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Accession: PRJNA925477 ID: 925477

Wastewater

Genome-Centric analyses of 165 metagenomes show the prevalence of antimicrobial resistance in activated sludge and wastewater treatments plants

Antimicrobial resistance (AMR) has been recognized as a global challenge threatening human and animal health. More...
AccessionPRJNA925477
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismwastewater metagenome[Taxonomy ID: 527639]
unclassified sequences; metagenomes; ecological metagenomes; wastewater metagenome
PublicationsAbdulkadir N et al., "Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.", Microbiol Spectr, 2024 Mar 5;12(3):e0291823
SubmissionRegistration date: 9-Jan-2024
CLUE-TERRA
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)5916
Publications
PubMed1
PMC1
Other datasets
BioSample5918
Assembly5916
Assembly details:
Assembly levelNumber of Assemblies
5848
68
5916
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_035441145.1ScaffoldDAORNS000000000SAMN32867658
AMR_MDS_5441
GCA_035440925.1ScaffoldDAORNJ000000000SAMN32867667
AMR_MDS_5450
GCA_035440685.1ScaffoldDAORMW000000000SAMN32867680
AMR_MDS_5463
GCA_035440645.1ScaffoldDAORMV000000000SAMN32867681
AMR_MDS_5464
GCA_035440265.1ScaffoldDAORLY000000000SAMN32867704
AMR_MDS_5487
GCA_035439985.1ScaffoldDAORLI000000000SAMN32867720
AMR_MDS_5503
GCA_035437285.1ScaffoldDAOMXU000000000SAMN32867865
AMR_MDS_5644
GCA_035422285.1ScaffoldDAOMLC000000000SAMN32867015
AMR_MDS_4856
GCA_035409545.1ScaffoldDAONPJ000000000SAMN32866330
AMR_MDS_4359
GCA_035406145.1ScaffoldDAONKJ000000000SAMN32865687
AMR_MDS_3716
GCA_035402605.1ScaffoldDAONDO000000000SAMN32865864
AMR_MDS_3893
GCA_035401445.1ScaffoldDAONBI000000000SAMN32865922
AMR_MDS_3951
GCA_035366875.1ScaffoldDAOSIT000000000SAMN32863223
AMR_MDS_1694
GCA_035359035.1ScaffoldDAORXS000000000SAMN32863510
AMR_MDS_1981
GCA_035347635.1ScaffoldDAORFT000000000SAMN32852164
AMR_MDS_0821
GCA_035347075.1ScaffoldDAOREO000000000SAMN32852195
AMR_MDS_0852
GCA_035346835.1ScaffoldDAOREH000000000SAMN32852202
AMR_MDS_0859
GCA_035346435.1ScaffoldDAORDW000000000SAMN32852213
AMR_MDS_0870
GCA_035346035.1ScaffoldDAORDM000000000SAMN32852223
AMR_MDS_0880
GCA_035345495.1ScaffoldDAORCO000000000SAMN32852247
AMR_MDS_0904
GCA_035345395.1ScaffoldDAORCJ000000000SAMN32852252
AMR_MDS_0909
GCA_035344715.1ScaffoldDAORBC000000000SAMN32852285
AMR_MDS_0942
GCA_035344595.1ScaffoldDAORBB000000000SAMN32852286
AMR_MDS_0943
GCA_035339995.1ScaffoldDAOQJN000000000SAMN32810231
AMR_MDS_0599
GCA_035339215.1ScaffoldDAOQHV000000000SAMN32810275
AMR_MDS_0643
GCA_035339035.1ScaffoldDAOQHL000000000SAMN32810285
AMR_MDS_0653
GCA_035338835.1ScaffoldDAOQHB000000000SAMN32810295
AMR_MDS_0663
GCA_035338435.1ScaffoldDAOQGH000000000SAMN32810315
AMR_MDS_0683
GCA_035338275.1ScaffoldDAOQGA000000000SAMN32810322
AMR_MDS_0690
GCA_035337875.1ScaffoldDAOQFD000000000SAMN32810345
AMR_MDS_0713
GCA_035337355.1ScaffoldDAOQEK000000000SAMN32810364
AMR_MDS_0732
GCA_035337065.1ScaffoldDAOQDW000000000SAMN32810378
AMR_MDS_0746
GCA_035336505.1ScaffoldDAOQCV000000000SAMN32810405
AMR_MDS_0773
GCA_035336245.1ScaffoldDAOQCH000000000SAMN32810419
AMR_MDS_0787
GCA_035336025.1ScaffoldDAOQBV000000000SAMN32810431
AMR_MDS_0799
GCA_035335945.1ScaffoldDAOQNF000000000SAMN32810135
AMR_MDS_0503
GCA_035335465.1ScaffoldDAOQMD000000000SAMN32810163
AMR_MDS_0531
GCA_035335345.1ScaffoldDAOQLY000000000SAMN32810168
AMR_MDS_0536
GCA_035335385.1ScaffoldDAOQMA000000000SAMN32810166
AMR_MDS_0534
GCA_035335085.1ScaffoldDAOQLK000000000SAMN32810182
AMR_MDS_0550
GCA_035334825.1ScaffoldDAOQKX000000000SAMN32810195
AMR_MDS_0563
GCA_035334445.1ScaffoldDAOQKF000000000SAMN32810213
AMR_MDS_0581
GCA_035334185.1ScaffoldDAOQJP000000000SAMN32810229
AMR_MDS_0597
GCA_035333945.1ScaffoldDAOQQZ000000000SAMN32810037
AMR_MDS_0405
GCA_035331625.1ScaffoldDAOLKK000000000SAMN32809543
AMR_MDS_0334
GCA_035331305.1ScaffoldDAOLKY000000000SAMN32809557
AMR_MDS_0348
GCA_035331385.1ScaffoldDAOLKX000000000SAMN32809556
AMR_MDS_0347
GCA_035330805.1ScaffoldDAOLLQ000000000SAMN32809575
AMR_MDS_0366
GCA_035330765.1ScaffoldDAOLLR000000000SAMN32809576
AMR_MDS_0367
GCA_035330125.1ScaffoldDAOLMX000000000SAMN32809608
AMR_MDS_0399
GCA_035328015.1ScaffoldDAOLJP000000000SAMN32809522
AMR_MDS_0313
GCA_035378665.1ScaffoldDAOSUJ000000000SAMN32864259
AMR_MDS_2192
GCA_035402025.1ScaffoldDAONCL000000000SAMN32865893
AMR_MDS_3922
GCA_035409085.1ScaffoldDAONOL000000000SAMN32866354
AMR_MDS_4383
GCA_035349535.1ScaffoldDAOPSR000000000SAMN32854670
AMR_MDS_1465
GCA_035378345.1ScaffoldDAOSUA000000000SAMN32864268
AMR_MDS_2201
GCA_035371925.1ScaffoldDAORXT000000000SAMN32863509
AMR_MDS_1980
GCA_035402265.1ScaffoldDAONCX000000000SAMN32865881
AMR_MDS_3910
GCA_035412245.1ScaffoldDAONUN000000000SAMN32866196
AMR_MDS_4225
GCA_035384905.1ScaffoldDAOOJC000000000SAMN32864838
AMR_MDS_2763
GCA_035378765.1ScaffoldDAOSUO000000000SAMN32864254
AMR_MDS_2187
GCA_035427825.1ScaffoldDAOMCK000000000SAMN32867241
AMR_MDS_5082
GCA_035427745.1ScaffoldDAOMCF000000000SAMN32867246
AMR_MDS_5087
GCA_035401545.1ScaffoldDAONBL000000000SAMN32865919
AMR_MDS_3948
GCA_035406485.1ScaffoldDAONLC000000000SAMN32865668
AMR_MDS_3697
GCA_035378625.1ScaffoldDAOSUK000000000SAMN32864258
AMR_MDS_2191
GCA_035371665.1ScaffoldDAORXD000000000SAMN32863525
AMR_MDS_1996
GCA_035360895.1ScaffoldDAOSBL000000000SAMN32863413
AMR_MDS_1884
GCA_035349555.1ScaffoldDAOPSP000000000SAMN32854672
AMR_MDS_1467
GCA_035402385.1ScaffoldDAONDD000000000SAMN32865875
AMR_MDS_3904
GCA_035412285.1ScaffoldDAONUP000000000SAMN32866194
AMR_MDS_4223
GCA_035409585.1ScaffoldDAONPK000000000SAMN32866329
AMR_MDS_4358
GCA_035382685.1ScaffoldDAOTAR000000000SAMN32864095
AMR_MDS_2028
GCA_035593395.1ScaffoldDAOSVC000000000SAMN32864240
AMR_MDS_2173
GCA_035362595.1ScaffoldDAOSDT000000000SAMN32863353
AMR_MDS_1824
GCA_035410225.1ScaffoldDAONQS000000000SAMN32866295
AMR_MDS_4324
GCA_035399265.1ScaffoldDAOPIT000000000SAMN32865031
AMR_MDS_3296
GCA_035406905.1ScaffoldDAONZS000000000SAMN32866061
AMR_MDS_4090
GCA_035447465.1ScaffoldDAOTHC000000000SAMN33868085
AMR_MDS_3061
GCA_035327405.1ScaffoldDAOLDK000000000SAMN32809361
AMR_MDS_0152
GCA_035329525.1ScaffoldDAOLGQ000000000SAMN32809445
AMR_MDS_0236
GCA_035427545.1ScaffoldDAOMBX000000000SAMN32867254
AMR_MDS_5095
GCA_035427405.1ScaffoldDAOMBR000000000SAMN32867260
AMR_MDS_5101
GCA_035443245.1ScaffoldDAORRZ000000000SAMN32867547
AMR_MDS_5330
GCA_035432825.1ScaffoldDAORTU000000000SAMN32867500
AMR_MDS_5283
GCA_035329685.1ScaffoldDAOLGI000000000SAMN32809437
AMR_MDS_0228
GCA_035427765.1ContigDAOMCH000000000SAMN32867244
AMR_MDS_5085
GCA_035427525.1ScaffoldDAOMBU000000000SAMN32867257
AMR_MDS_5098
GCA_035427785.1ScaffoldDAOMCI000000000SAMN32867243
AMR_MDS_5084
GCA_035427605.1ScaffoldDAOMCA000000000SAMN32867251
AMR_MDS_5092
GCA_035427425.1ScaffoldDAOMBP000000000SAMN32867262
AMR_MDS_5103
GCA_035427925.1ScaffoldDAOMCR000000000SAMN32867234
AMR_MDS_5075
GCA_035331225.1ScaffoldDAOLLA000000000SAMN32809559
AMR_MDS_0350
GCA_035353535.1ScaffoldDAOPZS000000000SAMN32854487
AMR_MDS_1282
GCA_035375025.1ScaffoldDAOSPQ000000000SAMN32864382
AMR_MDS_2315
GCA_035348115.1ScaffoldDAOPQQ000000000SAMN32854723
AMR_MDS_1518
GCA_035342895.1ScaffoldDAOQYA000000000SAMN32852365
AMR_MDS_1022
GCA_035342655.1ScaffoldDAOQXM000000000SAMN32852379
AMR_MDS_1036
GCA_035333125.1ScaffoldDAOQPJ000000000SAMN32810079
AMR_MDS_0447
GCA_035334585.1ScaffoldDAOQKL000000000SAMN32810207
AMR_MDS_0575
GCA_035335405.1ScaffoldDAOQLZ000000000SAMN32810167
AMR_MDS_0535
GCA_035335845.1ScaffoldDAOQNB000000000SAMN32810139
AMR_MDS_0507
GCA_035336965.1ScaffoldDAOQDO000000000SAMN32810386
AMR_MDS_0754
GCA_035337795.1ScaffoldDAOQFC000000000SAMN32810346
AMR_MDS_0714
GCA_035338575.1ScaffoldDAOQGO000000000SAMN32810308
AMR_MDS_0676
GCA_035340355.1ScaffoldDAOQTE000000000SAMN32852491
AMR_MDS_1148
GCA_035341055.1ScaffoldDAOQUN000000000SAMN32852456
AMR_MDS_1113
GCA_035431065.1ScaffoldDAOMHV000000000SAMN32867100
AMR_MDS_4941
GCA_035430545.1ScaffoldDAOMGS000000000SAMN32867129
AMR_MDS_4970
GCA_035422225.1ScaffoldDAOMKY000000000SAMN32867019
AMR_MDS_4860
GCA_035422505.1ScaffoldDAOMLH000000000SAMN32867010
AMR_MDS_4851
GCA_035421705.1ScaffoldDAOLXL000000000SAMN32866507
AMR_MDS_4528
GCA_035425225.1ScaffoldDAOOEI000000000SAMN32866466
AMR_MDS_4487
GCA_035452545.1ScaffoldDAOTQU000000000SAMN33867833
AMR_MDS_2809
GCA_035452065.1ScaffoldDAOTPV000000000SAMN33867858
AMR_MDS_2834
GCA_035448765.1ScaffoldDAOTJP000000000SAMN33868020
AMR_MDS_2996
GCA_035418225.1ScaffoldDAOLQQ000000000SAMN32866684
AMR_MDS_4705
GCA_035416445.1ScaffoldDAOLNF000000000SAMN32866773
AMR_MDS_4794
GCA_035382385.1ScaffoldDAOTAF000000000SAMN32864107
AMR_MDS_2040
GCA_035387465.1ScaffoldDAOOOA000000000SAMN32864710
AMR_MDS_2635
GCA_035386565.1ScaffoldDAOOMG000000000SAMN32864756
AMR_MDS_2681
GCA_035593865.1ScaffoldDAOTAI000000000SAMN32864104
AMR_MDS_2037
GCA_035427905.1ScaffoldDAOMCO000000000SAMN32867237
AMR_MDS_5078
GCA_035427885.1ScaffoldDAOMCN000000000SAMN32867238
AMR_MDS_5079
GCA_035427845.1ScaffoldDAOMCM000000000SAMN32867239
AMR_MDS_5080
GCA_035427385.1ScaffoldDAOMBO000000000SAMN32867263
AMR_MDS_5104
GCA_035428225.1ScaffoldDAOMDE000000000SAMN32867221
AMR_MDS_5062
GCA_035428025.1ScaffoldDAOMCW000000000SAMN32867229
AMR_MDS_5070
GCA_035428745.1ScaffoldDAOMDR000000000SAMN32867208
AMR_MDS_5049
GCA_035429345.1ScaffoldDAOMEQ000000000SAMN32867183
AMR_MDS_5024
GCA_035439645.1ScaffoldDAORKQ000000000SAMN32867738
AMR_MDS_5521
GCA_035435305.1ScaffoldDAOMUB000000000SAMN32867962
AMR_MDS_5741
GCA_035350655.1ScaffoldDAOPUP000000000SAMN32854620
AMR_MDS_1415
GCA_035435285.1ScaffoldDAOMUA000000000SAMN32867963
AMR_MDS_5742
GCA_035435025.1ScaffoldDAOMTO000000000SAMN32867975
AMR_MDS_5754
GCA_035434825.1ScaffoldDAOMTE000000000SAMN32867985
AMR_MDS_5764
GCA_035434945.1ScaffoldDAOMTI000000000SAMN32867981
AMR_MDS_5760
GCA_035435425.1ScaffoldDAOMUI000000000SAMN32867955
AMR_MDS_5734
GCA_035443125.1ScaffoldDAORRS000000000SAMN32867554
AMR_MDS_5337
GCA_035442685.1ScaffoldDAORQY000000000SAMN32867574
AMR_MDS_5357
GCA_035442505.1ScaffoldDAORQP000000000SAMN32867583
AMR_MDS_5366
GCA_035435225.1ScaffoldDAOMTW000000000SAMN32867967
AMR_MDS_5746
GCA_035432965.1ScaffoldDAORUB000000000SAMN32867493
AMR_MDS_5276
GCA_035425805.1ScaffoldDAOLYO000000000SAMN32867341
AMR_MDS_5182
GCA_035426725.1ScaffoldDAOMAH000000000SAMN32867296
AMR_MDS_5137
GCA_035443485.1ScaffoldDAORSL000000000SAMN32867535
AMR_MDS_5318
GCA_035445105.1ScaffoldDAOMQB000000000SAMN32868066
AMR_MDS_5845
GCA_035429705.1ScaffoldDAOMFH000000000SAMN32867166
AMR_MDS_5007
GCA_035432545.1ScaffoldDAORTG000000000SAMN32867514
AMR_MDS_5297
GCA_035404965.1ScaffoldDAONIC000000000SAMN32865746
AMR_MDS_3775
GCA_035396985.1ScaffoldDAOPEH000000000SAMN32865147
AMR_MDS_3412
GCA_035392065.1ScaffoldDAOPMD000000000SAMN32864943
AMR_MDS_3208
GCA_035348015.1ScaffoldDAORGM000000000SAMN32852145
AMR_MDS_0802
GCA_035345275.1ScaffoldDAORCD000000000SAMN32852258
AMR_MDS_0915
GCA_035339715.1ScaffoldDAOQIT000000000SAMN32810251
AMR_MDS_0619
GCA_035520475.1ScaffoldDAORDN000000000SAMN32852222
AMR_MDS_0879
GCA_035324715.1ScaffoldDAOLBE000000000SAMN32809303
AMR_MDS_0094
GCA_035433545.1ScaffoldDAORVC000000000SAMN32867466
AMR_MDS_5249
GCA_035443605.1ScaffoldDAORSQ000000000SAMN32867530
AMR_MDS_5313
GCA_035344195.1ScaffoldDAORAO000000000SAMN32852299
AMR_MDS_0956
GCA_035391245.1ScaffoldDAOPKP000000000SAMN32864983
AMR_MDS_3248
GCA_035401705.1ScaffoldDAONBX000000000SAMN32865907
AMR_MDS_3936
GCA_035329085.1ScaffoldDAOLHL000000000SAMN32809466
AMR_MDS_0257
GCA_035447305.1ScaffoldDAOTGX000000000SAMN33868090
AMR_MDS_3066
GCA_035433765.1ScaffoldDAORVN000000000SAMN32867455
AMR_MDS_5238
GCA_035433345.1ScaffoldDAORUT000000000SAMN32867475
AMR_MDS_5258
GCA_035443325.1ScaffoldDAORSC000000000SAMN32867544
AMR_MDS_5327
GCA_035446405.1ScaffoldDAOMSX000000000SAMN32867992
AMR_MDS_5771
GCA_035435445.1ScaffoldDAOMUH000000000SAMN32867956
AMR_MDS_5735
GCA_035435925.1ScaffoldDAOMVF000000000SAMN32867932
AMR_MDS_5711
GCA_035323605.1ScaffoldDAOKXS000000000SAMN32809213
AMR_MDS_0004
GCA_035325905.1ScaffoldDAOKYY000000000SAMN32809245
AMR_MDS_0036
GCA_035521395.1ScaffoldDAORMA000000000SAMN32867702
AMR_MDS_5485
GCA_035350135.1ScaffoldDAOPTU000000000SAMN32854641
AMR_MDS_1436
GCA_035436345.1ScaffoldDAOMWB000000000SAMN32867910
AMR_MDS_5689
GCA_035440525.1ScaffoldDAORMP000000000SAMN32867687
AMR_MDS_5470
GCA_035440335.1ScaffoldDAORLZ000000000SAMN32867703
AMR_MDS_5486
GCA_035401405.1ScaffoldDAONBG000000000SAMN32865924
AMR_MDS_3953
GCA_035416285.1ScaffoldDAOOHP000000000SAMN32866381
AMR_MDS_4402
GCA_035412405.1ScaffoldDAONUU000000000SAMN32866189
AMR_MDS_4218
GCA_035438325.1ScaffoldDAORID000000000SAMN32867803
AMR_MDS_5586
GCA_035426885.1ScaffoldDAOMAN000000000SAMN32867290
AMR_MDS_5131
GCA_035426365.1ScaffoldDAOLZP000000000SAMN32867314
AMR_MDS_5155
GCA_035347715.1ScaffoldDAORFX000000000SAMN32852160
AMR_MDS_0817
GCA_035344315.1ScaffoldDAORAU000000000SAMN32852293
AMR_MDS_0950
GCA_035345615.1ScaffoldDAORCS000000000SAMN32852243
AMR_MDS_0900
GCA_035346935.1ScaffoldDAOREJ000000000SAMN32852200
AMR_MDS_0857
GCA_035339735.1ScaffoldDAOQIV000000000SAMN32810249
AMR_MDS_0617
GCA_035338815.1ScaffoldDAOQGY000000000SAMN32810298
AMR_MDS_0666
GCA_035338935.1ScaffoldDAOQHG000000000SAMN32810290
AMR_MDS_0658
GCA_035337995.1ScaffoldDAOQFM000000000SAMN32810336
AMR_MDS_0704
GCA_035337475.1ScaffoldDAOQEM000000000SAMN32810362
AMR_MDS_0730
GCA_035335445.1ScaffoldDAOQMB000000000SAMN32810165
AMR_MDS_0533
GCA_035335625.1ScaffoldDAOQML000000000SAMN32810155
AMR_MDS_0523
GCA_035336325.1ScaffoldDAOQCL000000000SAMN32810415
AMR_MDS_0783
GCA_035334865.1ScaffoldDAOQKY000000000SAMN32810194
AMR_MDS_0562
GCA_035333345.1ScaffoldDAOQPV000000000SAMN32810067
AMR_MDS_0435
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AMR_MDS_0416
GCA_035331725.1ScaffoldDAOLKG000000000SAMN32809539
AMR_MDS_0330
GCA_035332665.1ScaffoldDAOQON000000000SAMN32810101
AMR_MDS_0469
GCA_035330205.1ScaffoldDAOLMT000000000SAMN32809604
AMR_MDS_0395
GCA_035328105.1ScaffoldDAOLJJ000000000SAMN32809516
AMR_MDS_0307
GCA_035446165.1ScaffoldDAOMSA000000000SAMN32868015
AMR_MDS_5794
GCA_035444585.1ScaffoldDAOMOZ000000000SAMN32868094
AMR_MDS_5873
GCA_035444245.1ScaffoldDAOMOH000000000SAMN32868112
AMR_MDS_5891
GCA_035444995.1ScaffoldDAOMPW000000000SAMN32868071
AMR_MDS_5850
GCA_035444765.1ScaffoldDAOMPK000000000SAMN32868083
AMR_MDS_5862
GCA_035445465.1ScaffoldDAOMQT000000000SAMN32868048
AMR_MDS_5827
GCA_035434645.1ScaffoldDAOMSU000000000SAMN32867995
AMR_MDS_5774
GCA_035427065.1ScaffoldDAOMAY000000000SAMN32867279
AMR_MDS_5120
GCA_035448265.1ScaffoldDAOTIR000000000SAMN33868044
AMR_MDS_3020
GCA_035391665.1ScaffoldDAOPLM000000000SAMN32864960
AMR_MDS_3225
GCA_035436285.1ScaffoldDAOMVY000000000SAMN32867913
AMR_MDS_5692
GCA_035445625.1ScaffoldDAOMRB000000000SAMN32868040
AMR_MDS_5819
GCA_035444985.1ScaffoldDAOMPV000000000SAMN32868072
AMR_MDS_5851
GCA_035436205.1ScaffoldDAOMVW000000000SAMN32867915
AMR_MDS_5694
GCA_035436305.1ScaffoldDAOMVZ000000000SAMN32867912
AMR_MDS_5691
GCA_035435345.1ScaffoldDAOMUC000000000SAMN32867961
AMR_MDS_5740
GCA_035435005.1ScaffoldDAOMTM000000000SAMN32867977
AMR_MDS_5756
GCA_035434625.1ScaffoldDAOMSQ000000000SAMN32867999
AMR_MDS_5778
GCA_035439245.1ScaffoldDAORJW000000000SAMN32867758
AMR_MDS_5541
GCA_035354035.1ScaffoldDAOQAN000000000SAMN32854466
AMR_MDS_1261
GCA_035436105.1ScaffoldDAOMVQ000000000SAMN32867921
AMR_MDS_5700
GCA_035445055.1ScaffoldDAOMPY000000000SAMN32868069
AMR_MDS_5848
GCA_035444965.1ScaffoldDAOMPT000000000SAMN32868074
AMR_MDS_5853
GCA_035445445.1ScaffoldDAOMQS000000000SAMN32868049
AMR_MDS_5828
GCA_035446385.1ScaffoldDAOMSO000000000SAMN32868001
AMR_MDS_5780
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