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Accession: PRJEB66073 ID: 1017316

EMG produced TPA metagenomics assembly of PRJNA752888 data set (Longitudinal saliva bacteriome and early childhood caries).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA752888, and was assembled with metaspades v3. More...
AccessionPRJEB66073
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
SubmissionRegistration date: 14-Sep-2023
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)9792
WGS master132
Publications
PubMed1
PMC1
Other datasets
BioSample132
Assembly132
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
132
132
AssemblyLevelWGSBioSampleTaxonomy
GCA_963554675.1ContigCAUVSD000000000SAMEA114450496
Abiotrophia defectiva
GCA_963555115.1ContigCAUVVL000000000SAMEA114450540
Actinomyces dentalis
GCA_963555485.1ContigCAUVVY000000000SAMEA114450539
Actinomyces gerencseriae
GCA_963555355.1ContigCAUVUI000000000SAMEA114450505
Actinomyces graevenitzii
GCA_963555015.1ContigCAUVUO000000000SAMEA114450527
Actinomyces massiliensis
GCA_963554205.1ContigCAUVQY000000000SAMEA114450557
Actinomyces naeslundii
GCA_963554495.1ContigCAUVTR000000000SAMEA114450498
Actinomyces oris
GCA_963554485.1ContigCAUVSG000000000SAMEA114450494
Actinomyces oris
GCA_963555255.1ContigCAUVUT000000000SAMEA114450489
Aggregatibacter kilianii
GCA_963554335.1ContigCAUVRY000000000SAMEA114450497
Capnocytophaga gingivalis
GCA_963554925.1ContigCAUVTY000000000SAMEA114450586
Capnocytophaga granulosa
GCA_963554775.1ContigCAUVTV000000000SAMEA114450478
Capnocytophaga leadbetteri
GCA_963555215.1ContigCAUVUU000000000SAMEA114450530
Capnocytophaga sputigena
GCA_963554905.1ContigCAUVTZ000000000SAMEA114450520
Capnocytophaga sputigena
GCA_963554755.1ContigCAUVTS000000000SAMEA114450515
Cardiobacterium hominis
GCA_963554265.1ContigCAUVRK000000000SAMEA114450477
Corynebacterium durum
GCA_963554475.1ContigCAUVSC000000000SAMEA114450560
Corynebacterium matruchotii
GCA_963554995.1ContigCAUVUJ000000000SAMEA114450569
Gemella morbillorum
GCA_963554855.1ContigCAUVTJ000000000SAMEA114450595
Granulicatella elegans
GCA_963554255.1ContigCAUVRP000000000SAMEA114450548
Haemophilus haemolyticus
GCA_963554145.1ContigCAUVRQ000000000SAMEA114450589
Haemophilus parahaemolyticus
GCA_963555455.1ContigCAUVVQ000000000SAMEA114450469
Haemophilus parainfluenzae
GCA_963555375.1ContigCAUVVT000000000SAMEA114450464
Haemophilus parainfluenzae
GCA_963554815.1ContigCAUVSN000000000SAMEA114450570
Haemophilus parainfluenzae
GCA_963554315.1ContigCAUVRM000000000SAMEA114450552
Haemophilus paraphrohaemolyticus
GCA_963554695.1ContigCAUVUA000000000SAMEA114450516
Hoylesella loescheii
GCA_963555365.1ContigCAUVUS000000000SAMEA114450514
Kingella denitrificans
GCA_963554625.1ContigCAUVSP000000000SAMEA114450556
Kingella oralis
GCA_963554155.1ContigCAUVRV000000000SAMEA114450479
Lachnoanaerobaculum saburreum
GCA_963554885.1ContigCAUVTX000000000SAMEA114450545
Lacticaseibacillus paracasei
GCA_963554725.1ContigCAUVTF000000000SAMEA114450493
Lancefieldella parvula
GCA_963554305.1ContigCAUVQX000000000SAMEA114450529
Lautropia mirabilis
GCA_963554585.1ContigCAUVTC000000000SAMEA114450490
Neisseria cinerea
GCA_963554125.1ContigCAUVRG000000000SAMEA114450573
Neisseria elongata
GCA_963555345.1ContigCAUVVF000000000SAMEA114450488
Neisseria sicca
GCA_963555285.1ContigCAUVUQ000000000SAMEA114450513
Porphyromonas catoniae
GCA_963555495.1ContigCAUVVU000000000SAMEA114450537
Prevotella conceptionensis
GCA_963555035.1ContigCAUVVJ000000000SAMEA114450591
Prevotella histicola
GCA_963555125.1ContigCAUVUG000000000SAMEA114450473
Rothia aeria
GCA_963555005.1ContigCAUVUD000000000SAMEA114450521
Rothia dentocariosa
GCA_963554825.1ContigCAUVSK000000000SAMEA114450467
Rothia mucilaginosa
GCA_963555415.1ContigCAUVVS000000000SAMEA114450463
Rothia mucilaginosa
GCA_963554955.1ContigCAUVSL000000000SAMEA114450511
Scardovia wiggsiae
GCA_963554635.1ContigCAUVTU000000000SAMEA114450525
Schaalia georgiae
GCA_963554195.1ContigCAUVRO000000000SAMEA114450483
Schaalia odontolytica
GCA_963555235.1ContigCAUVVE000000000SAMEA114450583
Segatella oulorum
GCA_963555445.1ContigCAUVVZ000000000SAMEA114450536
Selenomonas artemidis
GCA_963555465.1ContigCAUVVP000000000SAMEA114450541
Selenomonas noxia
GCA_963554975.1ContigCAUVTL000000000SAMEA114450594
Stenotrophomonas maltophilia
GCA_963555425.1ContigCAUVVV000000000SAMEA114450538
Streptococcus anginosus
GCA_963554795.1ContigCAUVST000000000SAMEA114450501
Streptococcus gordonii
GCA_963554835.1ContigCAUVSR000000000SAMEA114450465
Streptococcus infantis
GCA_963554915.1ContigCAUVSQ000000000SAMEA114450593
Streptococcus mutans
GCA_963554445.1ContigCAUVRH000000000SAMEA114450579
Streptococcus oralis
GCA_963554735.1ContigCAUVSV000000000SAMEA114450486
Streptococcus oralis
GCA_963555195.1ContigCAUVUY000000000SAMEA114450562
Streptococcus oralis
GCA_963555325.1ContigCAUVUW000000000SAMEA114450503
Streptococcus oralis
GCA_963555265.1ContigCAUVUK000000000SAMEA114450550
Streptococcus salivarius
GCA_963555155.1ContigCAUVVB000000000SAMEA114450546
Streptococcus salivarius
GCA_963554785.1ContigCAUVSM000000000SAMEA114450506
Streptococcus salivarius
GCA_963554375.1ContigCAUVRA000000000SAMEA114450578
Streptococcus sanguinis
GCA_963554275.1ContigCAUVQZ000000000SAMEA114450549
Streptococcus sanguinis
GCA_963555025.1ContigCAUVUC000000000SAMEA114450531
Streptococcus sobrinus
GCA_963554985.1ContigCAUVUR000000000SAMEA114450462
Veillonella infantium
GCA_963555395.1ContigCAUVVW000000000SAMEA114450532
Veillonella parvula
GCA_963554875.1ContigCAUVSU000000000SAMEA114450572
Veillonella parvula
GCA_963554745.1ContigCAUVTH000000000SAMEA114450575
Veillonella parvula
GCA_963554645.1ContigCAUVTG000000000SAMEA114450555
uncultured Abiotrophia sp.
GCA_963555075.1ContigCAUVUF000000000SAMEA114450470
uncultured Abiotrophia sp.
GCA_963555105.1ContigCAUVUH000000000SAMEA114450523
uncultured Actinobaculum sp.
GCA_963555065.1ContigCAUVVH000000000SAMEA114450504
uncultured Actinomyces sp.
GCA_963555055.1ContigCAUVVG000000000SAMEA114450564
uncultured Actinomyces sp.
GCA_963555275.1ContigCAUVVC000000000SAMEA114450512
uncultured Actinomyces sp.
GCA_963554355.1ContigCAUVRZ000000000SAMEA114450559
uncultured Actinomyces sp.
GCA_963554705.1ContigCAUVTK000000000SAMEA114450517
uncultured Aggregatibacter sp.
GCA_963554435.1ContigCAUVRU000000000SAMEA114450582
uncultured Alloprevotella sp.
GCA_963555145.1ContigCAUVVK000000000SAMEA114450524
uncultured Alloprevotella sp.
GCA_963555085.1ContigCAUVUE000000000SAMEA114450544
uncultured Ancrocorticia sp.
GCA_963554555.1ContigCAUVTB000000000SAMEA114450592
uncultured Bergeyella sp.
GCA_963555045.1ContigCAUVUB000000000SAMEA114450502
uncultured Candidatus Saccharibacteria bacterium
GCA_963555175.1ContigCAUVUN000000000SAMEA114450528
uncultured Candidatus Saccharibacteria bacterium
GCA_963555185.1ContigCAUVUP000000000SAMEA114450577
uncultured Candidatus Saccharibacteria bacterium
GCA_963554655.1ContigCAUVSH000000000SAMEA114450485
uncultured Candidatus Saccharibacteria bacterium
GCA_963554365.1ContigCAUVQW000000000SAMEA114450535
uncultured Candidatus Saccharibacteria bacterium
GCA_963554215.1ContigCAUVRN000000000SAMEA114450547
uncultured Candidatus Saccharibacteria bacterium
GCA_963554285.1ContigCAUVQS000000000SAMEA114450482
uncultured Candidatus Saccharibacteria bacterium
GCA_963554325.1ContigCAUVQT000000000SAMEA114450474
uncultured Candidatus Saccharimonas sp.
GCA_963554105.1ContigCAUVRE000000000SAMEA114450534
uncultured Capnocytophaga sp.
GCA_963554525.1ContigCAUVTM000000000SAMEA114450475
uncultured Capnocytophaga sp.
GCA_963555135.1ContigCAUVVI000000000SAMEA114450542
uncultured Capnocytophaga sp.
GCA_963555385.1ContigCAUVWA000000000SAMEA114450543
uncultured Cardiobacterium sp.
GCA_963555435.1ContigCAUVVX000000000SAMEA114450471
uncultured Granulicatella sp.
GCA_963554845.1ContigCAUVSO000000000SAMEA114450554
uncultured Granulicatella sp.
GCA_963554465.1ContigCAUVSS000000000SAMEA114450510
uncultured Kingella sp.
GCA_963554115.1ContigCAUVRJ000000000SAMEA114450571
uncultured Micrococcales bacterium
GCA_963554765.1ContigCAUVTI000000000SAMEA114450567
uncultured Neisseria sp.
GCA_963555305.1ContigCAUVVN000000000SAMEA114450587
uncultured Neisseria sp.
GCA_963554965.1ContigCAUVSY000000000SAMEA114450576
uncultured Neisseria sp.
GCA_963554535.1ContigCAUVSI000000000SAMEA114450588
uncultured Neisseria sp.
GCA_963554515.1ContigCAUVSJ000000000SAMEA114450466
uncultured Neisseria sp.
GCA_963554345.1ContigCAUVRR000000000SAMEA114450519
uncultured Neisseria sp.
GCA_963554615.1ContigCAUVSW000000000SAMEA114450553
uncultured Ottowia sp.
GCA_963555225.1ContigCAUVUM000000000SAMEA114450484
uncultured Porphyromonadaceae bacterium
GCA_963554945.1ContigCAUVTN000000000SAMEA114450584
uncultured Porphyromonadaceae bacterium
GCA_963554545.1ContigCAUVSE000000000SAMEA114450574
uncultured Porphyromonas sp.
GCA_963554865.1ContigCAUVTT000000000SAMEA114450563
uncultured Porphyromonas sp.
GCA_963555315.1ContigCAUVVM000000000SAMEA114450472
uncultured Porphyromonas sp.
GCA_963554505.1ContigCAUVSB000000000SAMEA114450480
uncultured Porphyromonas sp.
GCA_963554665.1ContigCAUVSZ000000000SAMEA114450518
uncultured Porphyromonas sp.
GCA_963555205.1ContigCAUVVD000000000SAMEA114450590
uncultured Prevotella sp.
GCA_963554575.1ContigCAUVTW000000000SAMEA114450585
uncultured Prevotella sp.
GCA_963554595.1ContigCAUVTQ000000000SAMEA114450481
uncultured Prevotella sp.
GCA_963554235.1ContigCAUVRT000000000SAMEA114450492
uncultured Prevotella sp.
GCA_963554605.1ContigCAUVSF000000000SAMEA114450551
uncultured Prevotellaceae bacterium
GCA_963554715.1ContigCAUVTA000000000SAMEA114450566
uncultured Propionibacteriaceae bacterium
GCA_963555165.1ContigCAUVVA000000000SAMEA114450522
uncultured Propionibacterium sp.
GCA_963555405.1ContigCAUVVO000000000SAMEA114450461
uncultured Rothia sp.
GCA_963554935.1ContigCAUVTO000000000SAMEA114450508
uncultured Rothia sp.
GCA_963555245.1ContigCAUVUL000000000SAMEA114450491
uncultured Rothia sp.
GCA_963555475.1ContigCAUVVR000000000SAMEA114450533
uncultured Selenomonas sp.
GCA_963554685.1ContigCAUVTD000000000SAMEA114450499
uncultured Streptococcus sp.
GCA_963555095.1ContigCAUVUZ000000000SAMEA114450568
uncultured Streptococcus sp.
GCA_963554895.1ContigCAUVTP000000000SAMEA114450565
uncultured Streptococcus sp.
GCA_963554805.1ContigCAUVSX000000000SAMEA114450509
uncultured Streptococcus sp.
GCA_963554245.1ContigCAUVRF000000000SAMEA114450558
uncultured Streptococcus sp.
GCA_963554225.1ContigCAUVRD000000000SAMEA114450476
uncultured Streptococcus sp.
GCA_963554405.1ContigCAUVRI000000000SAMEA114450507
uncultured Streptococcus sp.
GCA_963554455.1ContigCAUVSA000000000SAMEA114450561
uncultured Tannerella sp.
GCA_963554425.1ContigCAUVRW000000000SAMEA114450581
uncultured Veillonella sp.
GCA_963555335.1ContigCAUVUX000000000SAMEA114450500
uncultured Veillonella sp.
GCA_963555295.1ContigCAUVUV000000000SAMEA114450526
uncultured bacterium
GCA_963554565.1ContigCAUVTE000000000SAMEA114450580
uncultured bacterium

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