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Accession: PRJEB31266 ID: 522726

Metagenomic sequencing of cattle

Metagenomic sequencing of the rumen of 240 cattle from Scotland

Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. More...
AccessionPRJEB31266
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 15-Feb-2019
THE ROSLIN INSTITUTE
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)123535
WGS master4934
SRA Experiments244
Other datasets
BioSample5176
Assembly4934
Assembly details:
Assembly levelNumber of Assemblies
3714
1220
4934
AssemblyLevelWGSBioSampleTaxonomy
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GCA_902766695.1ContigCACXEY000000000SAMEA6149330
GCA_902766685.1ContigCACXEP000000000SAMEA6149331
GCA_902766975.1ContigCACXFH000000000SAMEA6149340
GCA_902766925.1ContigCACXFL000000000SAMEA6149345
GCA_902767275.1ContigCACXGY000000000SAMEA6149387
GCA_902770045.1ScaffoldCACXRO000000000SAMEA6149669
GCA_902769585.1ScaffoldCACXPT000000000SAMEA6149617
GCA_902769085.1ContigCACXNY000000000SAMEA6149577
GCA_902768215.1ScaffoldCACXKJ000000000SAMEA6149477
GCA_902764415.1ContigCACWVU000000000SAMEA6149097
GCA_902763805.1ScaffoldCACWTN000000000SAMEA6149033
GCA_902765215.1ContigCACWZA000000000SAMEA6149174
GCA_902765385.1ScaffoldCACWZO000000000SAMEA6149182
GCA_902764755.1ScaffoldCACWXC000000000SAMEA6149124
GCA_902764745.1ScaffoldCACWXA000000000SAMEA6149131
GCA_902764845.1ScaffoldCACWXJ000000000SAMEA6149136
GCA_902764865.1ScaffoldCACWXK000000000SAMEA6149140
GCA_902760885.1ScaffoldCACWIK000000000SAMEA6148739
GCA_902788475.1ScaffoldCADAKK000000000SAMEA6151511
GCA_902791645.1ScaffoldCADAWI000000000SAMEA6151824
GCA_902777245.1ScaffoldCACYTC000000000SAMEA6150383
GCA_902781205.1ScaffoldCACZIL000000000SAMEA6150786
GCA_902781415.1ScaffoldCACZJI000000000SAMEA6150806
GCA_902776105.1ScaffoldCACYPA000000000SAMEA6150271
GCA_902803895.1ContigCADCRQ000000000SAMEA6153052
GCA_902803655.1ContigCADCQQ000000000SAMEA6153028
SRA Data Details
ParameterValue
Data volume, Gbases6,404
Data volume, Tbytes2.90

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