04328013
GCA_001918245.1ScaffoldMNFO00000000
SAMN04327889
GCA_001918235.1ScaffoldMNFN00000000
SAMN04327887
GCA_001918205.1ScaffoldMNFM00000000
SAMN04327892
GCA_001918185.1ScaffoldMNFL00000000
SAMN04327874
GCA_001917825.1ScaffoldMNET00000000
SAMN04327843
GCA_001917815.1ScaffoldMNES00000000
SAMN04327847
GCA_001917775.1ScaffoldMNER00000000
SAMN04327834
GCA_001917785.1ScaffoldMNEQ00000000
SAMN04327846
GCA_001917745.1ScaffoldMNEP00000000
SAMN04327851
GCA_001917735.1ScaffoldMNEO00000000
SAMN04327840
GCA_001920635.1ScaffoldMNKD00000000
SAMN04327686
GCA_001920575.1ScaffoldMNKC00000000
SAMN04327724
GCA_001919175.1ContigMNHJ00000000
SAMN04327957
GCA_001918765.1ScaffoldMNGO00000000
SAMN04328000
GCA_001918745.1ScaffoldMNGN00000000
SAMN04328004
GCA_001918735.1ScaffoldMNGM00000000
SAMN04328002
GCA_001918715.1ScaffoldMNGL00000000
SAMN04328014
GCA_001919945.1ScaffoldMNIV00000000
SAMN04327782
GCA_001919235.1ScaffoldMNHI00000000
SAMN04327943
GCA_001969245.1Complete genomeSAMN04116731
GCA_001919935.1ScaffoldMNIU00000000
SAMN04327760
GCA_001918675.1ScaffoldMNGK00000000
SAMN04327991
GCA_001920585.1ScaffoldMNKB00000000
SAMN04327711
GCA_001918665.1ScaffoldMNGJ00000000
SAMN04327997
GCA_001918655.1ScaffoldMNGI00000000
SAMN04328010
GCA_001918165.1ScaffoldMNFK00000000
SAMN04327894
GCA_001918155.1ScaffoldMNFJ00000000
SAMN04327890
GCA_001917705.1ScaffoldMNEN00000000
SAMN04327845
GCA_001920565.1ContigMNKA00000000
SAMN04327679
GCA_001919915.1ScaffoldMNIT00000000
SAMN04327793
GCA_001918635.1ScaffoldMNGH00000000
SAMN04328016
GCA_001914695.1ScaffoldMNCZ00000000
SAMN04327817
GCA_001920555.1ScaffoldMNJZ00000000
SAMN04327717
GCA_001919895.1ScaffoldMNIS00000000
SAMN04327792
GCA_001919865.1ScaffoldMNIR00000000
SAMN04327786
GCA_001919595.1ContigMNID00000000
SAMN04327676
GCA_001919565.1ScaffoldMNIC00000000
SAMN04327667
GCA_001919545.1ContigMNIB00000000
SAMN04327678
GCA_001919535.1ScaffoldMNIA00000000
SAMN04327677
GCA_001919145.1ScaffoldMNHH00000000
SAMN04327970
GCA_001919115.1ScaffoldMNHG00000000
SAMN04327962
GCA_001918595.1ScaffoldMNGG00000000
SAMN04327996
GCA_001918575.1ScaffoldMNGF00000000
SAMN04327993
GCA_001918585.1ScaffoldMNGE00000000
SAMN04328006
GCA_001918555.1ScaffoldMNGD00000000
SAMN04328007
GCA_001918525.1ScaffoldMNGC00000000
SAMN04327995
GCA_001918125.1ScaffoldMNFI00000000
SAMN04327882
GCA_001918115.1ScaffoldMNFH00000000
SAMN04327875
GCA_001918085.1ScaffoldMNFG00000000
SAMN04327885
GCA_001917695.1ScaffoldMNEM00000000
SAMN04327848
GCA_001917665.1ScaffoldMNEL00000000
SAMN04327852
GCA_001917655.1ScaffoldMNEK00000000
SAMN04327849
GCA_001917615.1ScaffoldMNEJ00000000
SAMN04327841
GCA_001917625.1ScaffoldMNEI00000000
SAMN04327853
GCA_001914645.1ScaffoldMNCY00000000
SAMN04327830
GCA_001914635.1ContigMNCX00000000
SAMN04327829
GCA_001915025.1ScaffoldMNDR00000000
SAMN04327915
GCA_001915005.1ScaffoldMNDQ00000000
SAMN04327916
GCA_001914985.1ScaffoldMNDP00000000
SAMN04327920
GCA_001914625.1ScaffoldMNCW00000000
SAMN04327813
GCA_001914615.1ScaffoldMNCV00000000
SAMN04327819
GCA_001914565.1ScaffoldMNCU00000000
SAMN04327814
GCA_001920195.1ScaffoldMNJI00000000
SAMN04327727
GCA_001919105.1ScaffoldMNHF00000000
SAMN04327940
GCA_001920235.1ScaffoldMNJJ00000000
SAMN04327752
GCA_001919995.1ScaffoldMNIY00000000
SAMN04327789
GCA_001919845.1ScaffoldMNIQ00000000
SAMN04327761
GCA_001918255.1ScaffoldMNFP00000000
SAMN04327896
GCA_001914965.1ScaffoldMNDO00000000
SAMN04327901
GCA_001915055.1ScaffoldMNDS00000000
SAMN04327908
GCA_001914715.1ScaffoldMNDA00000000
SAMN04327812
GCA_001919095.1ScaffoldMNHE00000000
SAMN04327926
GCA_001920515.1ScaffoldMNJY00000000
SAMN04327718
GCA_001919835.1ScaffoldMNIP00000000
SAMN04327802
GCA_001919055.1ScaffoldMNHD00000000
SAMN04327928
GCA_001918505.1ScaffoldMNGB00000000
SAMN04328003
GCA_001918075.1ScaffoldMNFF00000000
SAMN04327881
GCA_001917575.1ScaffoldMNEH00000000
SAMN04327842
GCA_001917375.1ScaffoldMNDN00000000
SAMN04327903
GCA_001914955.1ScaffoldMNDM00000000
SAMN04327910
GCA_001914935.1ScaffoldMNDL00000000
SAMN04327902
GCA_001914545.1ScaffoldMNCT00000000
SAMN04327828
GCA_001920445.1ContigMNJU00000000
SAMN04327681
GCA_001920405.1ScaffoldMNJT00000000
SAMN04327680
GCA_001920395.1ScaffoldMNJS00000000
SAMN04327723
GCA_001918995.1ContigMNGZ00000000
SAMN04327966
GCA_001918975.1ScaffoldMNGY00000000
SAMN04327968
GCA_001919295.1ScaffoldMNHP00000000
SAMN04327967
GCA_001918945.1ScaffoldMNGX00000000
SAMN04327969
GCA_001917505.1ScaffoldMNED00000000
SAMN04327832
GCA_001918475.1ScaffoldMNFZ00000000
SAMN04327999
GCA_001918455.1ScaffoldMNFY00000000
SAMN04328015
GCA_001917995.1ScaffoldMNFB00000000
SAMN04327891
GCA_001917965.1ScaffoldMNFA00000000
SAMN04327878
GCA_001920175.1ScaffoldMNJH00000000
SAMN04327759
GCA_001919755.1ScaffoldMNIL00000000
SAMN04327788
GCA_001919725.1ScaffoldMNIK00000000
SAMN04327797
GCA_001919485.1ScaffoldMNHY00000000
SAMN04327675
GCA_001917935.1ScaffoldMNEZ00000000
SAMN04327898
GCA_001914875.1ScaffoldMNDI00000000
SAMN04327907
GCA_001914855.1ContigMNDH00000000
SAMN04327912
GCA_001914485.1ScaffoldMNCO00000000
SAMN04327815
GCA_001914475.1ScaffoldMNCN00000000
SAMN04327826
GCA_001920715.1ScaffoldMNKH00000000
SAMN04327685
GCA_001920655.1ScaffoldMNKG00000000
SAMN04327726
GCA_001919675.1ScaffoldMNII00000000
SAMN04327669
GCA_001919285.1ScaffoldMNHO00000000
SAMN04327953
GCA_001919275.1ScaffoldMNHN00000000
SAMN04327958
GCA_001918315.1ScaffoldMNFR00000000
SAMN04327880
GCA_001915075.1ScaffoldMNDU00000000
SAMN04327913
GCA_001915065.1ScaffoldMNDT00000000
SAMN04327914
SRA Data Details
ParameterValue
Data volume, Gbases220
Data volume, Tbytes0.13

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