freshwater metagenome (ID 1045862) - BioProject

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Accession: PRJNA1045862 ID: 1045862

freshwater metagenome

Pond in Uppsala (Sweden) Metagenome

Two metagenomes from an artificial pond in Stadstragarden, Uppsala (Sweden). Sampled on the 23rd of July 2021.

Accession	PRJNA1045862
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater metagenome[Taxonomy ID: 449393] unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
Submission	Registration date: 27-Dec-2023 Stockholm University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	52
SRA Experiments	2
Other datasets
BioSample	54
Assembly	52

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

52
52

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_034680685.1	JAXIUK000000000	SAMN38481217	MAG47	Aquirufa sp.
GCA_034680145.1	JAXITI000000000	SAMN38481189	MAG19	Aquirufa sp.
GCA_034680345.1	JAXISZ000000000	SAMN38481180	MAG10	Burkholderiaceae bacterium
GCA_034679945.1	JAXITS000000000	SAMN38481199	MAG29	Burkholderiaceae bacterium
GCA_034680845.1	JAXIUE000000000	SAMN38481211	MAG41	Burkholderiaceae bacterium
GCA_034680445.1	JAXISV000000000	SAMN38481176	MAG6	Burkholderiaceae bacterium
GCA_034680245.1	JAXITD000000000	SAMN38481184	MAG14	Candidatus Fonsibacter sp.
GCA_034680545.1	JAXIUP000000000	SAMN38481222	MAG52	Candidatus Fonsibacter sp.
GCA_034680015.1	JAXITQ000000000	SAMN38481197	MAG27	Candidatus Methylopumilus sp.
GCA_034680225.1	JAXITF000000000	SAMN38481186	MAG16	Candidatus Nanopelagicales bacterium
GCA_034680465.1	JAXIST000000000	SAMN38481174	MAG4	Candidatus Nanopelagicales bacterium
GCA_034680185.1	JAXITH000000000	SAMN38481188	MAG18	Candidatus Planktophila sp.
GCA_034680985.1	JAXIUD000000000	SAMN38481210	MAG40	Candidatus Planktophila sp.
GCA_034680915.1	JAXIUB000000000	SAMN38481208	MAG38	Candidatus Planktophila sp.
GCA_034680625.1	JAXIUM000000000	SAMN38481219	MAG49	Chitinophagaceae bacterium
GCA_034680125.1	JAXITL000000000	SAMN38481192	MAG22	Chitinophagaceae bacterium
GCA_034680045.1	JAXITO000000000	SAMN38481195	MAG25	Crocinitomicaceae bacterium
GCA_034680605.1	JAXIUN000000000	SAMN38481220	MAG50	Crocinitomicaceae bacterium
GCA_034680785.1	JAXIUF000000000	SAMN38481212	MAG42	Crocinitomicaceae bacterium
GCA_034680385.1	JAXISX000000000	SAMN38481178	MAG8	Crocinitomicaceae bacterium
GCA_034680485.1	JAXISS000000000	SAMN38481173	MAG3	Cryomorphaceae bacterium
GCA_034679985.1	JAXITR000000000	SAMN38481198	MAG28	Cryomorphaceae bacterium
GCA_034680425.1	JAXISU000000000	SAMN38481175	MAG5	Cyclobacterium sp.
GCA_034680965.1	JAXIUA000000000	SAMN38481207	MAG37	Flavobacteriaceae bacterium
GCA_034680525.1	JAXISR000000000	SAMN38481172	MAG2	Flavobacteriaceae bacterium
GCA_034681105.1	JAXITW000000000	SAMN38481203	MAG33	Fluviicola sp.
GCA_034680265.1	JAXITE000000000	SAMN38481185	MAG15	Fluviicola sp.
GCA_034680745.1	JAXIUG000000000	SAMN38481213	MAG43	Limnohabitans sp.
GCA_034680285.1	JAXITC000000000	SAMN38481183	MAG13	Limnohabitans sp.
GCA_034679965.1	JAXITT000000000	SAMN38481200	MAG30	Methylococcaceae bacterium
GCA_034680165.1	JAXITJ000000000	SAMN38481190	MAG20	Methylococcaceae bacterium
GCA_034680645.1	JAXIUL000000000	SAMN38481218	MAG48	Methylococcus sp.
GCA_034680585.1	JAXIUO000000000	SAMN38481221	MAG51	Methylocystis sp.
GCA_034680205.1	JAXITG000000000	SAMN38481187	MAG17	Microbacteriaceae bacterium
GCA_034680105.1	JAXITK000000000	SAMN38481191	MAG21	Noviherbaspirillum sp.
GCA_034680505.1	JAXISQ000000000	SAMN38481171	MAG1	Noviherbaspirillum sp.
GCA_034681125.1	JAXITY000000000	SAMN38481205	MAG35	Noviherbaspirillum sp.
GCA_034680905.1	JAXIUC000000000	SAMN38481209	MAG39	Noviherbaspirillum sp.
GCA_034681065.1	JAXITZ000000000	SAMN38481206	MAG36	Noviherbaspirillum sp.
GCA_034681085.1	JAXITV000000000	SAMN38481202	MAG32	Owenweeksia sp.
GCA_034680065.1	JAXITN000000000	SAMN38481194	MAG24	Owenweeksia sp.
GCA_034680305.1	JAXITB000000000	SAMN38481182	MAG12	Polaromonas sp.
GCA_034680665.1	JAXIUJ000000000	SAMN38481216	MAG46	Polaromonas sp.
GCA_034680725.1	JAXIUI000000000	SAMN38481215	MAG45	Polynucleobacter sp.
GCA_034680405.1	JAXISW000000000	SAMN38481177	MAG7	Polynucleobacter sp.
GCA_034680325.1	JAXITA000000000	SAMN38481181	MAG11	Polynucleobacter sp.
GCA_034680005.1	JAXITP000000000	SAMN38481196	MAG26	Roseobacteraceae bacterium
GCA_034681225.1	JAXITX000000000	SAMN38481204	MAG34	Roseobacteraceae bacterium
GCA_034680765.1	JAXIUH000000000	SAMN38481214	MAG44	Sphingobacteriaceae bacterium
GCA_034680085.1	JAXITM000000000	SAMN38481193	MAG23	Sphingobacteriaceae bacterium
GCA_034680365.1	JAXISY000000000	SAMN38481179	MAG9	Sphingomonadaceae bacterium
GCA_034681265.1	JAXITU000000000	SAMN38481201	MAG31	Sphingomonadaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	115
Data volume, Mbytes	38647

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freshwater metagenome

Pond in Uppsala (Sweden) Metagenome

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