bioreactor metagenome (ID 758578) - BioProject

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Accession: PRJNA758578 ID: 758578

bioreactor metagenome

Unraveling nitrogen, sulfur and carbon metabolic pathways and microbial community transcriptional responses to substrate deprivation and toxicity stresses in a bioreactor mimicking anoxic brackish coastal sediment conditions

Here we make publicly available a time-series of metagenomic and metatranscriptomic sequencing datasets from a bioreactor during regular operation, during an ammonium deprivation experiment, and during a sulfide and nitric oxide stress experiment. More...

Accession	PRJNA758578
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	bioreactor metagenome[Taxonomy ID: 1076179] unclassified sequences; metagenomes; ecological metagenomes; bioreactor metagenome
Submission	Registration date: 8-Sep-2021 Radboud University Nijmegen
Related Resources	Previous description of the bioreactor enrichment culture
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	66
SRA Experiments	27
Other datasets
BioSample	93
Assembly	66

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

66
66

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_019912245.1	JAIOIP000000000	SAMN21031769	MAG_33	Alphaproteobacteria bacterium
GCA_019913825.1	JAIOHJ000000000	SAMN21031737	MAG_01	Alphaproteobacteria bacterium
GCA_019913785.1	JAIOHK000000000	SAMN21031738	MAG_02	Altibacter sp.
GCA_019913005.1	JAIOHL000000000	SAMN21031739	MAG_03	Anaerolineae bacterium
GCA_019912985.1	JAIOHN000000000	SAMN21031741	MAG_05	Anaerolineae bacterium
GCA_019912965.1	JAIOHM000000000	SAMN21031740	MAG_04	Anaerolineae bacterium
GCA_019912945.1	JAIOHP000000000	SAMN21031743	MAG_07	Anaerolineae bacterium
GCA_019912915.1	JAIOHQ000000000	SAMN21031744	MAG_08	Anaerolineae bacterium
GCA_019912905.1	JAIOHO000000000	SAMN21031742	MAG_06	Anaerolineae bacterium
GCA_019912815.1	JAIOHR000000000	SAMN21031745	MAG_09	Anaerolineae bacterium
GCA_019912725.1	JAIOHX000000000	SAMN21031751	MAG_15	Bacteroidales bacterium
GCA_019912625.1	JAIOHY000000000	SAMN21031752	MAG_16	Bauldia sp.
GCA_019912805.1	JAIOHZ000000000	SAMN21031753	MAG_17	Burkholderiales bacterium
GCA_019912005.1	JAIOIN000000000	SAMN21031767	MAG_31	Candidatus Kapaibacterium sp.
GCA_019912215.1	JAIOIO000000000	SAMN21031768	MAG_32	Candidatus Kuenenia stuttgartiensis
GCA_019912155.1	JAIOIS000000000	SAMN21031772	MAG_36	Candidatus Methanoperedens nitroreducens
GCA_019912285.1	JAIOIT000000000	SAMN21031773	MAG_37	Candidatus Methylomirabilis lanthanidiphila
GCA_019912425.1	JAIOIU000000000	SAMN21031774	MAG 38	Candidatus Methylomirabilis tolerans
GCA_019912415.1	JAIOIV000000000	SAMN21031775	MAG_39	Candidatus Nitrobium versatile
GCA_019912125.1	JAIOIX000000000	SAMN21031777	MAG_41	Candidatus Obscuribacterales bacterium
GCA_019912205.1	JAIOIY000000000	SAMN21031778	MAG_42	Candidatus Omnitrophota bacterium
GCA_019911885.1	JAIOJL000000000	SAMN21031791	MAG_55	Candidatus Scalindua rubra
GCA_019912745.1	JAIOIA000000000	SAMN21031754	MAG_18	Comamonas sp.
GCA_019912785.1	JAIOIB000000000	SAMN21031755	MAG_19	Cutibacterium acnes
GCA_019912735.1	JAIOIC000000000	SAMN21031756	MAG_20	Cyclobacteriaceae bacterium
GCA_019912665.1	JAIOIE000000000	SAMN21031758	MAG_22	Deltaproteobacteria bacterium
GCA_019912565.1	JAIOID000000000	SAMN21031757	MAG_21	Deltaproteobacteria bacterium
GCA_019912645.1	JAIOIF000000000	SAMN21031759	MAG_23	Dokdonella sp.
GCA_019912465.1	JAIOIG000000000	SAMN21031760	MAG_24	Fimbriimonadaceae bacterium
GCA_019912395.1	JAIOIH000000000	SAMN21031761	MAG_25	Flavobacteriales bacterium
GCA_019911805.1	JAIOJV000000000	SAMN21031801	MAG_65	Gammaproteobacteria bacterium
GCA_019912605.1	JAIOHS000000000	SAMN21031746	MAG_10	Hyphomicrobiales bacterium
GCA_019912585.1	JAIOIJ000000000	SAMN21031763	MAG_27	Hyphomicrobium sp.
GCA_019912545.1	JAIOIK000000000	SAMN21031764	MAG_28	Ignavibacteria bacterium
GCA_019912515.1	JAIOIL000000000	SAMN21031765	MAG_29	Ignavibacteriaceae bacterium
GCA_019912505.1	JAIOIM000000000	SAMN21031766	MAG_30	Ignavibacteriaceae bacterium
GCA_019912685.1	JAIOII000000000	SAMN21031762	MAG_26	Kofleriaceae bacterium
GCA_019912485.1	JAIOIQ000000000	SAMN21031770	MAG_34	Melioribacteraceae bacterium
GCA_019912365.1	JAIOIR000000000	SAMN21031771	MAG_35	Melioribacteraceae bacterium
GCA_019912385.1	JAIOIW000000000	SAMN21031776	MAG_40	Notoacmeibacter sp.
GCA_019911965.1	JAIOJF000000000	SAMN21031785	MAG_49	Paracoccaceae bacterium
GCA_019912145.1	JAIOIZ000000000	SAMN21031779	MAG_43	Phycisphaerales bacterium
GCA_019912305.1	JAIOJB000000000	SAMN21031781	MAG_45	Planctomycetota bacterium
GCA_019912315.1	JAIOJA000000000	SAMN21031780	MAG_44	Planctomycetota bacterium
GCA_019912265.1	JAIOJD000000000	SAMN21031783	MAG_47	Pseudorhodoplanes sp.
GCA_019912345.1	JAIOJC000000000	SAMN21031782	MAG_46	Pseudorhodoplanes sp.
GCA_019912015.1	JAIOJE000000000	SAMN21031784	MAG_48	Rhodanobacter sp.
GCA_019912105.1	JAIOJH000000000	SAMN21031787	MAG_51	Rhodocyclaceae bacterium
GCA_019912075.1	JAIOJI000000000	SAMN21031788	MAG_52	Rhodocyclaceae bacterium
GCA_019912185.1	JAIOJG000000000	SAMN21031786	MAG_50	Rhodocyclaceae bacterium
GCA_019912045.1	JAIOJJ000000000	SAMN21031789	MAG_53	Roseovarius sp.
GCA_019912065.1	JAIOJK000000000	SAMN21031790	MAG_54	Sandaracinaceae bacterium
GCA_019911945.1	JAIOJN000000000	SAMN21031793	MAG_57	Sulfuricella denitrificans
GCA_019911785.1	JAIOJM000000000	SAMN21031792	MAG_56	Sulfuricella sp.
GCA_019911985.1	JAIOJO000000000	SAMN21031794	MAG_58	Sulfuricellaceae bacterium
GCA_019911895.1	JAIOJP000000000	SAMN21031795	MAG_59	Taibaiella sp.
GCA_019911795.1	JAIOJS000000000	SAMN21031798	MAG_62	Thermoanaerobaculia bacterium
GCA_019911865.1	JAIOJQ000000000	SAMN21031796	MAG_60	Thermoanaerobaculia bacterium
GCA_019911925.1	JAIOJR000000000	SAMN21031797	MAG_61	Thermoanaerobaculia bacterium
GCA_019911845.1	JAIOJT000000000	SAMN21031799	MAG_63	Thermomonas sp.
GCA_019911765.1	JAIOJU000000000	SAMN21031800	MAG_64	Thiobacillus sp.
GCA_019912705.1	JAIOHT000000000	SAMN21031747	MAG_11	bacterium
GCA_019912845.1	JAIOHU000000000	SAMN21031748	MAG_12	bacterium
GCA_019912885.1	JAIOHV000000000	SAMN21031749	MAG_13	bacterium
GCA_019912865.1	JAIOHW000000000	SAMN21031750	MAG_14	bacterium
GCA_020063645.1	JAIOHI000000000	SAMN21032298	-	bioreactor metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	115
Data volume, Mbytes	40387

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bioreactor metagenome

Unraveling nitrogen, sulfur and carbon metabolic pathways and microbial community transcriptional responses to substrate deprivation and toxicity stresses in a bioreactor mimicking anoxic brackish coastal sediment conditions

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