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Accession: PRJNA522277 ID: 522277

cold seep metagenome

Elba SIP-enriched marine methane seep metagenome

SIP-enriched metagenome of the sediment-water interphase of a shallow marine methane seep near the isle of Elba in the Mediterranean Sea

Accession	PRJNA522277
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	cold seep metagenome[Taxonomy ID: 1583376] unclassified sequences; metagenomes; ecological metagenomes; cold seep metagenome
Publications	Taubert M et al., "Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.", Environ Microbiol, 2019 Oct;21(10):3780-3795
Submission	Registration date: 10-Jul-2019 Leibniz Institute DSMZ
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5180
WGS master	15
SRA Experiments	15
Publications
PubMed	1
Other datasets
BioSample	15
Assembly	15

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

3
12
15

Assembly	Level	WGS	BioSample	Isolate	Taxonomy
GCA_006844765.1		SPJV00000000	SAMN11078091	BinT2.006_T3.003	Alphaproteobacteria bacterium
GCA_006844605.1		SPJN00000000	SAMN11078066	BinT2.0009	Hyphomicrobiales bacterium
GCA_006844675.1		SPJR00000000	SAMN11078076	BinT1.009_T2.004_T3.006	Methylococcaceae bacterium
GCA_006844705.1		SPJS00000000	SAMN11078081	BinT1.003_T2.003_T3.002	Methylococcaceae bacterium
GCA_006844725.1		SPJT00000000	SAMN11078086	BinElbaBin_T2.010	Methylococcaceae bacterium
GCA_006844585.1		SPJM00000000	SAMN11077622	BinT2.0024_T3.008	Methylococcaceae bacterium
GCA_006844635.1		SPJO00000000	SAMN11078069	BinT2.027	Methylophilaceae bacterium
GCA_006844685.1		SPJQ00000000	SAMN11078074	BinT2.008_T3.001	Methylophilaceae bacterium
GCA_006844665.1		SPJP00000000	SAMN11078070	BinT2.007	Paracoccaceae bacterium
GCA_006844755.1		SPJU00000000	SAMN11078088	BinT0.002	Vibrionaceae bacterium
GCA_006844805.1		SPJW00000000	SAMN11078092	BinT1.029	bacterium
GCA_006844845.1		SPJL00000000	SAMN10925998	-	cold seep metagenome
GCA_006844825.1		SPJJ00000000	SAMN10925908	-	cold seep metagenome
GCA_006844875.1		SPJK00000000	SAMN10925997	-	cold seep metagenome
GCA_006844795.1		SPJI00000000	SAMN10925871	-	cold seep metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	42
Data volume, Mbytes	23766

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BioProject Links for Nucleotide (Select 1700464763) (1)
BioProject
cold seep metagenome
cold seep metagenome
Elba SIP-enriched marine methane seep metagenome

BioProject
Assembly for Nucleotide (Select 1700464757) (1)
Assembly
Protein Links for Nucleotide (Select 2697878932) (13)
Protein
MAG: Vibrionaceae bacterium isolate BinT0.002 contig_1100, whole genome shotgun ...
MAG: Vibrionaceae bacterium isolate BinT0.002 contig_1100, whole genome shotgun sequence
gi|1700464762|gb|SPJU01000002.1||gn :SPJU01|contig_1100

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