Bacteria (ID 387386) - BioProject

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Accession: PRJNA387386 ID: 387386

Bacteria

Draft genomes of anoxygenic phototrophic bacteria

Sequencing and assembly of draft genomes of cultured anoxygenic phototrophic bacteria

Accession	PRJNA387386
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Imhoff JF et al., "Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.", Microorganisms, 2020 Dec 26;9(1) Imhoff JF et al., "New insights into the metabolic potential of the phototrophic purple bacterium Rhodopila globiformis DSM 161(T) from its draft genome sequence and evidence for a vanadium-dependent nitrogenase.", Arch Microbiol, 2018 Aug;200(6):847-857
Submission	Registration date: 22-May-2017 GEOMAR Helmholtz Centre for Ocean Research Kiel
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	634
WGS master	58
Genomic DNA	1
SRA Experiments	59
Protein Sequences	21861
Publications
PubMed	2
PMC	1
Other datasets
BioSample	59
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

1
35
23
59

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_016653175.1	NHSC00000000		SAMN07156359	IM162	Afifella marina
GCA_016584015.1	NRSE00000000		SAMN07535024	DSM 2698	Afifella marina DSM 2698
GCA_016584005.1	NRSF00000000		SAMN07535016	IM 163	Afifella marina
GCA_020144925.1	NSLC00000000		SAMN07535012	IM 167	Afifella sp. IM 167
GCA_016584135.1	NRSL00000000		SAMN07535030	MT 86	Allochromatium vinosum
GCA_016583745.1	NRRQ00000000		SAMN07535000	DSM 169	Chromatium okenii
GCA_016583765.1	NRRR00000000		SAMN07535009	DSM 5161	Chromatium weissei
GCA_022406875.1		1	SAMN07535027	DSM 15479	Ectothiorhodosinus mongolicus
GCA_016584115.1	NRSK00000000		SAMN07535031	DSM 237	Ectothiorhodospira mobilis
GCA_016584105.1	NRSM00000000		SAMN07535032	DSM 243	Ectothiorhodospira shaposhnikovii
GCA_016584085.1	NRSJ00000000		SAMN07534996	DSM 11080	Halochromatium glycolicum
GCA_016653315.1	NHSH00000000		SAMN07156354	DSM 18859	Halochromatium roseum
GCA_016653295.1	NHSF00000000		SAMN07156356	DSM 4395	Halochromatium salexigens
GCA_016583625.1	NRRN00000000		SAMN07535005	DSM 2110	Halorhodospira abdelmalekii
GCA_016583605.1	NRRM00000000		SAMN07534994	DSM 1059	Halorhodospira halochloris
GCA_016583685.1	NRRO00000000		SAMN07535014	IM 9630	Halorhodospira halophila
GCA_016653405.1	NHSN00000000		SAMN07156348	IM9626	Halorhodospira halophila
GCA_016653275.1	NHSE00000000		SAMN07156357	IM9620	Halorhodospira halophila
GCA_016584055.1	NRSH00000000		SAMN07535017	DSM 15116	Halorhodospira neutriphila
GCA_016583905.1	NRRY00000000		SAMN07535007	DSM 25653	Lamprobacter modestohalophilus
GCA_016583515.1	NRRH00000000		SAMN07535002	DSM 203	Marichromatium gracile
GCA_016584045.1	NRSG00000000		SAMN07534999	DSM 15382	Paracraurococcus ruber
GCA_016653435.1	NHSP00000000		SAMN07156346	DSM 11550	Phaeovulum veldkampii DSM 11550
GCA_016583795.1	NRRS00000000		SAMN07535018	DSM 5261	Rhabdochromatium marinum
GCA_020023995.1	NRRD00000000		SAMN07535026	TJ_12	Rhodobacter sp. TJ_12
GCA_016653255.1	NHSD00000000		SAMN07156358	LMG 28126	Rhodobaculum claviforme
GCA_016653375.1	NHSL00000000		SAMN07156350	DSM 11290	Rhodobium orientis
GCA_002937135.1	NRRJ00000000		SAMN07534998	DSM 137	Rhodoblastus acidophilus
GCA_002937075.1	NHSJ00000000		SAMN07156352	DSM 16996	Rhodoblastus sphagnicola
GCA_016653115.1	NHRX00000000		SAMN07156364	DSM 168	Rhodocyclus purpureus
GCA_016583865.1	NRRZ00000000		SAMN07535013	IM 230	Rhodocyclus tenuis
GCA_016583655.1	NRRK00000000		SAMN07535028	DSM 10138	Rhodoferax fermentans
GCA_002937115.1	NHRY00000000		SAMN07156363	DSM 161	Rhodopila globiformis
GCA_016653355.1	NHSK00000000		SAMN07156351	DSM 11907	Rhodoplanes elegans
GCA_002937155.1	NRSI00000000		SAMN07534997	DSM 126	Rhodopseudomonas palustris
GCA_016583945.1	NRSB00000000		SAMN07534995	DSM 1068	Rhodospirillum rubrum
GCA_016583925.1	NRSC00000000		SAMN07535019	DSM 107	Rhodospirillum rubrum
GCA_016653395.1	NHSM00000000		SAMN07156349	FR1-mutantIV	Rhodospirillum rubrum
GCA_016653215.1	NHSB00000000		SAMN07156360	IM261	Rhodothalassium salexigens
GCA_016653195.1	NHSA00000000		SAMN07156361	IM265	Rhodothalassium salexigens
GCA_016583875.1	NRRX00000000		SAMN07535020	DSM 2132	Rhodothalassium salexigens DSM 2132
GCA_016583505.1	NRRE00000000		SAMN07535029	DSM 9154	Rhodovibrio salinarum
GCA_016583645.1	NRRL00000000		SAMN07535021	DSM 9895	Rhodovibrio sodomensis
GCA_016583705.1	NRRP00000000		SAMN07535008	DSM 2781	Rhodovulum adriaticum
GCA_016653305.1	NHSI00000000		SAMN07156353	DSM 18064	Rhodovulum imhoffii
GCA_016653205.1	NHRZ00000000		SAMN07156362	IM796	Rhodovulum sulfidophilum
GCA_020144965.1	NSLA00000000		SAMN07535011	IM 456	Rubrivivax gelatinosus
GCA_016583785.1	NRRU00000000		SAMN07535022	IM 151	Rubrivivax gelatinosus
GCA_016583725.1	NRRT00000000		SAMN07535023	DSM 149	Rubrivivax gelatinosus
GCA_016583525.1	NRRI00000000		SAMN07535001	DSM 1709	Rubrivivax gelatinosus
GCA_020024005.1	NHSG00000000		SAMN07156355	DSM 43156	Streptomyces purpurogeneiscleroticus
GCA_016583985.1	NRSD00000000		SAMN07535006	DSM 21303	Thiocapsa imhoffii
GCA_016583835.1	NRRW00000000		SAMN07535015	Pfennig 8320	Thiococcus pfennigii
GCA_016583935.1	NRSA00000000		SAMN07535025	DSM 228	Thiococcus pfennigii
GCA_016653465.1	NHSQ00000000		SAMN07156345	DSM 178	Thiocystis minor
GCA_016583575.1	NRRG00000000		SAMN07535003	DSM 207	Thiocystis violacea
GCA_016583565.1	NRRF00000000		SAMN07535004	DSM 208	Thiocystis violacea
GCA_016583825.1	NRRV00000000		SAMN07535010	DSM 6210	Thiohalocapsa halophila
GCA_016653415.1	NHSO00000000		SAMN07156347	6511	Thiorhodovibrio winogradskyi

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	24222

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Bacteria

Draft genomes of anoxygenic phototrophic bacteria

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