Agrobacterium (ID 607555) - BioProject

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Accession: PRJNA607555 ID: 607555

Agrobacterium

Agrobacterium sp. Genome sequencing and assembly

Agrobacterium tumefaciens and Agrobacterium rhizogenes strains sequenced as part of a study on Ti plasmid evolution and epidemiology

Accession	PRJNA607555
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Weisberg AJ et al., "Unexpected conservation and global transmission of agrobacterial virulence plasmids.", Science, 2020 Jun 5;368(6495)
Submission	Registration date: 19-Feb-2020 Oregon State University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	304
WGS master	186
Genomic DNA	118
SRA Experiments	230
Protein Sequences	124568
Publications
PubMed	1
Other datasets
BioSample	209
Assembly	208

Assembly details:

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Assembly level

Number of Assemblies

22
94
92
208

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_013318355.2		5	SAMN14165480	2788	Agrobacterium fabrum
GCA_013320725.1	JAAMOS000000000		SAMN14165509	12D13	Agrobacterium fabrum
GCA_013318415.1	JAAMOQ000000000		SAMN14165502	1D132	Agrobacterium fabrum
GCA_013318095.2		5	SAMN14165530	Di1525a	Agrobacterium fabrum
GCA_013317735.2		4	SAMN14165517	N33/94	Agrobacterium fabrum
GCA_013317665.2		4	SAMN14165483	N40/94	Agrobacterium fabrum
GCA_013322225.1	JAAMFB000000000		SAMN14165469	FPH-AR2	Agrobacterium larrymoorei
GCA_013320535.1	JAAMOR000000000		SAMN14165621	17-1009	Agrobacterium pusense
GCA_013317795.2		5	SAMN14165467	LMG 267	Agrobacterium radiobacter
GCA_013320925.1	JAAMFC000000000		SAMN14165478	AS2A7	Agrobacterium rubi
GCA_013320905.1	JAAMCP000000000		SAMN14165513	A19/93	Agrobacterium rubi
GCA_013320895.1	JAANSB000000000		SAMN14165489	Eu2-1NK	Agrobacterium rubi
GCA_013320875.1	JAAMCO000000000		SAMN14165488	Eu2-1RS	Agrobacterium rubi
GCA_013320855.1	JAAMCN000000000		SAMN14165491	Eu3-2RS	Agrobacterium rubi
GCA_013320835.1	JAANSA000000000		SAMN14165485	Eu3-2NK	Agrobacterium rubi
GCA_017584165.1		7	SAMN14165629	W2/73	Agrobacterium rubi
GCA_013317635.1	JAAMOL000000000		SAMN14165561	NCPPB 2657	Agrobacterium salinitolerans
GCA_013318275.2		4	SAMN14165556	A74a	Agrobacterium tumefaciens
GCA_013318335.2		5	SAMN14165550	A47a	Agrobacterium tumefaciens
GCA_013317765.2		4	SAMN14165472	LMG 292	Agrobacterium tumefaciens
GCA_013318055.2		5	SAMN14165464	FPH-AT4	Agrobacterium tumefaciens
GCA_013318125.2		4	SAMN14165537	CG920	Agrobacterium tumefaciens
GCA_013317865.2		6	SAMN14165482	K224	Agrobacterium tumefaciens
GCA_013320675.2		5	SAMN14165557	14-818c	Agrobacterium tumefaciens
GCA_013318015.2		6	SAMN14165538	G3/79	Agrobacterium tumefaciens
GCA_013337085.1	JAALYJ000000000		SAMN14165465	W9/94	Agrobacterium tumefaciens
GCA_013317625.1	JAALYO000000000		SAMN14165525	O16/94	Agrobacterium tumefaciens
GCA_013317565.1	JAALYL000000000		SAMN14165527	T90/95	Agrobacterium tumefaciens
GCA_013317575.1	JAALYM000000000		SAMN14165515	P22/94	Agrobacterium tumefaciens
GCA_013317535.1	JAALYK000000000		SAMN14165516	W10/94	Agrobacterium tumefaciens
GCA_013317525.1	JAALYI000000000		SAMN14165546	Y2/73	Agrobacterium tumefaciens
GCA_013317515.1	JAALYH000000000		SAMN14165552	YO0101	Agrobacterium tumefaciens
GCA_013320795.1	JAAMCL000000000		SAMN14165551	06-478 st	Agrobacterium tumefaciens
GCA_013320775.1	JAAMCK000000000		SAMN14165554	06-617-1	Agrobacterium tumefaciens
GCA_013320735.1	JAAMCJ000000000		SAMN14165553	06-777-2L	Agrobacterium tumefaciens
GCA_013320715.1	JAAMCI000000000		SAMN14165508	12D1	Agrobacterium tumefaciens
GCA_013320685.1	JAAMCG000000000		SAMN14165626	16-1607-1A	Agrobacterium tumefaciens
GCA_013320635.1	JAAMCE000000000		SAMN14165496	16-280-1b	Agrobacterium tumefaciens
GCA_013320625.1	JAAMCF000000000		SAMN14165494	16-280-1a	Agrobacterium tumefaciens
GCA_013320615.1	JAAMCD000000000		SAMN14165619	17-1007	Agrobacterium tumefaciens
GCA_013320575.1	JAAMCB000000000		SAMN14165562	17-1344a	Agrobacterium tumefaciens
GCA_013320585.1	JAAMCC000000000		SAMN14165620	17-1008	Agrobacterium tumefaciens
GCA_013318375.1	JAANRZ000000000		SAMN14165501	1D1609	Agrobacterium tumefaciens
GCA_013318385.1	JAALZT000000000		SAMN14165500	1D1460	Agrobacterium tumefaciens
GCA_013318315.1	JAALZR000000000		SAMN14165555	A51	Agrobacterium tumefaciens
GCA_013318285.1	JAANRY000000000		SAMN14165510	A6	Agrobacterium tumefaciens
GCA_013318235.1	JAALZO000000000		SAMN14165452	AF52/95	Agrobacterium tumefaciens
GCA_013318215.1	JAALZN000000000		SAMN14165445	AF82/95	Agrobacterium tumefaciens
GCA_013318185.1	JAALZM000000000		SAMN14165503	ATCC 15955	Agrobacterium tumefaciens
GCA_013318175.1	JAALZL000000000		SAMN14165498	B6806	Agrobacterium tumefaciens
GCA_013318155.1	JAALZK000000000		SAMN14165473	CG53/95	Agrobacterium tumefaciens
GCA_013318115.1	JAALZI000000000		SAMN14165477	Di1519	Agrobacterium tumefaciens
GCA_013318065.1	JAALZG000000000		SAMN14165454	G 8.3	Agrobacterium tumefaciens
GCA_013318025.1	JAALZE000000000		SAMN14165539	G9/79	Agrobacterium tumefaciens
GCA_013317995.1	JAALZD000000000		SAMN14165511	GC1A3	Agrobacterium tumefaciens
GCA_013317925.1	JAALZB000000000		SAMN14165475	IL15	Agrobacterium tumefaciens
GCA_013317915.1	JAALYZ000000000		SAMN14165484	J2/75	Agrobacterium tumefaciens
GCA_013317895.1	JAALYY000000000		SAMN14165476	J3/75	Agrobacterium tumefaciens
GCA_013317845.1	JAALYX000000000		SAMN14165542	K196/80	Agrobacterium tumefaciens
GCA_013317835.1	JAALYV000000000		SAMN14165558	K599	Agrobacterium tumefaciens
GCA_013317815.1	JAALYU000000000		SAMN14165462	LMG 232	Agrobacterium tumefaciens
GCA_013317755.1	JAALYQ000000000		SAMN14165544	M56 /79	Agrobacterium tumefaciens
GCA_013317685.1	JAALYP000000000		SAMN14165560	NCPPB 2655	Agrobacterium tumefaciens
GCA_013319235.1	JAAMBK000000000		SAMN14165579	17-1474cii	Agrobacterium tumefaciens
GCA_013319245.1	JAAMBM000000000		SAMN14165577	17-1474bii	Agrobacterium tumefaciens
GCA_013319225.1	JAAMBL000000000		SAMN14165578	17-1474ci	Agrobacterium tumefaciens
GCA_013319215.1	JAAMBJ000000000		SAMN14165580	17-1474di	Agrobacterium tumefaciens
GCA_013319165.1	JAAMBH000000000		SAMN14165582	17-1474ei	Agrobacterium tumefaciens
GCA_013319155.1	JAAMBI000000000		SAMN14165581	17-1474dii	Agrobacterium tumefaciens
GCA_013319125.1	JAAMBF000000000		SAMN14165584	17-1802-1b	Agrobacterium tumefaciens
GCA_013319145.1	JAAMBG000000000		SAMN14165583	17-1802-1a	Agrobacterium tumefaciens
GCA_013319115.1	JAAMBE000000000		SAMN14165585	17-1803-1b	Agrobacterium tumefaciens
GCA_013319085.1	JAAMBB000000000		SAMN14165623	17-1850-1d	Agrobacterium tumefaciens
GCA_013319065.1	JAAMBD000000000		SAMN14165586	17-1804-1a	Agrobacterium tumefaciens
GCA_013319045.1	JAAMBC000000000		SAMN14165622	17-1850-1cii	Agrobacterium tumefaciens
GCA_013319035.1	JAAMBA000000000		SAMN14165624	17-1850B-1a	Agrobacterium tumefaciens
GCA_013319015.1	JAAMAZ000000000		SAMN14165625	17-1850B-1b	Agrobacterium tumefaciens
GCA_013318975.1	JAAMAY000000000		SAMN14165587	17-1853-1a	Agrobacterium tumefaciens
GCA_013318955.1	JAAMAW000000000		SAMN14165589	17-1853-1c	Agrobacterium tumefaciens
GCA_013318965.1	JAAMAX000000000		SAMN14165588	17-1853-1b	Agrobacterium tumefaciens
GCA_013318935.1	JAAMAV000000000		SAMN14165592	17-642-1b	Agrobacterium tumefaciens
GCA_013318915.1	JAAMAU000000000		SAMN14165593	17-642-2b	Agrobacterium tumefaciens
GCA_013318895.1	JAAMAT000000000		SAMN14165605	17-712-1iii	Agrobacterium tumefaciens
GCA_013318875.1	JAAMAS000000000		SAMN14165606	17-712-1iv_(a)	Agrobacterium tumefaciens
GCA_013318835.1	JAAMAR000000000		SAMN14165607	17-712-1iv_(b)	Agrobacterium tumefaciens
GCA_013318845.1	JAAMAQ000000000		SAMN14165608	17-712-1iv_(c)	Agrobacterium tumefaciens
GCA_013318815.1	JAAMAP000000000		SAMN14165609	17-712-1iv_(d)	Agrobacterium tumefaciens
GCA_013318795.1	JAAMAM000000000		SAMN14165612	17-712a-1ii	Agrobacterium tumefaciens
GCA_013318765.1	JAAMAN000000000		SAMN14165611	17-712-1iv_(f)	Agrobacterium tumefaciens
GCA_013318745.1	JAAMAK000000000		SAMN14165614	17-712c-1ii	Agrobacterium tumefaciens
GCA_013318725.1	JAAMAJ000000000		SAMN14165615	17-712d-1ii	Agrobacterium tumefaciens
GCA_013318715.1	JAAMAI000000000		SAMN14165616	17-712e-1ii	Agrobacterium tumefaciens
GCA_013318695.1	JAAMAG000000000		SAMN14165618	17-712h-1ii	Agrobacterium tumefaciens
GCA_013318675.1	JAAMAH000000000		SAMN14165617	17-712g-1ii	Agrobacterium tumefaciens
GCA_013318655.1	JAAMAF000000000		SAMN14165594	17-713-1ia	Agrobacterium tumefaciens
GCA_013318625.1	JAAMAE000000000		SAMN14165595	17-713-1ib	Agrobacterium tumefaciens
GCA_013318615.1	JAAMAC000000000		SAMN14165597	17-713-1id	Agrobacterium tumefaciens
GCA_013318585.1	JAAMAD000000000		SAMN14165596	17-713-1ic	Agrobacterium tumefaciens
GCA_013318575.1	JAAMAB000000000		SAMN14165598	17-713-1ie	Agrobacterium tumefaciens
GCA_013318555.1	JAAMAA000000000		SAMN14165599	17-713-1if	Agrobacterium tumefaciens
GCA_013318515.1	JAALZW000000000		SAMN14165603	17-713-lii	Agrobacterium tumefaciens
GCA_013318505.1	JAALZZ000000000		SAMN14165600	17-713-1ig	Agrobacterium tumefaciens
GCA_013318495.1	JAALZX000000000		SAMN14165601	17-713-1iv	Agrobacterium tumefaciens
GCA_013318475.1	JAALZY000000000		SAMN14165604	17-713-1iii	Agrobacterium tumefaciens
GCA_013318455.1	JAALZV000000000		SAMN14165602	17-713-lik	Agrobacterium tumefaciens
GCA_013318425.1	JAALZU000000000		SAMN14165499	1D1108	Agrobacterium tumefaciens
GCA_013320545.1	JAAMCA000000000		SAMN14165563	17-1344b	Agrobacterium tumefaciens
GCA_013320515.1	JAAMBY000000000		SAMN14165567	17-1345-1b	Agrobacterium tumefaciens
GCA_013320495.1	JAAMBZ000000000		SAMN14165566	17-1345-1a	Agrobacterium tumefaciens
GCA_013320465.1	JAAMBX000000000		SAMN14165568	17-1346-1b	Agrobacterium tumefaciens
GCA_013320455.1	JAAMBW000000000		SAMN14165564	17-1347a	Agrobacterium tumefaciens
GCA_013320435.1	JAAMBV000000000		SAMN14165565	17-1347b	Agrobacterium tumefaciens
GCA_013320385.1	JAAMBU000000000		SAMN14165569	17-1474-1a	Agrobacterium tumefaciens
GCA_013320405.1	JAAMBS000000000		SAMN14165571	17-1474-1c	Agrobacterium tumefaciens
GCA_013320375.1	JAAMBT000000000		SAMN14165570	17-1474-1b	Agrobacterium tumefaciens
GCA_013320335.1	JAAMBQ000000000		SAMN14165573	17-1474-1e	Agrobacterium tumefaciens
GCA_013320345.1	JAAMBR000000000		SAMN14165572	17-1474-1d	Agrobacterium tumefaciens
GCA_013320295.1	JAAMBO000000000		SAMN14165575	17-1474aii	Agrobacterium tumefaciens
GCA_013320305.1	JAAMBP000000000		SAMN14165574	17-1474ai	Agrobacterium tumefaciens
GCA_013320275.1	JAAMAO000000000		SAMN14165610	17-712-1iv_(e)	Agrobacterium tumefaciens
GCA_013320245.1	JAAMBN000000000		SAMN14165576	17-1474bi	Agrobacterium tumefaciens
GCA_013320235.1	JAAMAL000000000		SAMN14165613	17-712b-1ii	Agrobacterium tumefaciens
GCA_013305205.1	JAAKZU000000000		SAMN14177183	17-1474eii	Agrobacterium tumefaciens
GCA_017584185.1		7	SAMN14165627	Q15/94	Agrobacterium tumefaciens
GCA_013317955.2		7	SAMN14165460	IL30	Agrobacterium tumefaciens
GCA_013317715.2		4	SAMN14165428	LMG 305	Agrobacterium tumefaciens
GCA_013318255.2		4	SAMN14165457	AF1/95	Agrobacterium tumefaciens
GCA_013317965.2		5	SAMN14165523	H25/79	Agrobacterium tumefaciens
GCA_013317615.2		3	SAMN14165531	O54/95	Agrobacterium tumefaciens
GCA_013337045.2		5	SAMN14165442	T60/94	Agrobacterium vitis
GCA_013317475.1	JAALYF000000000		SAMN14165430	BM37/95	Agrobacterium vitis
GCA_013317445.1	JAALYD000000000		SAMN14165505	CG678	Agrobacterium vitis
GCA_013317435.1	JAALYG000000000		SAMN14165468	AV25/95	Agrobacterium vitis
GCA_013317415.1	JAALYE000000000		SAMN14165504	CG412	Agrobacterium vitis
GCA_013317425.1	JAALYC000000000		SAMN14165506	CG78	Agrobacterium vitis
GCA_013317345.1	JAALXZ000000000		SAMN14165455	T267/94	Agrobacterium vitis
GCA_013317315.1	JAALYB000000000		SAMN14165507	F2/5	Agrobacterium vitis
GCA_013317355.1	JAALXX000000000		SAMN14165459	T393/94	Agrobacterium vitis
GCA_013317325.1	JAALYA000000000		SAMN14165436	P86/93	Agrobacterium vitis
GCA_013317335.1	JAALXY000000000		SAMN14165437	T268/95	Agrobacterium vitis
GCA_013317215.1	JAALXV000000000		SAMN14165463	V80/94	Allorhizobium ampelinum
GCA_013317225.1	JAALXU000000000		SAMN14165440	AL 9.2.2	Neorhizobium sp. AL 9.2.2
GCA_013322055.1	JAAMOT000000000		SAMN14165481	AF27/95	Rhizobium lusitanum
GCA_013322065.1	JAAMET000000000		SAMN14165448	AL. 21.2	Rhizobium rhizogenes
GCA_013322025.1	JAAMEQ000000000		SAMN14165549	AR13K/71	Rhizobium rhizogenes
GCA_013321975.1	JAAMER000000000		SAMN14165519	AQ11/95	Rhizobium rhizogenes
GCA_013322015.1	JAAMES000000000		SAMN14165520	AP82/95	Rhizobium rhizogenes
GCA_013321985.1	JAAMEP000000000		SAMN14165528	AS10/95	Rhizobium rhizogenes
GCA_013321955.1	JAAMEO000000000		SAMN14165497	ATCC 15834	Rhizobium rhizogenes
GCA_013321935.1	JAAMEN000000000		SAMN14165535	B1/74	Rhizobium rhizogenes
GCA_013321905.1	JAAMEL000000000		SAMN14165536	B4/73	Rhizobium rhizogenes
GCA_013321855.1	JAAMEJ000000000		SAMN14165495	C16/80	Rhizobium rhizogenes
GCA_013321875.1	JAAMEK000000000		SAMN14165547	B49C/83	Rhizobium rhizogenes
GCA_013321865.1	JAAMEM000000000		SAMN14165526	B147/94	Rhizobium rhizogenes
GCA_013321835.1	JAAMEI000000000		SAMN14165492	CA84/95	Rhizobium rhizogenes
GCA_013321805.1	JAAMEH000000000		SAMN14165425	CG101/95	Rhizobium rhizogenes
GCA_013321785.1	JAAMEG000000000		SAMN14165470	CM65/95	Rhizobium rhizogenes
GCA_013321775.1	JAAMEF000000000		SAMN14165429	CM79/95	Rhizobium rhizogenes
GCA_013321745.1	JAAMEC000000000		SAMN14165439	D1/76	Rhizobium rhizogenes
GCA_013321735.1	JAAMEE000000000		SAMN14165490	CM80/95	Rhizobium rhizogenes
GCA_013321715.1	JAAMEB000000000		SAMN14165450	D1/94	Rhizobium rhizogenes
GCA_013321695.1	JAAMED000000000		SAMN14165479	CP182/95	Rhizobium rhizogenes
GCA_013321665.1	JAAMEA000000000		SAMN14165451	D100/85	Rhizobium rhizogenes
GCA_013321655.1	JAAMDZ000000000		SAMN14165438	D108/85	Rhizobium rhizogenes
GCA_013321635.1	JAAMDW000000000		SAMN14165474	Di1411	Rhizobium rhizogenes
GCA_013321615.1	JAAMDX000000000		SAMN14165447	D2/76	Rhizobium rhizogenes
GCA_013321575.1	JAAMDV000000000		SAMN14165426	Di1462	Rhizobium rhizogenes
GCA_013321565.1	JAAMDY000000000		SAMN14165548	D10b/87	Rhizobium rhizogenes
GCA_013321555.1	JAAMDG000000000		SAMN14165524	P23/94	Rhizobium rhizogenes
GCA_013321505.1	JAAMDA000000000		SAMN14165471	RO 11.4	Rhizobium rhizogenes
GCA_013321495.1	JAAMDT000000000		SAMN14165424	H16/79	Rhizobium rhizogenes
GCA_013321485.1	JAAMDR000000000		SAMN14165431	J10B/93	Rhizobium rhizogenes
GCA_013321475.1	JAAMDU000000000		SAMN14165461	G 10.5	Rhizobium rhizogenes
GCA_013321455.1	JAAMDS000000000		SAMN14165540	I2/75	Rhizobium rhizogenes
GCA_013321425.1	JAAMDO000000000		SAMN14165541	K6/73	Rhizobium rhizogenes
GCA_013321415.1	JAAMDQ000000000		SAMN14165514	J5a/93	Rhizobium rhizogenes
GCA_013321375.1	JAAMDP000000000		SAMN14165512	K27	Rhizobium rhizogenes
GCA_013321355.1	JAAMDN000000000		SAMN14165533	K95/95	Rhizobium rhizogenes
GCA_013321365.1	JAAMDM000000000		SAMN14165456	L20/94	Rhizobium rhizogenes
GCA_013321315.1	JAAMDK000000000		SAMN14165543	M2/73	Rhizobium rhizogenes
GCA_013321305.1	JAAMDL000000000		SAMN14165444	L29/94	Rhizobium rhizogenes
GCA_013321295.1	JAAMDJ000000000		SAMN14165433	N64/94	Rhizobium rhizogenes
GCA_013321275.1	JAAMDH000000000		SAMN14165545	P1/75	Rhizobium rhizogenes
GCA_013321255.1	JAAMDI000000000		SAMN14165559	NCIB 8196	Rhizobium rhizogenes
GCA_013321225.1	JAAMDF000000000		SAMN14165435	PVM 1.5	Rhizobium rhizogenes
GCA_013321215.1	JAAMDD000000000		SAMN14165449	R 1.1	Rhizobium rhizogenes
GCA_013321185.1	JAAMDC000000000		SAMN14165432	R 10.1	Rhizobium rhizogenes
GCA_013321175.1	JAAMDE000000000		SAMN14165441	PVM 10.5	Rhizobium rhizogenes
GCA_013321145.1	JAAMCZ000000000		SAMN14165466	RO 2.2	Rhizobium rhizogenes
GCA_013321135.1	JAAMDB000000000		SAMN14165446	RO 10.5	Rhizobium rhizogenes
GCA_013321105.1	JAAMCY000000000		SAMN14165493	S32/96	Rhizobium rhizogenes
GCA_013321095.1	JAAMCX000000000		SAMN14165487	T155/95	Rhizobium rhizogenes
GCA_013321075.1	JAAMCW000000000		SAMN14165522	T5/73	Rhizobium rhizogenes
GCA_013321035.1	JAAMCT000000000		SAMN14165458	W 1.4	Rhizobium rhizogenes
GCA_013321045.1	JAAMCS000000000		SAMN14165532	X1/95	Rhizobium rhizogenes
GCA_013321005.1	JAAMCV000000000		SAMN14165443	U167/95	Rhizobium rhizogenes
GCA_013320995.1	JAAMCU000000000		SAMN14165453	W 1.1	Rhizobium rhizogenes
GCA_013320965.1	JAAMCR000000000		SAMN14165521	Y79/96	Rhizobium rhizogenes
GCA_013320955.1	JAAMCQ000000000		SAMN14165518	Z4/95	Rhizobium rhizogenes
GCA_013322155.1	JAAMEX000000000		SAMN14165427	A 6.4	Rhizobium rhizogenes
GCA_013322175.1	JAAMEY000000000		SAMN14165434	A 13.1	Rhizobium rhizogenes
GCA_013322165.1	JAAMFA000000000		SAMN14165590	17-2069-2b	Rhizobium rhizogenes
GCA_013322135.1	JAAMEW000000000		SAMN14165534	A1/90	Rhizobium rhizogenes
GCA_013322075.1	JAAMEV000000000		SAMN14165422	A4	Rhizobium rhizogenes
GCA_013322085.1	JAAMEU000000000		SAMN14165486	AF44/96	Rhizobium rhizogenes
GCA_013322215.1	JAAMEZ000000000		SAMN14165591	17-2069-2c	Rhizobium rhizogenes
GCA_017584205.1		3	SAMN14165628	CA75/95	Rhizobium rhizogenes
GCA_013320815.1	JAAMCM000000000		SAMN14165529	Di1472	Rhizobium skierniewicense

SRA Data Details

Parameter	Value
Data volume, Gbases	309
Data volume, Tbytes	0.16

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Agrobacterium

Agrobacterium sp. Genome sequencing and assembly

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