Psychrobacter growth screen and comparative genomi... (ID 674216) - BioProject

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Accession: PRJEB40380 ID: 674216

Psychrobacter growth screen and comparative genomics

Psychrophilic species of the genus Psychrobacter are likely descendants of pathobionts

We measured growth under 24 different conditions for 85 accessions of Psychrobacter in tandem with whole genome sequencing and animal studies. More...

Accession	PRJEB40380
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 3-Nov-2020 MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5304
WGS master	84
Genomic DNA	1
SRA Experiments	405
Other datasets
BioSample	205
Assembly	85

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
84
85

Assembly	WGS	Chrs	BioSample	Taxonomy
GCA_904846035.1	CAJGYT000000000		SAMEA7339708	Psychrobacter aestuarii
GCA_904845935.1	CAJGZC000000000		SAMEA7339709	Psychrobacter alimentarius
GCA_904845975.1	CAJGYQ000000000		SAMEA7339710	Psychrobacter alimentarius
GCA_904845905.1	CAJGYW000000000		SAMEA7339711	Psychrobacter aquaticus
GCA_904845885.1	CAJGZF000000000		SAMEA7339712	Psychrobacter aquimaris
GCA_904846025.1	CAJGZE000000000		SAMEA7339713	Psychrobacter arcticus
GCA_904848165.1		1	SAMEA7339714	Psychrobacter arenosus
GCA_904845945.1	CAJGYU000000000		SAMEA7339715	Psychrobacter celer
GCA_904845955.1	CAJGYX000000000		SAMEA7339717	Psychrobacter cibarius
GCA_904845965.1	CAJGZB000000000		SAMEA7339716	Psychrobacter cibarius
GCA_904846055.1	CAJGYV000000000		SAMEA7339718	Psychrobacter ciconiae
GCA_904845985.1	CAJGYZ000000000		SAMEA7339719	Psychrobacter cryohalolentis
GCA_904846005.1	CAJGYS000000000		SAMEA7339721	Psychrobacter faecalis
GCA_904845915.1	CAJGZG000000000		SAMEA7339720	Psychrobacter faecalis
GCA_904845995.1	CAJGYP000000000		SAMEA7339722	Psychrobacter fjordensis
GCA_904846015.1	CAJGZD000000000		SAMEA7339723	Psychrobacter fozii
GCA_904845925.1	CAJGYY000000000		SAMEA7339724	Psychrobacter frigidicola
GCA_904846045.1	CAJGZA000000000		SAMEA7339725	Psychrobacter frigidicola
GCA_904846155.1	CAJGZP000000000		SAMEA7339726	Psychrobacter fulvigenes
GCA_904846105.1	CAJGZO000000000		SAMEA7339728	Psychrobacter glaciei
GCA_904846075.1	CAJGZH000000000		SAMEA7339729	Psychrobacter glacincola
GCA_904846215.1	CAJGZK000000000		SAMEA7339730	Psychrobacter glacincola
GCA_904846225.1	CAJGZJ000000000		SAMEA7339744	Psychrobacter immobilis
GCA_904846205.1	CAJGZY000000000		SAMEA7339743	Psychrobacter immobilis
GCA_904846125.1	CAJGZX000000000		SAMEA7339740	Psychrobacter immobilis
GCA_904846195.1	CAJGZS000000000		SAMEA7339734	Psychrobacter immobilis
GCA_904846085.1	CAJGZR000000000		SAMEA7339733	Psychrobacter immobilis
GCA_904846285.1	CAJHAD000000000		SAMEA7339751	Psychrobacter immobilis
GCA_904846275.1	CAJHAC000000000		SAMEA7339749	Psychrobacter immobilis
GCA_904846245.1	CAJHAB000000000		SAMEA7339747	Psychrobacter immobilis
GCA_904846265.1	CAJHAA000000000		SAMEA7339748	Psychrobacter immobilis
GCA_904846255.1	CAJGZZ000000000		SAMEA7339746	Psychrobacter immobilis
GCA_904846235.1	CAJGZN000000000		SAMEA7339745	Psychrobacter immobilis
GCA_904846095.1	CAJGZW000000000		SAMEA7339739	Psychrobacter immobilis
GCA_904846135.1	CAJGZU000000000		SAMEA7339736	Psychrobacter immobilis
GCA_904846145.1	CAJGZL000000000		SAMEA7339732	Psychrobacter immobilis
GCA_904846185.1	CAJGZQ000000000		SAMEA7339735	Psychrobacter immobilis
GCA_904846115.1	CAJGZT000000000		SAMEA7339731	Psychrobacter immobilis
GCA_904846065.1	CAJGZV000000000		SAMEA7339742	Psychrobacter immobilis
GCA_904846175.1	CAJGZM000000000		SAMEA7339741	Psychrobacter immobilis
GCA_904846165.1	CAJGZI000000000		SAMEA7339737	Psychrobacter immobilis
GCA_904846315.1	CAJHAF000000000		SAMEA7339752	Psychrobacter jeotgali
GCA_904846335.1	CAJHAH000000000		SAMEA7339753	Psychrobacter luti
GCA_904846305.1	CAJHAE000000000		SAMEA7339754	Psychrobacter lutiphocae
GCA_904846295.1	CAJHAG000000000		SAMEA7339756	Psychrobacter maritimus
GCA_904846345.1	CAJHAJ000000000		SAMEA7339757	Psychrobacter maritimus
GCA_904846535.1	CAJHBC000000000		SAMEA7339778	Psychrobacter muriicola 2pS
GCA_904846355.1	CAJHAK000000000		SAMEA7339758	Psychrobacter namhaensis
GCA_904846365.1	CAJHAL000000000		SAMEA7339759	Psychrobacter nivimaris
GCA_904846385.1	CAJHAN000000000		SAMEA7339762	Psychrobacter okhotskensis
GCA_904846405.1	CAJHAP000000000		SAMEA7339763	Psychrobacter okhotskensis
GCA_904846395.1	CAJHAO000000000		SAMEA7339764	Psychrobacter pacificensis
GCA_904846375.1	CAJHAM000000000		SAMEA7339760	Psychrobacter pacificensis
GCA_904846425.1	CAJHAQ000000000		SAMEA7339765	Psychrobacter phenylpyruvicus
GCA_904846415.1	CAJHAR000000000		SAMEA7339766	Psychrobacter piscatorii
GCA_904846455.1	CAJHAS000000000		SAMEA7339769	Psychrobacter proteolyticus
GCA_904846325.1	CAJHAI000000000		SAMEA7339755	Psychrobacter proteolyticus
GCA_904845895.1	CAJGYR000000000		SAMEA7339707	Psychrobacter proteolyticus
GCA_904846465.1	CAJHAT000000000		SAMEA7339771	Psychrobacter pulmonis
GCA_904846435.1	CAJHAU000000000		SAMEA7339770	Psychrobacter pulmonis
GCA_904846505.1	CAJHBA000000000		SAMEA7339776	Psychrobacter sanguinis
GCA_904846515.1	CAJHBB000000000		SAMEA7339774	Psychrobacter sanguinis
GCA_904846495.1	CAJHAY000000000		SAMEA7339773	Psychrobacter sanguinis
GCA_904846485.1	CAJHAX000000000		SAMEA7339775	Psychrobacter sanguinis
GCA_904846525.1	CAJHAZ000000000		SAMEA7339777	Psychrobacter sp. 1044
GCA_904846545.1	CAJHBD000000000		SAMEA7339779	Psychrobacter sp. 72-O-c
GCA_904846605.1	CAJHBI000000000		SAMEA7339786	Psychrobacter sp. 72-O-c
GCA_904846565.1	CAJHBF000000000		SAMEA7339780	Psychrobacter sp. CMS30
GCA_904846555.1	CAJHBE000000000		SAMEA7339782	Psychrobacter sp. DD43
GCA_904846585.1	CAJHBH000000000		SAMEA7339783	Psychrobacter sp. H7-1
GCA_904846575.1	CAJHBG000000000		SAMEA7339784	Psychrobacter sp. H8-1
GCA_904846595.1	CAJHBJ000000000		SAMEA7339785	Psychrobacter sp. HII-4
GCA_904846625.1	CAJHBL000000000		SAMEA7339787	Psychrobacter sp. JCM 18900
GCA_904846615.1	CAJHBK000000000		SAMEA7339789	Psychrobacter sp. JCM 18902
GCA_904846635.1	CAJHBM000000000		SAMEA7339790	Psychrobacter sp. JCM 18903
GCA_904846475.1	CAJHAV000000000		SAMEA7339768	Psychrobacter sp. LFX-11D
GCA_904846655.1	CAJHBN000000000		SAMEA7339791	Psychrobacter sp. NC44
GCA_904846645.1	CAJHBO000000000		SAMEA7339792	Psychrobacter sp. Pi2-1
GCA_904846665.1	CAJHBP000000000		SAMEA7339793	Psychrobacter sp. Pi2-51
GCA_904846705.1	CAJHBS000000000		SAMEA7339794	Psychrobacter sp. Pi2-52
GCA_904846685.1	CAJHBQ000000000		SAMEA7339795	Psychrobacter submarinus
GCA_904846445.1	CAJHAW000000000		SAMEA7339772	Psychrobacter submarinus
GCA_904846695.1	CAJHBR000000000		SAMEA7339797	Psychrobacter urativorans
GCA_904846675.1	CAJHBT000000000		SAMEA7339796	Psychrobacter urativorans
GCA_904846715.1	CAJHBU000000000		SAMEA7339798	Psychrobacter vallis

SRA Data Details

Parameter	Value
Data volume, Gbases	70
Data volume, Mbytes	33968

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Psychrobacter growth screen and comparative genomics

Psychrophilic species of the genus Psychrobacter are likely descendants of pathobionts

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