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Accession: PRJNA735624 ID: 735624

Agelaius phoeniceus isolate:Biobank_ID:100140 (red-winged blackbird)

Agelaius phoeniceus (red-winged blackbird) Genome Sequencing and Assembly

See Genome Information for Agelaius phoeniceus
The red-winged blackbird (family Icteridae), one of the most common songbirds in North America and an icterid with typical nesting behavior, was chosen for this study to serve as an outgroup to the obligate brood parasitic brown-headed cowbird (Molothrus ater).
AccessionPRJNA735624
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismAgelaius phoeniceus[Taxonomy ID: 39638]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius; Agelaius phoeniceus
PublicationsPowell AF et al., "Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: an avian case study.", Mol Phylogenet Evol, 2013 Jan;66(1):69-79
Grants
  • "Comparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic BirdsComparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic Birds" (Grant ID 1754311, National Science Foundation)
  • "Comparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic Birds" (Grant ID 1754397, National Science Foundation)
  • "Comparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic Birds" (Grant ID 1754406, National Science Foundation)
  • "Comparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic Birds" (Grant ID 1754643, National Science Foundation)
  • "Comparative Genomics of Host-specific Adaptation and Life History Evolution in Brood Parasitic Birds" (Grant ID 1940624, National Science Foundation)
SubmissionRegistration date: 5-Nov-2021
Brood Parasitic Bird Genomes Consortium
- University of Missouri
RelevanceEvolution
Locus Tag PrefixKOS77
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)136
WGS master1
SRA Experiments3
Publications
PubMed1
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases92
Data volume, Mbytes56999
Related RefSeq Project
PRJNA942290 : Agelaius phoeniceus (red-winged blackbird)RefSeq BioProject

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