plant metagenome (ID 1096928) - BioProject

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Accession: PRJNA1096928 ID: 1096928

plant metagenome

Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.)

Accession	PRJNA1096928
Data Type	Genome sequencing
Scope	Environment
Organism	plant metagenome[Taxonomy ID: 1297885] unclassified sequences; metagenomes; organismal metagenomes; plant metagenome
Submission	Registration date: 6-Apr-2024 Guangxi University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	185
SRA Experiments	52
Other datasets
BioSample	237
Assembly	185

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

185
185

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_039594145.1	JBCNOB000000000	SAMN41035843	SMAGNO116	Achromobacter dolens
GCA_039594635.1	JBCNNB000000000	SAMN41035817	SMAGNO90	Achromobacter ruhlandii
GCA_039594755.1	JBCNMU000000000	SAMN41035810	SMAGNO83	Achromobacter sp.
GCA_039595975.1	JBCNKP000000000	SAMN41035753	SMAGNO26	Achromobacter xylosoxidans
GCA_039593925.1	JBCNOJ000000000	SAMN41035851	SMAGNO124	Acidovorax sp.
GCA_039595715.1	JBCNLC000000000	SAMN41035766	SMAGNO39	Acidovorax sp.
GCA_039596375.1	JBCNJV000000000	SAMN41035733	SMAGNO6	Acinetobacter baylyi
GCA_039595955.1	JBCNKQ000000000	SAMN41035754	SMAGNO27	Acinetobacter bereziniae
GCA_039595055.1	JBCNMF000000000	SAMN41035795	SMAGNO68	Acinetobacter idrijaensis
GCA_039594615.1	JBCNNC000000000	SAMN41035818	SMAGNO91	Acinetobacter johnsonii
GCA_039592725.1	JBCNQR000000000	SAMN41035911	SMAGNO184	Acinetobacter johnsonii
GCA_039593125.1	JBCNPW000000000	SAMN41035890	SMAGNO163	Acinetobacter junii
GCA_039593875.1	JBCNOL000000000	SAMN41035853	SMAGNO126	Acinetobacter lactucae
GCA_039596275.1	JBCNKA000000000	SAMN41035738	SMAGNO11	Acinetobacter proteolyticus
GCA_039593995.1	JBCNOG000000000	SAMN41035848	SMAGNO121	Acinetobacter schindleri
GCA_039594105.1	JBCNNY000000000	SAMN41035840	SMAGNO113	Acinetobacter seifertii
GCA_039593005.1	JBCNQB000000000	SAMN41035895	SMAGNO168	Acinetobacter soli
GCA_039592925.1	JBCNQH000000000	SAMN41035901	SMAGNO174	Acinetobacter sp.
GCA_039593055.1	JBCNQA000000000	SAMN41035894	SMAGNO167	Acinetobacter sp.
GCA_039593955.1	JBCNOH000000000	SAMN41035849	SMAGNO122	Acinetobacter sp.
GCA_039594835.1	JBCNMQ000000000	SAMN41035806	SMAGNO79	Acinetobacter sp.
GCA_039596015.1	JBCNKN000000000	SAMN41035751	SMAGNO24	Acinetobacter sp.
GCA_039593715.1	JBCNOT000000000	SAMN41035861	SMAGNO134	Agrobacterium pusense
GCA_039594325.1	JBCNNO000000000	SAMN41035830	SMAGNO103	Agrobacterium tumefaciens
GCA_039595995.1	JBCNKO000000000	SAMN41035752	SMAGNO25	Asticcacaulis sp.
GCA_039593675.1	JBCNOU000000000	SAMN41035862	SMAGNO135	Bacillus subtilis
GCA_039593315.1	JBCNPN000000000	SAMN41035881	SMAGNO154	Bacillus thuringiensis
GCA_039592775.1	JBCNQN000000000	SAMN41035907	SMAGNO180	Bacillus thuringiensis
GCA_039594295.1	JBCNNR000000000	SAMN41035833	SMAGNO106	Bdellovibrio sp.
GCA_039595495.1	JBCNLK000000000	SAMN41035774	SMAGNO47	Brevundimonas vesicularis
GCA_039596315.1	JBCNJY000000000	SAMN41035736	SMAGNO9	Brucella anthropi
GCA_039595795.1	JBCNKY000000000	SAMN41035762	SMAGNO35	Burkholderia cenocepacia
GCA_039592875.1	JBCNQJ000000000	SAMN41035903	SMAGNO176	Burkholderia cepacia
GCA_039593295.1	JBCNPO000000000	SAMN41035882	SMAGNO155	Burkholderia gladioli
GCA_039594435.1	JBCNNL000000000	SAMN41035827	SMAGNO100	Burkholderia seminalis
GCA_039593915.1	JBCNOI000000000	SAMN41035850	SMAGNO123	Burkholderiaceae bacterium
GCA_039596335.1	JBCNJZ000000000	SAMN41035737	SMAGNO10	Caulobacter sp.
GCA_039592855.1	JBCNQK000000000	SAMN41035904	SMAGNO177	Chitinophaga sp.
GCA_039592905.1	JBCNQG000000000	SAMN41035900	SMAGNO173	Chitinophaga sp.
GCA_039593265.1	JBCNPP000000000	SAMN41035883	SMAGNO156	Chitinophaga sp.
GCA_039593235.1	JBCNPS000000000	SAMN41035886	SMAGNO159	Chitinophaga sp.
GCA_039593325.1	JBCNPM000000000	SAMN41035880	SMAGNO153	Chitinophaga sp.
GCA_039596155.1	JBCNKF000000000	SAMN41035743	SMAGNO16	Chitinophaga sp.
GCA_039596135.1	JBCNKH000000000	SAMN41035745	SMAGNO18	Chitinophaga sp.
GCA_039596475.1	JBCNJQ000000000	SAMN41035728	SMAGNO1	Chitinophaga sp.
GCA_039596455.1	JBCNJR000000000	SAMN41035729	SMAGNO2	Chitinophaga sp.
GCA_039596405.1	JBCNJS000000000	SAMN41035730	SMAGNO3	Chryseobacterium arthrosphaerae
GCA_039596435.1	JBCNJU000000000	SAMN41035732	SMAGNO5	Chryseobacterium gleum
GCA_039595035.1	JBCNMG000000000	SAMN41035796	SMAGNO69	Chryseobacterium mucoviscidosis
GCA_039596295.1	JBCNJX000000000	SAMN41035735	SMAGNO8	Chryseobacterium oranimense
GCA_039594975.1	JBCNMJ000000000	SAMN41035799	SMAGNO72	Chryseobacterium sp.
GCA_039594695.1	JBCNMX000000000	SAMN41035813	SMAGNO86	Chryseobacterium sp.
GCA_039595375.1	JBCNLQ000000000	SAMN41035780	SMAGNO53	Chryseobacterium sp.
GCA_039594795.1	JBCNMR000000000	SAMN41035807	SMAGNO80	Chryseobacterium sp.
GCA_039593035.1	JBCNQD000000000	SAMN41035897	SMAGNO170	Chryseobacterium sp.
GCA_039594875.1	JBCNMP000000000	SAMN41035805	SMAGNO78	Comamonas aquatica
GCA_039594735.1	JBCNMV000000000	SAMN41035811	SMAGNO84	Comamonas testosteroni
GCA_039594395.1	JBCNNN000000000	SAMN41035829	SMAGNO102	Cupriavidus sp.
GCA_039594155.1	JBCNOC000000000	SAMN41035844	SMAGNO117	Cupriavidus taiwanensis
GCA_039595435.1	JBCNLN000000000	SAMN41035777	SMAGNO50	Delftia tsuruhatensis
GCA_039595735.1	JBCNLB000000000	SAMN41035765	SMAGNO38	Duganella sp.
GCA_039594095.1	JBCNOA000000000	SAMN41035842	SMAGNO115	Dyella sp.
GCA_039594275.1	JBCNNV000000000	SAMN41035837	SMAGNO110	Dyella sp.
GCA_039595855.1	JBCNKV000000000	SAMN41035759	SMAGNO32	Enterobacter bugandensis
GCA_039595695.1	JBCNLE000000000	SAMN41035768	SMAGNO41	Enterobacter cloacae
GCA_039595125.1	JBCNMC000000000	SAMN41035792	SMAGNO65	Enterobacter cloacae
GCA_039595675.1	JBCNLD000000000	SAMN41035767	SMAGNO40	Enterobacter kobei
GCA_039595535.1	JBCNLI000000000	SAMN41035772	SMAGNO45	Enterobacter sp.
GCA_039595255.1	JBCNLV000000000	SAMN41035785	SMAGNO58	Enterobacter sp.
GCA_039594245.1	JBCNNT000000000	SAMN41035835	SMAGNO108	Enterobacter sp.
GCA_039595915.1	JBCNKU000000000	SAMN41035758	SMAGNO31	Enterobacter sp.
GCA_039592715.1	JBCNQQ000000000	SAMN41035910	SMAGNO183	Enterobacter sp.
GCA_039592675.1	JBCNQS000000000	SAMN41035912	SMAGNO185	Enterobacter sp.
GCA_039593085.1	JBCNPY000000000	SAMN41035892	SMAGNO165	Enterobacter sp.
GCA_039593635.1	JBCNOW000000000	SAMN41035864	SMAGNO137	Enterobacterales bacterium
GCA_039593615.1	JBCNOY000000000	SAMN41035866	SMAGNO139	Enterobacterales bacterium
GCA_039593755.1	JBCNOQ000000000	SAMN41035858	SMAGNO131	Enterobacteriaceae bacterium
GCA_039596035.1	JBCNKM000000000	SAMN41035750	SMAGNO23	Enterococcus pernyi
GCA_039594415.1	JBCNNM000000000	SAMN41035828	SMAGNO101	Flavobacterium anhuiense
GCA_039596075.1	JBCNKL000000000	SAMN41035749	SMAGNO22	Flavobacterium lindanitolerans
GCA_039596055.1	JBCNKK000000000	SAMN41035748	SMAGNO21	Flavobacterium sp.
GCA_039595875.1	JBCNKT000000000	SAMN41035757	SMAGNO30	Flavobacterium sp.
GCA_039595935.1	JBCNKR000000000	SAMN41035755	SMAGNO28	Flavobacterium sp.
GCA_039593495.1	JBCNPE000000000	SAMN41035872	SMAGNO145	Flavobacterium sp.
GCA_039593425.1	JBCNPH000000000	SAMN41035875	SMAGNO148	Flavobacterium sp.
GCA_039593095.1	JBCNPX000000000	SAMN41035891	SMAGNO164	Flavobacterium sp.
GCA_039592825.1	JBCNQO000000000	SAMN41035908	SMAGNO181	Flavobacterium sp.
GCA_039592815.1	JBCNQM000000000	SAMN41035906	SMAGNO179	Flavobacterium sp.
GCA_039596395.1	JBCNJT000000000	SAMN41035731	SMAGNO4	Fluviicola sp.
GCA_039596355.1	JBCNJW000000000	SAMN41035734	SMAGNO7	Fluviicola sp.
GCA_039594575.1	JBCNNE000000000	SAMN41035820	SMAGNO93	Herbaspirillum huttiense
GCA_039595145.1	JBCNMB000000000	SAMN41035791	SMAGNO64	Herbaspirillum huttiense
GCA_039594535.1	JBCNNG000000000	SAMN41035822	SMAGNO95	Herbaspirillum seropedicae
GCA_039594465.1	JBCNNJ000000000	SAMN41035825	SMAGNO98	Herbaspirillum sp.
GCA_039594025.1	JBCNOD000000000	SAMN41035845	SMAGNO118	Herbaspirillum sp.
GCA_039593195.1	JBCNPR000000000	SAMN41035885	SMAGNO158	Herbaspirillum sp.
GCA_039594555.1	JBCNNF000000000	SAMN41035821	SMAGNO94	Inquilinus sp.
GCA_039594855.1	JBCNMN000000000	SAMN41035803	SMAGNO76	Klebsiella sp.
GCA_039595215.1	JBCNLY000000000	SAMN41035788	SMAGNO61	Klebsiella variicola
GCA_039595195.1	JBCNLZ000000000	SAMN41035789	SMAGNO62	Kosakonia radicincitans
GCA_039592895.1	JBCNQI000000000	SAMN41035902	SMAGNO175	Lactococcus lactis
GCA_039593865.1	JBCNOM000000000	SAMN41035854	SMAGNO127	Leuconostoc sp.
GCA_039594195.1	JBCNNX000000000	SAMN41035839	SMAGNO112	Lysobacter enzymogenes
GCA_039593785.1	JBCNOR000000000	SAMN41035859	SMAGNO132	Niabella sp.
GCA_039593385.1	JBCNPJ000000000	SAMN41035877	SMAGNO150	Novosphingobium sp.
GCA_039595395.1	JBCNLP000000000	SAMN41035779	SMAGNO52	Novosphingobium sp.
GCA_039593575.1	JBCNPA000000000	SAMN41035868	SMAGNO141	Ochrobactrum sp.
GCA_039595515.1	JBCNLJ000000000	SAMN41035773	SMAGNO46	Paenibacillus sp.
GCA_039594995.1	JBCNMH000000000	SAMN41035797	SMAGNO70	Pantoea ananatis
GCA_039595355.1	JBCNLR000000000	SAMN41035781	SMAGNO54	Pantoea dispersa
GCA_039594315.1	JBCNNP000000000	SAMN41035831	SMAGNO104	Pantoea sp.
GCA_039593205.1	JBCNPU000000000	SAMN41035888	SMAGNO161	Pantoea sp.
GCA_039593965.1	JBCNOE000000000	SAMN41035846	SMAGNO119	Pantoea stewartii
GCA_039594955.1	JBCNML000000000	SAMN41035801	SMAGNO74	Paraburkholderia caribensis
GCA_039595415.1	JBCNLO000000000	SAMN41035778	SMAGNO51	Paraburkholderia heleia
GCA_039595335.1	JBCNLS000000000	SAMN41035782	SMAGNO55	Paraburkholderia silvatlantica
GCA_039593375.1	JBCNPL000000000	SAMN41035879	SMAGNO152	Paraburkholderia sp.
GCA_039594935.1	JBCNMM000000000	SAMN41035802	SMAGNO75	Paraburkholderia tropica
GCA_039596175.1	JBCNKG000000000	SAMN41035744	SMAGNO17	Paracidovorax wautersii
GCA_039593445.1	JBCNPG000000000	SAMN41035874	SMAGNO147	Pedobacter sp.
GCA_039594885.1	JBCNMO000000000	SAMN41035804	SMAGNO77	Pedobacter sp.
GCA_039594775.1	JBCNMT000000000	SAMN41035809	SMAGNO82	Pedobacter sp.
GCA_039595015.1	JBCNMI000000000	SAMN41035798	SMAGNO71	Priestia aryabhattai
GCA_039594205.1	JBCNNW000000000	SAMN41035838	SMAGNO111	Pseudescherichia sp.
GCA_039593775.1	JBCNOP000000000	SAMN41035857	SMAGNO130	Pseudoduganella sp.
GCA_039593645.1	JBCNOX000000000	SAMN41035865	SMAGNO138	Pseudoduganella sp.
GCA_039593355.1	JBCNPK000000000	SAMN41035878	SMAGNO151	Pseudoduganella sp.
GCA_039593735.1	JBCNOS000000000	SAMN41035860	SMAGNO133	Pseudomonas aeruginosa
GCA_039595835.1	JBCNKX000000000	SAMN41035761	SMAGNO34	Pseudomonas aeruginosa
GCA_039595075.1	JBCNME000000000	SAMN41035794	SMAGNO67	Pseudomonas monteilii
GCA_039593545.1	JBCNPB000000000	SAMN41035869	SMAGNO142	Pseudomonas mosselii
GCA_039594225.1	JBCNNU000000000	SAMN41035836	SMAGNO109	Pseudomonas nitroreducens
GCA_039593155.1	JBCNPV000000000	SAMN41035889	SMAGNO162	Pseudomonas oryzihabitans
GCA_039595315.1	JBCNLT000000000	SAMN41035783	SMAGNO56	Pseudomonas putida
GCA_039595475.1	JBCNLL000000000	SAMN41035775	SMAGNO48	Pseudomonas putida
GCA_039595655.1	JBCNLF000000000	SAMN41035769	SMAGNO42	Pseudomonas sp.
GCA_039594455.1	JBCNNK000000000	SAMN41035826	SMAGNO99	Pseudomonas sp.
GCA_039594345.1	JBCNNQ000000000	SAMN41035832	SMAGNO105	Pseudomonas sp.
GCA_039594665.1	JBCNMZ000000000	SAMN41035815	SMAGNO88	Pseudomonas sp.
GCA_039592755.1	JBCNQP000000000	SAMN41035909	SMAGNO182	Pseudomonas sp.
GCA_039593535.1	JBCNPC000000000	SAMN41035870	SMAGNO143	Pseudoxanthomonas sp.
GCA_039592975.1	JBCNQE000000000	SAMN41035898	SMAGNO171	Ralstonia sp.
GCA_039595455.1	JBCNLM000000000	SAMN41035776	SMAGNO49	Ralstonia sp.
GCA_039594685.1	JBCNMY000000000	SAMN41035814	SMAGNO87	Ralstonia sp.
GCA_039595235.1	JBCNLW000000000	SAMN41035786	SMAGNO59	Ralstonia sp.
GCA_039594335.1	JBCNNS000000000	SAMN41035834	SMAGNO107	Raoultella sp.
GCA_039595095.1	JBCNMD000000000	SAMN41035793	SMAGNO66	Rhizobium sp.
GCA_039596255.1	JBCNKB000000000	SAMN41035739	SMAGNO12	Rhizobium sp.
GCA_039592785.1	JBCNQL000000000	SAMN41035905	SMAGNO178	Rhizobium sp.
GCA_039593415.1	JBCNPI000000000	SAMN41035876	SMAGNO149	Rhizobium sp.
GCA_039593585.1	JBCNOZ000000000	SAMN41035867	SMAGNO140	Rhizobium sp.
GCA_039595615.1	JBCNLH000000000	SAMN41035771	SMAGNO44	Roseateles puraquae
GCA_039595595.1	JBCNLG000000000	SAMN41035770	SMAGNO43	Roseateles sp.
GCA_039595295.1	JBCNLU000000000	SAMN41035784	SMAGNO57	Roseateles sp.
GCA_039594815.1	JBCNMS000000000	SAMN41035808	SMAGNO81	Roseateles sp.
GCA_039594005.1	JBCNOF000000000	SAMN41035847	SMAGNO120	Roseateles sp.
GCA_039593465.1	JBCNPF000000000	SAMN41035873	SMAGNO146	Roseateles sp.
GCA_039593255.1	JBCNPQ000000000	SAMN41035884	SMAGNO157	Roseateles sp.
GCA_039594655.1	JBCNNA000000000	SAMN41035816	SMAGNO89	Serratia ureilytica
GCA_039596235.1	JBCNKE000000000	SAMN41035742	SMAGNO15	Sphingobacterium sp.
GCA_039596215.1	JBCNKD000000000	SAMN41035741	SMAGNO14	Sphingobacterium sp.
GCA_039596095.1	JBCNKJ000000000	SAMN41035747	SMAGNO20	Sphingobacterium sp.
GCA_039595275.1	JBCNLX000000000	SAMN41035787	SMAGNO60	Sphingobacterium thalpophilum
GCA_039593695.1	JBCNOV000000000	SAMN41035863	SMAGNO136	Sphingobium sp.
GCA_039595815.1	JBCNKW000000000	SAMN41035760	SMAGNO33	Sphingobium yanoikuyae
GCA_039593075.1	JBCNPZ000000000	SAMN41035893	SMAGNO166	Sphingobium yanoikuyae
GCA_039594135.1	JBCNNZ000000000	SAMN41035841	SMAGNO114	Sphingomonas hankookensis
GCA_039594505.1	JBCNNH000000000	SAMN41035823	SMAGNO96	Sphingomonas koreensis
GCA_039596115.1	JBCNKI000000000	SAMN41035746	SMAGNO19	Sphingomonas paucimobilis
GCA_039594485.1	JBCNNI000000000	SAMN41035824	SMAGNO97	Sphingomonas sp.
GCA_039595165.1	JBCNMA000000000	SAMN41035790	SMAGNO63	Sphingomonas sp.
GCA_039595775.1	JBCNKZ000000000	SAMN41035763	SMAGNO36	Stenotrophomonas maltophilia
GCA_039595755.1	JBCNLA000000000	SAMN41035764	SMAGNO37	Stenotrophomonas maltophilia
GCA_039594715.1	JBCNMW000000000	SAMN41035812	SMAGNO85	Stenotrophomonas maltophilia
GCA_039596195.1	JBCNKC000000000	SAMN41035740	SMAGNO13	Stenotrophomonas maltophilia
GCA_039593515.1	JBCNPD000000000	SAMN41035871	SMAGNO144	Stenotrophomonas pavanii
GCA_039593175.1	JBCNPT000000000	SAMN41035887	SMAGNO160	Stenotrophomonas sp.
GCA_039592995.1	JBCNQC000000000	SAMN41035896	SMAGNO169	Stenotrophomonas sp.
GCA_039594565.1	JBCNND000000000	SAMN41035819	SMAGNO92	Stenotrophomonas sp.
GCA_039593815.1	JBCNOO000000000	SAMN41035856	SMAGNO129	Stenotrophomonas sp.
GCA_039593855.1	JBCNOK000000000	SAMN41035852	SMAGNO125	Stenotrophomonas sp.
GCA_039593835.1	JBCNON000000000	SAMN41035855	SMAGNO128	Taibaiella sp.
GCA_039595895.1	JBCNKS000000000	SAMN41035756	SMAGNO29	Variovorax paradoxus
GCA_039592955.1	JBCNQF000000000	SAMN41035899	SMAGNO172	Variovorax sp.
GCA_039594915.1	JBCNMK000000000	SAMN41035800	SMAGNO73	Yokenella regensburgei

SRA Data Details

Parameter	Value
Data volume, Gbases	618
Data volume, Tbytes	0.40

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plant metagenome

Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.)

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