hot springs metagenome (ID 644733) - BioProject

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Accession: PRJNA644733 ID: 644733

hot springs metagenome

Hot springs metagenome Metagenomic assembly and amplicons

Metagenomic and amplicon study of prokaryotes from different zones of hot springs (e.g. source pools vs channels vs mixing zones)

Accession	PRJNA644733
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	hot springs metagenome[Taxonomy ID: 433727] unclassified sequences; metagenomes; ecological metagenomes; hot springs metagenome
Publications	Sriaporn C et al., "Bacterial and archaeal community distributions and cosmopolitanism across physicochemically diverse hot springs.", ISME Commun, 2023 Aug 18;3(1):80 Sriaporn C et al., "Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs.", Microbiome, 2021 Jun 11;9(1):135
Grants	"Search Results Web results Discovery Projects" (Grant ID DP180103204, Australian Research Council)
Submission	Registration date: 5-Jan-2022 The University of Auckland
Related Resources	Handley lab Te Ao Marama
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	53
SRA Experiments	88
Publications
PubMed	2
PMC	2
Other datasets
BioSample	132
Assembly	53

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

48
5
53

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_031962945.1	JAVRKE000000000	SAMN36993643	TVZ.SD19.124	Acidithiobacillaceae bacterium
GCA_031962925.1	JAVRKD000000000	SAMN36993642	TVZ.SD19.123	Acidithiobacillaceae bacterium
GCA_031962865.1	JAVRKB000000000	SAMN36993640	TVZ.SD19.121	Acidithiobacillaceae bacterium
GCA_031962805.1	JAVRKC000000000	SAMN36993641	TVZ.SD19.122	Acidithiobacillaceae bacterium
GCA_031962755.1	JAVRKF000000000	SAMN36993644	TVZ.SD19.125	Acidithiobacillaceae bacterium
GCA_031962745.1	JAVRKG000000000	SAMN36993645	TVZ.SD19.127	Acidithiobacillus caldus
GCA_031962565.1	JAVRKH000000000	SAMN36993646	TVZ.SD19.128	Acidithiobacillus caldus
GCA_031962625.1	JAVRKO000000000	SAMN36993653	TVZ.SD19.167	Athalassotoga sp.
GCA_031962405.1	JAVRKN000000000	SAMN36993652	TVZ.SD19.166	Athalassotoga sp.
GCA_031962365.1	JAVRKS000000000	SAMN36993657	TVZ.SD19.171	Athalassotoga sp.
GCA_031962325.1	JAVRKP000000000	SAMN36993654	TVZ.SD19.168	Athalassotoga sp.
GCA_031962275.1	JAVRKQ000000000	SAMN36993655	TVZ.SD19.169	Athalassotoga sp.
GCA_031962265.1	JAVRKT000000000	SAMN36993658	TVZ.SD19.172	Athalassotoga sp.
GCA_031962225.1	JAVRKR000000000	SAMN36993656	TVZ.SD19.170	Athalassotoga sp.
GCA_031960985.1	JAVRLX000000000	SAMN36993688	TVZ.SD19.47	Campylobacterales bacterium
GCA_031962665.1	JAVRKI000000000	SAMN36993647	TVZ.SD19.130	Candidatus Igneacidithiobacillus taiwanensis
GCA_031962645.1	JAVRKJ000000000	SAMN36993648	TVZ.SD19.131	Candidatus Igneacidithiobacillus taiwanensis
GCA_031962545.1	JAVRKK000000000	SAMN36993649	TVZ.SD19.132	Candidatus Igneacidithiobacillus taiwanensis
GCA_031962475.1	JAVRKL000000000	SAMN36993650	TVZ.SD19.133	Candidatus Igneacidithiobacillus taiwanensis
GCA_031962425.1	JAVRKM000000000	SAMN36993651	TVZ.SD19.134	Candidatus Igneacidithiobacillus taiwanensis
GCA_021375755.1	JAEPKY000000000	SAMN16630192	TVZ_G4	Candidatus Igneacidithiobacillus waiarikiensis
GCA_031960905.1	JAVRMA000000000	SAMN36993691	TVZ.SD19.56	Desulfurella sp.
GCA_031960885.1	JAVRLY000000000	SAMN36993689	TVZ.SD19.54	Desulfurella sp.
GCA_031960865.1	JAVRLZ000000000	SAMN36993690	TVZ.SD19.55	Desulfurella sp.
GCA_031962085.1	JAVRKX000000000	SAMN36993662	TVZ.SD19.184	Fervidobacterium pennivorans
GCA_031962125.1	JAVRKU000000000	SAMN36993659	TVZ.SD19.181	Mesoaciditogaceae bacterium
GCA_031962105.1	JAVRKV000000000	SAMN36993660	TVZ.SD19.182	Mesoaciditogaceae bacterium
GCA_031962025.1	JAVRKW000000000	SAMN36993661	TVZ.SD19.183	Pseudothermotoga sp.
GCA_031961205.1	JAVRLS000000000	SAMN36993683	TVZ.SD19.244	Thermoplasmataceae archaeon
GCA_031961065.1	JAVRLW000000000	SAMN36993687	TVZ.SD19.248	Thermoplasmataceae archaeon
GCA_031961105.1	JAVRLT000000000	SAMN36993684	TVZ.SD19.245	Thermoplasmataceae archaeon
GCA_031961165.1	JAVRLU000000000	SAMN36993685	TVZ.SD19.246	Thermoplasmataceae archaeon
GCA_031961145.1	JAVRLV000000000	SAMN36993686	TVZ.SD19.247	Thermoplasmataceae archaeon
GCA_031961245.1	JAVRLR000000000	SAMN36993682	TVZ.SD19.239	Thermoplasmatales archaeon I-plasma
GCA_031961345.1	JAVRLN000000000	SAMN36993678	TVZ.SD19.235	Thermoplasmatales archaeon I-plasma
GCA_031961325.1	JAVRLQ000000000	SAMN36993681	TVZ.SD19.238	Thermoplasmatales archaeon I-plasma
GCA_031961305.1	JAVRLP000000000	SAMN36993680	TVZ.SD19.237	Thermoplasmatales archaeon I-plasma
GCA_031961505.1	JAVRLL000000000	SAMN36993676	TVZ.SD19.233	Thermoplasmatales archaeon I-plasma
GCA_031961455.1	JAVRLM000000000	SAMN36993677	TVZ.SD19.234	Thermoplasmatales archaeon I-plasma
GCA_031961395.1	JAVRLO000000000	SAMN36993679	TVZ.SD19.236	Thermoplasmatales archaeon I-plasma
GCA_031961545.1	JAVRLK000000000	SAMN36993675	TVZ.SD19.226	Thermoplasmatota archaeon
GCA_031961525.1	JAVRLI000000000	SAMN36993673	TVZ.SD19.224	Thermoplasmatota archaeon
GCA_031961745.1	JAVRLG000000000	SAMN36993671	TVZ.SD19.222	Thermoplasmatota archaeon
GCA_031961725.1	JAVRLE000000000	SAMN36993669	TVZ.SD19.220	Thermoplasmatota archaeon
GCA_031961705.1	JAVRLD000000000	SAMN36993668	TVZ.SD19.219	Thermoplasmatota archaeon
GCA_031961685.1	JAVRLF000000000	SAMN36993670	TVZ.SD19.221	Thermoplasmatota archaeon
GCA_031961605.1	JAVRLH000000000	SAMN36993672	TVZ.SD19.223	Thermoplasmatota archaeon
GCA_031961585.1	JAVRLJ000000000	SAMN36993674	TVZ.SD19.225	Thermoplasmatota archaeon
GCA_031961825.1	JAVRLC000000000	SAMN36993667	TVZ.SD19.218	Thermoplasmatota archaeon
GCA_031961905.1	JAVRKY000000000	SAMN36993663	TVZ.SD19.214	Thermoplasmatota archaeon
GCA_031961865.1	JAVRLB000000000	SAMN36993666	TVZ.SD19.217	Thermoplasmatota archaeon
GCA_031961985.1	JAVRLA000000000	SAMN36993665	TVZ.SD19.216	Thermoplasmatota archaeon
GCA_031961945.1	JAVRKZ000000000	SAMN36993664	TVZ.SD19.215	Thermoplasmatota archaeon

SRA Data Details

Parameter	Value
Data volume, Gbases	4
Data volume, Mbytes	2337

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hot springs metagenome

Hot springs metagenome Metagenomic assembly and amplicons

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