Capsicum annuum cultivar:UCD-10X-F1 (ID 814299) - BioProject

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Accession: PRJNA814299 ID: 814299

Capsicum annuum cultivar:UCD-10X-F1

Capsicum annuum cultivar:UCD-10X-F1 RefSeq Genome sequencing

See Genome Information for Capsicum annuum

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141 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA376668). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA814299
Data Type	RefSeq Genome sequencing
Scope	Monoisolate
Organism	Capsicum annuum[Taxonomy ID: 4072] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum; Capsicum annuum
Publications (total 5) Less...	Hulse-Kemp AM et al., "Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library.", Hortic Res, 2018;5:4 More... Hulse-Kemp AM et al., "Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library.", Hortic Res, 2018;5:4 Jo YD et al., "Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.", Plant Cell Rep, 2011 Feb;30(2):217-29 Mazourek M et al., "A dynamic interface for capsaicinoid systems biology.", Plant Physiol, 2009 Aug;150(4):1806-21 Choi HW et al., "A role for a menthone reductase in resistance against microbial pathogens in plants.", Plant Physiol, 2008 Sep;148(1):383-401 Kim HS et al., "Molecular and functional characterization of CaLEA6, the gene for a hydrophobic LEA protein from Capsicum annuum.", Gene, 2005 Jan 3;344:115-23 Less...
Submission	Registration date: 19-Dec-2017 University of California, Davis
Relevance	Agricultural
Locus Tag Prefix	MNV62

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	151707
Transcript	70495
Protein Sequences	51276
Publications
PubMed	5
PMC	3
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_002878395.1	Chromosome	NPHV00000000	14	SAMN06445824	Capsicum annuum

Related GenBank Project

PRJNA376668 : Capsicum annuum cultivar:UCD-10X-F1 Genome sequencing and assembly

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Capsicum annuum cultivar:UCD-10X-F1

Capsicum annuum cultivar:UCD-10X-F1 RefSeq Genome sequencing

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