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Accession: PRJNA929101 ID: 929101

Clostridium perfringens

Clostridium perfringens Genome sequencing

Molecular characters and phylogenetic analysis of Clostridium

perfringens from different regions in China, from 2013 to 2021

AccessionPRJNA929101
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 29-Jan-2023
China CDC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)179
Other datasets
BioSample179
Assembly179
Assembly details:
Assembly levelNumber of Assemblies
161
18
179
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_030116985.1ScaffoldJAQSII000000000SAMN32952398
cp2020SDY010
GCA_030116955.1ScaffoldJAQSIH000000000SAMN32952397
cp2020SDY009
GCA_030116905.1ContigJAQSIK000000000SAMN32952400
cp2020SDY014
GCA_030116915.1ScaffoldJAQSIJ000000000SAMN32952399
cp2020SDY011
GCA_030111205.1ScaffoldJAQSHS000000000SAMN32952381
cp2020SJZ046
GCA_030111185.1ScaffoldJAQSHR000000000SAMN32952380
cp2020SDY012
GCA_030111165.1ScaffoldJAQTLC000000000SAMN32952382
cp2020YL9
GCA_030111145.1ScaffoldJAQSHT000000000SAMN32952383
AAD2018SD078
GCA_030111105.1ScaffoldJAQSHX000000000SAMN32952387
17SD152
GCA_030111095.1ScaffoldJAQSHU000000000SAMN32952384
cp2020SJZ040
GCA_030111085.1ScaffoldJAQSHV000000000SAMN32952385
cp2020SJZ006
GCA_030111065.1ScaffoldJAQSHW000000000SAMN32952386
cp2020SJZ041
GCA_030111005.1ScaffoldJAQSHY000000000SAMN32952388
17SD154
GCA_030111045.1ScaffoldJAQSIA000000000SAMN32952390
17SD155
GCA_030111015.1ScaffoldJAQSIB000000000SAMN32952391
cp2020SJZ033
GCA_030110965.1ScaffoldJAQSHZ000000000SAMN32952389
cp2020wz011
GCA_030110975.1ScaffoldJAQSIC000000000SAMN32952392
2018-YCVTN979
GCA_030110945.1ScaffoldJAQSIE000000000SAMN32952394
cp2020SJZ004
GCA_030110905.1ScaffoldJAQSIF000000000SAMN32952395
cp2019SJZ001
GCA_030110895.1ScaffoldJAQSID000000000SAMN32952393
cp2020SJZ043
GCA_030110885.1ScaffoldJAQSIG000000000SAMN32952396
cp2020SDY007
GCA_030121445.1ScaffoldJAROAK000000000SAMN33777526
cp2020SJZ003
GCA_030121415.1ScaffoldJAROAL000000000SAMN33777525
cp2019SJZ002
GCA_030121405.1ScaffoldJAROAI000000000SAMN33777528
cp2020SJZ007
GCA_030121385.1ScaffoldJAROAJ000000000SAMN33777527
cp2020SJZ005
GCA_030121365.1ContigJAROAH000000000SAMN33777529
cp2020SJZ008
GCA_030121345.1ScaffoldJAROAG000000000SAMN33777530
cp2020SJZ009
GCA_030121325.1ScaffoldJAROAF000000000SAMN33777531
cp2020SJZ010
GCA_030121295.1ScaffoldJAROAD000000000SAMN33777533
cp2020SJZ012
GCA_030121285.1ScaffoldJAROAE000000000SAMN33777532
cp2020SJZ011
GCA_030121265.1ScaffoldJAROAC000000000SAMN33777534
cp2020SJZ013
GCA_030121235.1ContigJAROAA000000000SAMN33777536
cp2020SJZ015
GCA_030121225.1ScaffoldJAROAB000000000SAMN33777535
cp2020SJZ014
GCA_030121205.1ScaffoldJARNZZ000000000SAMN33777537
cp2020SJZ016
GCA_030121185.1ScaffoldJARNZU000000000SAMN33777542
cp2020SJZ022
GCA_030121165.1ScaffoldJARNZV000000000SAMN33777541
cp2020SJZ021
GCA_030121145.1ScaffoldJARNZX000000000SAMN33777539
cp2020SJZ018
GCA_030121125.1ScaffoldJARNZY000000000SAMN33777538
cp2020SJZ017
GCA_030121105.1ScaffoldJARNZW000000000SAMN33777540
cp2020SJZ019
GCA_030121075.1ScaffoldJARNZS000000000SAMN33777544
cp2020SJZ024
GCA_030121065.1ScaffoldJARNZT000000000SAMN33777543
cp2020SJZ023
GCA_030121045.1ScaffoldJARNZR000000000SAMN33777545
cp2020SJZ025
GCA_030121025.1ScaffoldJARNZQ000000000SAMN33777546
cp2020SJZ027
GCA_030121005.1ScaffoldJARNZK000000000SAMN33777552
cp2020SJZ034
GCA_030120975.1ContigJARNZO000000000SAMN33777548
cp2020SJZ029
GCA_030120965.1ScaffoldJARNZP000000000SAMN33777547
cp2020SJZ028
GCA_030120945.1ScaffoldJARNZN000000000SAMN33777549
cp2020SJZ030
GCA_030120925.1ContigJARNZM000000000SAMN33777550
cp2020SJZ031
GCA_030120905.1ScaffoldJARNZL000000000SAMN33777551
cp2020SJZ032
GCA_030120885.1ScaffoldJARNZJ000000000SAMN33777553
cp2020SJZ035
GCA_030120855.1ScaffoldJARNZB000000000SAMN33777561
cp2020SJZ047
GCA_030120845.1ScaffoldJARNZI000000000SAMN33777554
cp2020SJZ036
GCA_030120825.1ContigJARNZH000000000SAMN33777555
cp2020SJZ037
GCA_030120805.1ScaffoldJARNZG000000000SAMN33777556
cp2020SJZ038
GCA_030120775.1ScaffoldJARNZF000000000SAMN33777557
cp2020SJZ039
GCA_030120765.1ContigJARNZE000000000SAMN33777558
cp2020SJZ042
GCA_030120745.1ContigJARNZD000000000SAMN33777559
cp2020SJZ044
GCA_030120725.1ScaffoldJARNZC000000000SAMN33777560
cp2020SJZ045
GCA_030120695.1ScaffoldJARNZA000000000SAMN33777563
JN3 2-1
GCA_030120685.1ScaffoldJARNYZ000000000SAMN33777564
JN4 2-2
GCA_030120665.1ScaffoldJARNYY000000000SAMN33777565
AAD2017SD029
GCA_030120645.1ScaffoldJARNYW000000000SAMN33777567
AAD2017SD055
GCA_030120625.1ScaffoldJARNYX000000000SAMN33777566
AAD2017SD051
GCA_030120605.1ScaffoldJARNYU000000000SAMN33777569
AAD2017SD077
GCA_030120585.1ScaffoldJARNYV000000000SAMN33777568
AAD2017SD072
GCA_030120565.1ContigJARNYT000000000SAMN33777570
AAD2017SD083
GCA_030120495.1ScaffoldJARNYP000000000SAMN33777574
AAD2017SD114
GCA_030120505.1ScaffoldJARNYQ000000000SAMN33777573
AAD2017SD113
GCA_030120515.1ScaffoldJARNYS000000000SAMN33777571
AAD2017SD094
GCA_030120485.1ScaffoldJARNYR000000000SAMN33777572
AAD2017SD096
GCA_030120465.1ContigJARNYO000000000SAMN33777575
AAD2017SD116
GCA_030120445.1ScaffoldJARNYN000000000SAMN33777576
AAD2017SD117
GCA_030120395.1ScaffoldJARNYM000000000SAMN33777577
AAD2017SD118
GCA_030120415.1ScaffoldJARNYL000000000SAMN33777578
AAD2017SD121
GCA_030120385.1ScaffoldJARNYE000000000SAMN33777585
AAD2017SD160
GCA_030120365.1ScaffoldJARNYK000000000SAMN33777579
AAD2017SD122
GCA_030120345.1ScaffoldJARNYJ000000000SAMN33777580
AAD2017SD124
GCA_030120315.1ScaffoldJARNYH000000000SAMN33777582
AAD2017SD149
GCA_030120295.1ScaffoldJARNYG000000000SAMN33777583
AAD2017SD150
GCA_030120285.1ScaffoldJARNYI000000000SAMN33777581
AAD2017SD135
GCA_030120265.1ScaffoldJARNYF000000000SAMN33777584
AAD2017SD158
GCA_030120245.1ScaffoldJARNYD000000000SAMN33777586
AAD2017SD163
GCA_030120205.1ScaffoldJARNYB000000000SAMN33777588
AAD2017SD166
GCA_030120215.1ScaffoldJARNYA000000000SAMN33777589
AAD2017SD177
GCA_030120185.1ContigJARNYC000000000SAMN33777587
AAD2017SD165
GCA_030120165.1ScaffoldJARNXT000000000SAMN33777596
AAD2017SD245
GCA_030120145.1ScaffoldJARNXZ000000000SAMN33777590
AAD2017SD178
GCA_030120105.1ScaffoldJARNXX000000000SAMN33777592
AAD2017SD200
GCA_030120095.1ScaffoldJARNXW000000000SAMN33777593
AAD2017SD202
GCA_030120085.1ScaffoldJARNXY000000000SAMN33777591
AAD2017SD181
GCA_030120065.1ScaffoldJARNXV000000000SAMN33777594
AAD2017SD223
GCA_030120045.1ScaffoldJARNXU000000000SAMN33777595
AAD2017SD242
GCA_030120005.1ScaffoldJARNXR000000000SAMN33777598
AAD2017SD276
GCA_030120015.1ScaffoldJARNXS000000000SAMN33777597
AAD2017SD262
GCA_030119985.1ScaffoldJARNXJ000000000SAMN33777606
AAD2018SD065
GCA_030119965.1ScaffoldJARNXQ000000000SAMN33777599
AAD2017SD287
GCA_030119945.1ScaffoldJARNXP000000000SAMN33777600
AAD2017SD342
GCA_030119915.1ScaffoldJARNXN000000000SAMN33777602
AAD2017SD351
GCA_030119905.1ScaffoldJARNXO000000000SAMN33777601
AAD2017SD346
GCA_030119885.1ScaffoldJARNXK000000000SAMN33777605
AAD2018SD037
GCA_030119865.1ScaffoldJARNXL000000000SAMN33777604
AAD2017SD388
GCA_030119845.1ScaffoldJARNXM000000000SAMN33777603
AAD2017SD363
GCA_030119825.1ScaffoldJARNXI000000000SAMN33777607
AAD2018SD066
GCA_030119775.1ScaffoldJARNXH000000000SAMN33777608
AAD2018SD074
GCA_030119765.1ScaffoldJARNXG000000000SAMN33777609
AAD2018SD129
GCA_030119785.1ScaffoldJARNXF000000000SAMN33777610
AAD2018SD153
GCA_030119725.1ScaffoldJARNXB000000000SAMN33777614
AAD2018SD194
GCA_030119735.1ContigJARNXA000000000SAMN33777615
AAD2018SD199
GCA_030119705.1ScaffoldJARNXD000000000SAMN33777612
AAD2018SD165
GCA_030119685.1ScaffoldJARNXE000000000SAMN33777611
AAD2018SD161
GCA_030119665.1ScaffoldJARNXC000000000SAMN33777613
AAD2018SD192
GCA_030119645.1ScaffoldJARNWZ000000000SAMN33777630
2018YN006
GCA_030119625.1ScaffoldJARNWY000000000SAMN33777631
2018YN138
GCA_030119575.1ScaffoldJARNWW000000000SAMN33777633
2018YN191
GCA_030119565.1ContigJARNWV000000000SAMN33777634
2018YN281
GCA_030119585.1ScaffoldJARNWX000000000SAMN33777632
2018YN190
GCA_030119525.1ScaffoldJARNWU000000000SAMN33777636
2018YN294
GCA_030119535.1ScaffoldJARNWT000000000SAMN33777637
2018YN298
GCA_030119505.1ScaffoldJARNWS000000000SAMN33777638
2018YN300
GCA_030119465.1ScaffoldJARNWR000000000SAMN33777639
YN90
GCA_030119475.1ScaffoldJARNWQ000000000SAMN33777640
YN272
GCA_030119435.1ScaffoldJARNWK000000000SAMN33777647
cp2020wz002
GCA_030119425.1ScaffoldJARNWP000000000SAMN33777641
YN714
GCA_030119405.1ScaffoldJARNWO000000000SAMN33777642
YN731-1
GCA_030119385.1ScaffoldJARNWN000000000SAMN33777643
YN758
GCA_030119365.1ScaffoldJARNWM000000000SAMN33777645
B157
GCA_030119345.1ScaffoldJARNWL000000000SAMN33777646
B021
GCA_030119315.1ScaffoldJARNWG000000000SAMN33777651
cp2020wz007
GCA_030119305.1ScaffoldJARNWE000000000SAMN33777653
cp2020wz009
GCA_030119285.1ScaffoldJARNWJ000000000SAMN33777648
cp2020wz004
GCA_030119265.1ContigJARNWI000000000SAMN33777649
cp2020wz005
GCA_030119245.1ScaffoldJARNWH000000000SAMN33777650
cp2020wz006
GCA_030119225.1ScaffoldJARNWF000000000SAMN33777652
cp2020wz008
GCA_030119195.1ScaffoldJARNWD000000000SAMN33777654
cp2020wz010
GCA_030119185.1ScaffoldJARNWB000000000SAMN33777656
cp2020wz013
GCA_030119165.1ScaffoldJARNWC000000000SAMN33777655
cp2020wz012
GCA_030119145.1ScaffoldJARNVW000000000SAMN33777661
cp2020YL5
GCA_030119125.1ScaffoldJARNWA000000000SAMN33777657
cp2020YL1
GCA_030119105.1ScaffoldJARNVY000000000SAMN33777659
cp2020YL3
GCA_030119085.1ScaffoldJARNVZ000000000SAMN33777658
cp2020YL2
GCA_030119065.1ScaffoldJARNVX000000000SAMN33777660
cp2020YL4
GCA_030119045.1ScaffoldJARNVV000000000SAMN33777662
cp2020YL6
GCA_030119025.1ScaffoldJARNVU000000000SAMN33777663
cp2020YL7
GCA_030119005.1ScaffoldJARNVT000000000SAMN33777664
cp2020YL8
GCA_030118965.1ScaffoldJARNVS000000000SAMN33777665
cp2020YL10
GCA_030118975.1ScaffoldJARNVQ000000000SAMN33777667
cp2020YL12
GCA_030118945.1ScaffoldJARNVR000000000SAMN33777666
cp2020YL11
GCA_030118925.1ScaffoldJARNVP000000000SAMN33777668
cp2020YL13
GCA_030118905.1ScaffoldJARNVO000000000SAMN33777669
cp2020YL14
GCA_030118885.1ScaffoldJARNVM000000000SAMN33777671
cp2021XA1 AAD
GCA_030118855.1ScaffoldJARNVN000000000SAMN33777670
AAD2019XAzhou
GCA_030118845.1ScaffoldJARNVL000000000SAMN33777672
XA3
GCA_030118825.1ScaffoldJARNVC000000000SAMN33777681
BJ30124055
GCA_030118805.1ScaffoldJARNVK000000000SAMN33777673
AADXA8
GCA_030118775.1ScaffoldJARNVJ000000000SAMN33777674
XA12
GCA_030118765.1ScaffoldJARNVI000000000SAMN33777675
cp2020HXR87-1
GCA_030118735.1ContigJARNVG000000000SAMN33777677
BJ30120086
GCA_030118725.1ScaffoldJARNVH000000000SAMN33777676
cp2020HXF133
GCA_030118705.1ScaffoldJARNVF000000000SAMN33777678
BJ30109041
GCA_030118645.1ScaffoldJARNVB000000000SAMN33777682
BJ30109062
GCA_030118665.1ContigJARNVE000000000SAMN33777679
BJ30111045
GCA_030118655.1ContigJARNVD000000000SAMN33777680
BJ30124035
GCA_030118625.1ScaffoldJARPRC000000000SAMN33777562
2018-YCVTN986
GCA_030118585.1ScaffoldJARPQY000000000SAMN33777619
cp2020SDY008
GCA_030118575.1ScaffoldJARPRB000000000SAMN33777616
cp2020SDY003
GCA_030118565.1ScaffoldJARPRA000000000SAMN33777617
cp2020SDY004
GCA_030118545.1ScaffoldJARPQZ000000000SAMN33777618
cp2020SDY005
GCA_030118525.1ScaffoldJARPQX000000000SAMN33777620
cp2020SDY013
GCA_030118485.1ScaffoldJARPQT000000000SAMN33777624
cp2020SDY018
GCA_030118495.1ScaffoldJARPQW000000000SAMN33777621
cp2020SDY015
GCA_030118455.1ContigJARPQU000000000SAMN33777623
cp2020SDY017
GCA_030118445.1ScaffoldJARPQV000000000SAMN33777622
cp2020SDY016
GCA_030118425.1ScaffoldJARPQS000000000SAMN33777625
cp2020SDY019
GCA_030118375.1ScaffoldJARPQQ000000000SAMN33777628
cp2020SDY022
GCA_030118365.1ScaffoldJARPQP000000000SAMN33777629
cp2020SDY023
GCA_030118355.1ScaffoldJARPQO000000000SAMN33777644
YNZ79
GCA_030118335.1ScaffoldJARPRD000000000SAMN33777626
cp2020SDY020
GCA_030118325.1ScaffoldJARPQR000000000SAMN33777627
cp2020SDY021
GCA_030118305.1ScaffoldJARPRJ000000000SAMN33777635
2018YN292

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