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Accession: PRJEB52635 ID: 840722

EMG produced TPA metagenomics assembly of PRJNA728379 data set (Metagenome of pig fecal bacteria).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA728379, and was assembled with metaSPAdes v3. More...
AccessionPRJEB52635
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
SubmissionRegistration date: 20-May-2022
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2928
WGS master186
Publications
PubMed1
PMC1
Other datasets
BioSample186
Assembly186
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
186
186
AssemblyLevelWGSBioSampleTaxonomy
GCA_945638835.1ContigCALZDY000000000SAMEA110322021
Acinetobacter lwoffii
GCA_945610665.1ContigCALYZW000000000SAMEA110321939
Aerococcus urinaeequi
GCA_945639035.1ContigCALZEA000000000SAMEA110322032
Chlamydia suis
GCA_945614095.1ContigCALZAL000000000SAMEA110321945
Escherichia coli
GCA_945630165.1ContigCALZCP000000000SAMEA110322035
Jeotgalibaca dankookensis
GCA_945636515.1ContigCALZCZ000000000SAMEA110322078
Lactobacillus amylovorus
GCA_945638655.1ContigCALZDT000000000SAMEA110322045
Lactobacillus johnsonii
GCA_945638905.1ContigCALZEC000000000SAMEA110322033
Megasphaera elsdenii
GCA_945645595.1ContigCALZFF000000000SAMEA110321972
Methanobrevibacter gottschalkii
GCA_945650115.1ContigCALZFV000000000SAMEA110321985
Methanobrevibacter ruminantium
GCA_945607175.1ContigCALYYY000000000SAMEA110321948
Methanobrevibacter smithii
GCA_945639945.1ContigCALZEM000000000SAMEA110321965
Oceanisphaera avium
GCA_945639145.1ContigCALZED000000000SAMEA110321971
Psychrobacter pasteurii
GCA_945616265.1ContigCALZBD000000000SAMEA110321924
Ruminococcus flavefaciens
GCA_945615915.1ContigCALZBA000000000SAMEA110321941
Turicibacter sanguinis
GCA_945606095.1ContigCALYYS000000000SAMEA110321932
uncultured Acetitomaculum sp.
GCA_945609935.1ContigCALYZP000000000SAMEA110321991
uncultured Alphaproteobacteria bacterium
GCA_945639745.1ContigCALZEK000000000SAMEA110321973
uncultured Bacillaceae bacterium
GCA_945608585.1ContigCALYZG000000000SAMEA110321914
uncultured Bacteroidales bacterium
GCA_945607565.1ContigCALYZD000000000SAMEA110321999
uncultured Bacteroidales bacterium
GCA_945608995.1ContigCALYZM000000000SAMEA110321909
uncultured Bacteroidales bacterium
GCA_945624775.1ContigCALZCG000000000SAMEA110322036
uncultured Bacteroidales bacterium
GCA_945623735.1ContigCALZCB000000000SAMEA110321980
uncultured Bacteroidales bacterium
GCA_945608545.1ContigCALYZH000000000SAMEA110321918
uncultured Bacteroidales bacterium
GCA_945638185.1ContigCALZDN000000000SAMEA110322085
uncultured Bacteroidales bacterium
GCA_945631515.1ContigCALZCS000000000SAMEA110322070
uncultured Bacteroidales bacterium
GCA_945608665.1ContigCALYZJ000000000SAMEA110321920
uncultured Bacteroidales bacterium
GCA_945648405.1ContigCALZFN000000000SAMEA110322073
uncultured Bacteroidales bacterium
GCA_945615335.1ContigCALZAT000000000SAMEA110321907
uncultured Bacteroidales bacterium
GCA_945615645.1ContigCALZAV000000000SAMEA110321993
uncultured Bacteroidales bacterium
GCA_945616435.1ContigCALZBE000000000SAMEA110321912
uncultured Bacteroidales bacterium
GCA_945637335.1ContigCALZDH000000000SAMEA110322079
uncultured Bacteroidales bacterium
GCA_945639285.1ContigCALZEG000000000SAMEA110322022
uncultured Bacteroidales bacterium
GCA_945636785.1ContigCALZDD000000000SAMEA110322030
uncultured Bacteroidales bacterium
GCA_945649915.1ContigCALZFU000000000SAMEA110322047
uncultured Bacteroidales bacterium
GCA_945605935.1ContigCALYYR000000000SAMEA110322010
uncultured Bacteroidales bacterium
GCA_945608555.1ContigCALYZI000000000SAMEA110321910
uncultured Bacteroidales bacterium
GCA_945607915.1ContigCALYZF000000000SAMEA110321916
uncultured Bacteroidales bacterium
GCA_945623555.1ContigCALZCA000000000SAMEA110321974
uncultured Bacteroidales bacterium
GCA_945636545.1ContigCALZDA000000000SAMEA110322077
uncultured Bacteroidales bacterium
GCA_945614715.1ContigCALZAQ000000000SAMEA110321913
uncultured Bacteroidales bacterium
GCA_945638535.1ContigCALZDQ000000000SAMEA110322051
uncultured Bacteroidales bacterium
GCA_945618645.1ContigCALZBH000000000SAMEA110321995
uncultured Bacteroidales bacterium
GCA_945611095.1ContigCALZAA000000000SAMEA110322017
uncultured Bacteroidales bacterium
GCA_945631425.1ContigCALZCQ000000000SAMEA110322069
uncultured Bacteroidales bacterium
GCA_945610395.1ContigCALYZT000000000SAMEA110322016
uncultured Bacteroidales bacterium
GCA_945606275.1ContigCALYYU000000000SAMEA110322012
uncultured Bacteroidales bacterium
GCA_945620555.1ContigCALZBP000000000SAMEA110321981
uncultured Bacteroidales bacterium
GCA_945648435.1ContigCALZFO000000000SAMEA110322088
uncultured Bacteroidales bacterium
GCA_945645955.1ContigCALZFL000000000SAMEA110322080
uncultured Bacteroidales bacterium
GCA_945607605.1ContigCALYZE000000000SAMEA110321921
uncultured Bacteroides sp.
GCA_945646205.1ContigCALZFM000000000SAMEA110322020
uncultured Bacteroides sp.
GCA_945623225.1ContigCALZBZ000000000SAMEA110322007
uncultured Butyrivibrio sp.
GCA_945609415.1ContigCALYZO000000000SAMEA110321957
uncultured Clostridia bacterium
GCA_945613045.1ContigCALZAG000000000SAMEA110321964
uncultured Clostridia bacterium
GCA_945619825.1ContigCALZBL000000000SAMEA110321935
uncultured Clostridia bacterium
GCA_945607665.1ContigCALYZB000000000SAMEA110321926
uncultured Clostridia bacterium
GCA_945641305.1ContigCALZEU000000000SAMEA110321979
uncultured Clostridia bacterium
GCA_945607415.1ContigCALYZA000000000SAMEA110321951
uncultured Clostridia bacterium
GCA_945608855.1ContigCALYZL000000000SAMEA110321931
uncultured Clostridia bacterium
GCA_945637665.1ContigCALZDM000000000SAMEA110322060
uncultured Clostridia bacterium
GCA_945624245.1ContigCALZCE000000000SAMEA110322050
uncultured Clostridia bacterium
GCA_945618845.1ContigCALZBI000000000SAMEA110321936
uncultured Clostridia bacterium
GCA_945614165.1ContigCALZAM000000000SAMEA110322002
uncultured Clostridia bacterium
GCA_945644115.1ContigCALZEY000000000SAMEA110322052
uncultured Clostridia bacterium
GCA_945638575.1ContigCALZDP000000000SAMEA110322062
uncultured Clostridia bacterium
GCA_945639375.1ContigCALZEJ000000000SAMEA110322055
uncultured Clostridia bacterium
GCA_945641235.1ContigCALZES000000000SAMEA110321990
uncultured Clostridia bacterium
GCA_945645125.1ContigCALZFD000000000SAMEA110321986
uncultured Clostridia bacterium
GCA_945614015.1ContigCALZAK000000000SAMEA110321940
uncultured Clostridia bacterium
GCA_945638595.1ContigCALZDR000000000SAMEA110322064
uncultured Clostridia bacterium
GCA_945635805.1ContigCALZCW000000000SAMEA110322054
uncultured Clostridia bacterium
GCA_945644815.1ContigCALZFA000000000SAMEA110321988
uncultured Clostridia bacterium
GCA_945628325.1ContigCALZCM000000000SAMEA110321969
uncultured Clostridia bacterium
GCA_945611605.1ContigCALZAC000000000SAMEA110321923
uncultured Clostridia bacterium
GCA_945615505.1ContigCALZAU000000000SAMEA110321956
uncultured Clostridia bacterium
GCA_945628035.1ContigCALZCK000000000SAMEA110322019
uncultured Clostridia bacterium
GCA_945615945.1ContigCALZAZ000000000SAMEA110321946
uncultured Clostridia bacterium
GCA_945622055.1ContigCALZBV000000000SAMEA110321955
uncultured Clostridia bacterium
GCA_945615925.1ContigCALZAY000000000SAMEA110321943
uncultured Clostridia bacterium
GCA_945621755.1ContigCALZBT000000000SAMEA110321958
uncultured Clostridia bacterium
GCA_945631675.1ContigCALZCT000000000SAMEA110321961
uncultured Clostridia bacterium
GCA_945610795.1ContigCALYZX000000000SAMEA110321937
uncultured Clostridia bacterium
GCA_945622955.1ContigCALZBY000000000SAMEA110322008
uncultured Clostridia bacterium
GCA_945615735.1ContigCALZAW000000000SAMEA110321959
uncultured Clostridium sp.
GCA_945610215.1ContigCALYZR000000000SAMEA110322003
uncultured Clostridium sp.
GCA_945639235.1ContigCALZEH000000000SAMEA110322065
uncultured Clostridium sp.
GCA_945627985.1ContigCALZCJ000000000SAMEA110321968
uncultured Clostridium sp.
GCA_945649885.1ContigCALZFS000000000SAMEA110322058
uncultured Corynebacterium sp.
GCA_945631445.1ContigCALZCR000000000SAMEA110322061
uncultured Corynebacterium sp.
GCA_945641135.1ContigCALZEP000000000SAMEA110322034
uncultured Dialister sp.
GCA_945645795.1ContigCALZFH000000000SAMEA110322029
uncultured Erysipelotrichaceae bacterium
GCA_945648485.1ContigCALZFR000000000SAMEA110322087
uncultured Eubacterium sp.
GCA_945616155.1ContigCALZBB000000000SAMEA110321950
uncultured Fibrobacter sp.
GCA_945606225.1ContigCALYYT000000000SAMEA110322013
uncultured Fibrobacter sp.
GCA_945611005.1ContigCALYZZ000000000SAMEA110322001
uncultured Firmicutes bacterium
GCA_945612235.1ContigCALZAE000000000SAMEA110321953
uncultured Gammaproteobacteria bacterium
GCA_945637515.1ContigCALZDJ000000000SAMEA110322023
uncultured Gammaproteobacteria bacterium
GCA_945641205.1ContigCALZEO000000000SAMEA110321970
uncultured Gammaproteobacteria bacterium
GCA_945608675.1ContigCALYZK000000000SAMEA110321911
uncultured Ignatzschineria sp.
GCA_945639195.1ContigCALZEE000000000SAMEA110322043
uncultured Ignatzschineria sp.
GCA_945619025.1ContigCALZBJ000000000SAMEA110321915
uncultured Ignatzschineria sp.
GCA_945610435.1ContigCALYZU000000000SAMEA110322011
uncultured Lachnospiraceae bacterium
GCA_945644865.1ContigCALZFB000000000SAMEA110321976
uncultured Lachnospiraceae bacterium
GCA_945636655.1ContigCALZDC000000000SAMEA110322067
uncultured Lachnospiraceae bacterium
GCA_945609375.1ContigCALYZN000000000SAMEA110321908
uncultured Lachnospiraceae bacterium
GCA_945609985.1ContigCALYZQ000000000SAMEA110321975
uncultured Lachnospiraceae bacterium
GCA_945614845.1ContigCALZAR000000000SAMEA110321906
uncultured Lachnospiraceae bacterium
GCA_945645385.1ContigCALZFE000000000SAMEA110321966
uncultured Lachnospiraceae bacterium
GCA_945643825.1ContigCALZEZ000000000SAMEA110322057
uncultured Lachnospiraceae bacterium
GCA_945623865.1ContigCALZCD000000000SAMEA110321967
uncultured Lachnospiraceae bacterium
GCA_945641335.1ContigCALZET000000000SAMEA110321994
uncultured Lachnospiraceae bacterium
GCA_945645625.1ContigCALZFI000000000SAMEA110322024
uncultured Lachnospiraceae bacterium
GCA_945621435.1ContigCALZBR000000000SAMEA110321984
uncultured Lachnospiraceae bacterium
GCA_945636165.1ContigCALZCY000000000SAMEA110322063
uncultured Lachnospiraceae bacterium
GCA_945640905.1ContigCALZEN000000000SAMEA110322037
uncultured Lactobacillus sp.
GCA_945620125.1ContigCALZBM000000000SAMEA110321930
uncultured Lactobacillus sp.
GCA_945641355.1ContigCALZEQ000000000SAMEA110321996
uncultured Mediterranea sp.
GCA_945637315.1ContigCALZDG000000000SAMEA110322072
uncultured Mollicutes bacterium
GCA_945610825.1ContigCALYZY000000000SAMEA110322006
uncultured Mollicutes bacterium
GCA_945614315.1ContigCALZAO000000000SAMEA110321938
uncultured Mycoplasmatota bacterium
GCA_945628165.1ContigCALZCL000000000SAMEA110321962
uncultured Mycoplasmatota bacterium
GCA_945607685.1ContigCALYZC000000000SAMEA110322005
uncultured Parabacteroides sp.
GCA_945611775.1ContigCALZAD000000000SAMEA110321929
uncultured Planctomycetaceae bacterium
GCA_945626465.1ContigCALZCI000000000SAMEA110322048
uncultured Porphyromonadaceae bacterium
GCA_945638945.1ContigCALZDZ000000000SAMEA110322028
uncultured Prevotella sp.
GCA_945637645.1ContigCALZDK000000000SAMEA110322049
uncultured Prevotella sp.
GCA_945641125.1ContigCALZER000000000SAMEA110322031
uncultured Prevotella sp.
GCA_945615845.1ContigCALZAX000000000SAMEA110321952
uncultured Prevotella sp.
GCA_945637735.1ContigCALZDL000000000SAMEA110322084
uncultured Prevotella sp.
GCA_945614335.1ContigCALZAP000000000SAMEA110321998
uncultured Prevotella sp.
GCA_945606505.1ContigCALYYW000000000SAMEA110321919
uncultured Prevotella sp.
GCA_945635545.1ContigCALZCV000000000SAMEA110322086
uncultured Prevotella sp.
GCA_945630065.1ContigCALZCO000000000SAMEA110322041
uncultured Prevotella sp.
GCA_945643725.1ContigCALZEV000000000SAMEA110322074
uncultured Prevotella sp.
GCA_945645545.1ContigCALZFG000000000SAMEA110322081
uncultured Prevotella sp.
GCA_945622605.1ContigCALZBW000000000SAMEA110322015
uncultured Prevotella sp.
GCA_945645815.1ContigCALZFK000000000SAMEA110322090
uncultured Prevotella sp.
GCA_945645715.1ContigCALZFJ000000000SAMEA110322027
uncultured Prevotellaceae bacterium
GCA_945638405.1ContigCALZDO000000000SAMEA110322068
uncultured Prevotellaceae bacterium
GCA_945643815.1ContigCALZEX000000000SAMEA110322076
uncultured Prevotellaceae bacterium
GCA_945638645.1ContigCALZDU000000000SAMEA110322066
uncultured Prevotellaceae bacterium
GCA_945607035.1ContigCALYYX000000000SAMEA110321947
uncultured Pseudomonadaceae bacterium
GCA_945616195.1ContigCALZBC000000000SAMEA110321925
uncultured Pseudomonadaceae bacterium
GCA_945615095.1ContigCALZAS000000000SAMEA110321949
uncultured Psychrobacillus sp.
GCA_945643845.1ContigCALZEW000000000SAMEA110322038
uncultured Psychrobacter sp.
GCA_945607165.1ContigCALYYZ000000000SAMEA110321944
uncultured Ruminococcus sp.
GCA_945614185.1ContigCALZAN000000000SAMEA110321933
uncultured Ruminococcus sp.
GCA_945632055.1ContigCALZCU000000000SAMEA110322046
uncultured Ruminococcus sp.
GCA_945624235.1ContigCALZCF000000000SAMEA110322025
uncultured Ruminococcus sp.
GCA_945616705.1ContigCALZBG000000000SAMEA110321982
uncultured Ruminococcus sp.
GCA_945638695.1ContigCALZDV000000000SAMEA110322053
uncultured Ruminococcus sp.
GCA_945637225.1ContigCALZDE000000000SAMEA110322091
uncultured Selenomonadaceae bacterium
GCA_945620165.1ContigCALZBO000000000SAMEA110321928
uncultured Solobacterium sp.
GCA_945620965.1ContigCALZBQ000000000SAMEA110321992
uncultured Spirochaetales bacterium
GCA_945636115.1ContigCALZCX000000000SAMEA110322071
uncultured Streptococcus sp.
GCA_945648455.1ContigCALZFQ000000000SAMEA110322082
uncultured Succinatimonas sp.
GCA_945606365.1ContigCALYYV000000000SAMEA110322014
uncultured Treponema sp.
GCA_945638915.1ContigCALZDX000000000SAMEA110321963
uncultured Treponema sp.
GCA_945611455.1ContigCALZAB000000000SAMEA110321927
uncultured Treponema sp.
GCA_945637295.1ContigCALZDI000000000SAMEA110322059
uncultured Treponema sp.
GCA_945639175.1ContigCALZEF000000000SAMEA110322018
uncultured Treponema sp.
GCA_945639785.1ContigCALZEL000000000SAMEA110321977
uncultured Treponema sp.
GCA_945624755.1ContigCALZCH000000000SAMEA110322039
uncultured Treponema sp.
GCA_945616455.1ContigCALZBF000000000SAMEA110321917
uncultured Treponema sp.
GCA_945613695.1ContigCALZAI000000000SAMEA110321942
uncultured Treponema sp.
GCA_945610475.1ContigCALYZV000000000SAMEA110322000
uncultured Treponema sp.
GCA_945636525.1ContigCALZDB000000000SAMEA110322089
uncultured Treponema sp.
GCA_945628395.1ContigCALZCN000000000SAMEA110321983
uncultured Treponema sp.
GCA_945650035.1ContigCALZFT000000000SAMEA110322056
uncultured Treponema sp.
GCA_945648475.1ContigCALZFP000000000SAMEA110322083
uncultured Veillonellaceae bacterium
GCA_945613785.1ContigCALZAJ000000000SAMEA110321960
uncultured Verrucomicrobiota bacterium
GCA_945622675.1ContigCALZBX000000000SAMEA110322009
uncultured Verrucomicrobiota bacterium
GCA_945613035.1ContigCALZAH000000000SAMEA110321954
uncultured Verrucomicrobiota bacterium
GCA_945621885.1ContigCALZBU000000000SAMEA110321987
uncultured bacterium
GCA_945639275.1ContigCALZEI000000000SAMEA110322040
uncultured bacterium
GCA_945619165.1ContigCALZBK000000000SAMEA110321934
uncultured bacterium
GCA_945638885.1ContigCALZEB000000000SAMEA110321989
uncultured bacterium
GCA_945638775.1ContigCALZDW000000000SAMEA110322026
uncultured bacterium
GCA_945623835.1ContigCALZCC000000000SAMEA110322044
uncultured bacterium
GCA_945638585.1ContigCALZDS000000000SAMEA110322042
uncultured bacterium
GCA_945610235.1ContigCALYZS000000000SAMEA110321997
uncultured bacterium
GCA_945637255.1ContigCALZDF000000000SAMEA110322075
uncultured bacterium
GCA_945612775.1ContigCALZAF000000000SAMEA110322004
uncultured bacterium
GCA_945621445.1ContigCALZBS000000000SAMEA110321978
uncultured bacterium
GCA_945620135.1ContigCALZBN000000000SAMEA110321922
uncultured bacterium

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