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Accession: PRJNA746701 ID: 746701

Rhizosphere metagenomes from the Byers Peninsula, Livingston Island, Antarctica (62 S)

Rhizosphere metagenomes from the Byers Peninsula, Livingston Island, Antarctica (62 S) Raw sequence reads

Samples were collected during the growing season in the Austral summer (February) of 2019. Rhizospheric soil and bulk soil samples were collected from five sampling sites (Devils point, North beach, Nikopol point, Rotch dome ritli hill, and Rotch dome amadok point) at Byers Peninsula, Livingstone Island, Antarctica. Rhizospheric soils of Deschampsia antarctica (Da samples), Colobanthus quitensis (Cq samples), and Cq growing associated with Da (Da.Cq samples) were sampled at sea level. Each sampling site harbors several sampling points corresponding to points on the ground from where bulk soil and at least one plant were obtained (7 cm of depth) using a sterilized shovel. The bulk soil was taken from the ground free of plants, mosses, lichens or organic matter in the vicinity of each plant or group of them in a radius no greater than 1.5 meters. The soil attached to the plants was divided into two fractions (compartments). The first compartment, called Rhizosphere Surrounding Soil (RSS), was composed of soil released by hand-shaking the roots. The second compartment, Rhizosphere, corresponds to soil firmly adhered to the roots, which did not come loose after the plants were shaken. For each sample and compartment, fine soil particles ( <= 2 mm) were carefully separated from pebbles and roots using a sterile 2 mm metal mesh and stored in 50 mL sterile conical tubes at -20 C until DNA extraction. All plant and soil samples were collected under the permission of the Chilean Antarctic Institute during ECA56.
AccessionPRJNA746701
Data TypeGenome sequencing
ScopeEnvironment
Organismrhizosphere metagenome[Taxonomy ID: 939928]
unclassified sequences; metagenomes; ecological metagenomes; rhizosphere metagenome
Grants
  • "Revealing Spatial And Seasonal Patterns Of Microbial Genetic Diversity Through Metagenomics In A Human Impacted Ecosystem" (Grant ID 11160905, Agencia Nacional de Investigación y Desarrollo)
  • "Deciphering the role of microbial dark matter in the Comau Fjord (42 ºS) through functional genome-resolved metagenomics" (Grant ID 1200834, Agencia Nacional de Investigación y Desarrollo)
  • "Long-range transport of xenobiotics and microorganisms: Teleconnections and influence on terrestrial ecosystems" (Grant ID ACT192057, Agencia Nacional de Investigación y Desarrollo)
SubmissionRegistration date: 15-Jul-2021
Universidad Andres Bello, Castro Lab
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1476
SRA Experiments52
Other datasets
BioSample1536
Assembly1476
Assembly details:
Assembly levelNumber of Assemblies
1476
1476
AssemblyLevelWGSBioSampleIsolateTaxonomy
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GCA_040004485.1ContigJBDUAU000000000SAMN38393226
cluster4_bin.199
GCA_039918295.1ContigJBDSHV000000000SAMN37818498
cluster1_bin.284
GCA_039918515.1ContigJBDSHL000000000SAMN37818488
cluster1_bin.275
GCA_039917455.1ContigJBDSJM000000000SAMN37818541
cluster1_bin.322
GCA_039917595.1ContigJBDSJH000000000SAMN37818536
cluster1_bin.318
GCA_039922255.1ContigJBDSAG000000000SAMN37818301
cluster1_bin.104
GCA_039921485.1ContigJBDSBV000000000SAMN37818342
cluster1_bin.141
GCA_039929545.1ContigJBDSQZ000000000SAMN37818736
cluster1_bin.5
GCA_039927395.1ContigJBDSUZ000000000SAMN37818840
cluster1_bin.593
GCA_039925085.1ContigJBDSZQ000000000SAMN37818961
cluster1_bin.9
GCA_039930325.1ContigJBDSPM000000000SAMN37818697
cluster1_bin.463
GCA_039914715.1ContigJBDSOR000000000SAMN37818676
cluster1_bin.444
GCA_039931655.1ContigJBDTRL000000000SAMN38392980
cluster3_bin.246
GCA_039928035.1ContigJBDSUB000000000SAMN37818816
cluster1_bin.571
GCA_040005775.1ContigJBDTYI000000000SAMN38393161
cluster4_bin.136
GCA_039934455.1ContigJBDTMF000000000SAMN37819289
cluster3_bin.12
GCA_039920925.1ContigJBDSCU000000000SAMN37818367
cluster1_bin.165
GCA_039922645.1ContigJBDTEE000000000SAMN37819079
cluster2_bin.196
GCA_039936735.1ContigJBDTHU000000000SAMN37819174
cluster2_bin.282
GCA_039937875.1ContigJBDTFQ000000000SAMN37819118
cluster2_bin.230
GCA_039936245.1ContigJBDTIT000000000SAMN37819199
cluster2_bin.35
GCA_039924945.1ContigJBDSZV000000000SAMN37818966
cluster1_bin.94
GCA_039933235.1ContigJBDTOL000000000SAMN38392899
cluster3_bin.173
GCA_039931045.1ContigJBDTSR000000000SAMN38393012
cluster3_bin.276
GCA_040005835.1ContigJBDTYB000000000SAMN38393154
cluster4_bin.13
GCA_040007175.1ContigJBDTVP000000000SAMN38393089
cluster3_bin.70
GCA_040002925.1ContigJBDUDM000000000SAMN38393296
cluster4_bin.70
GCA_039932175.1ContigJBDTQM000000000SAMN38392953
cluster3_bin.221
GCA_039920465.1ContigJBDSDT000000000SAMN37818392
cluster1_bin.188
GCA_039921935.1ContigJBDSAW000000000SAMN37818317
cluster1_bin.119
GCA_039926465.1ContigJBDSWX000000000SAMN37818890
cluster1_bin.638
GCA_039934655.1ContigJBDTLS000000000SAMN37819276
cluster3_bin.107
GCA_039934055.1ContigJBDTMX000000000SAMN38392858
cluster3_bin.136
GCA_039934175.1ContigJBDTMR000000000SAMN38392852
cluster3_bin.130
GCA_039933195.1ContigJBDTON000000000SAMN38392901
cluster3_bin.175
GCA_039931595.1ContigJBDTRT000000000SAMN38392988
cluster3_bin.253
GCA_039931125.1ContigJBDTSM000000000SAMN38393007
cluster3_bin.271
GCA_039926405.1ContigJBDSWY000000000SAMN37818891
cluster1_bin.639
GCA_039927315.1ContigJBDSVJ000000000SAMN37818850
cluster1_bin.601
GCA_039927255.1ContigJBDSVL000000000SAMN37818852
cluster1_bin.603
GCA_039926955.1ContigJBDSVZ000000000SAMN37818866
cluster1_bin.616
GCA_039925325.1ContigJBDSZD000000000SAMN37818948
cluster1_bin.78
GCA_039925685.1ContigJBDSYK000000000SAMN37818929
cluster1_bin.673
GCA_039925785.1ContigJBDSYF000000000SAMN37818924
cluster1_bin.669
GCA_039925765.1ContigJBDSYG000000000SAMN37818925
cluster1_bin.67
GCA_039925985.1ContigJBDSXT000000000SAMN37818912
cluster1_bin.658
GCA_039928005.1ContigJBDSTX000000000SAMN37818812
cluster1_bin.568
GCA_039928115.1ContigJBDSTU000000000SAMN37818809
cluster1_bin.565
GCA_039928195.1ContigJBDSTQ000000000SAMN37818805
cluster1_bin.561
GCA_039927855.1ContigJBDSUH000000000SAMN37818822
cluster1_bin.577
GCA_039928395.1ContigJBDSTH000000000SAMN37818796
cluster1_bin.553
GCA_039928355.1ContigJBDSTI000000000SAMN37818797
cluster1_bin.554
GCA_039928495.1ContigJBDSTC000000000SAMN37818791
cluster1_bin.549
GCA_039929785.1ContigJBDSQN000000000SAMN37818724
cluster1_bin.489
GCA_039929465.1ContigJBDSRE000000000SAMN37818741
cluster1_bin.503
GCA_039928965.1ContigJBDSSE000000000SAMN37818767
cluster1_bin.527
GCA_039928985.1ContigJBDSSB000000000SAMN37818764
cluster1_bin.524
GCA_039929085.1ContigJBDSRW000000000SAMN37818759
cluster1_bin.52
GCA_039929245.1ContigJBDSRQ000000000SAMN37818753
cluster1_bin.514
GCA_039929125.1ContigJBDSRV000000000SAMN37818758
cluster1_bin.519
GCA_039928675.1ContigJBDSSR000000000SAMN37818780
cluster1_bin.539
GCA_039921365.1ContigJBDSBX000000000SAMN37818344
cluster1_bin.143
GCA_039920065.1ContigJBDSEL000000000SAMN37818410
cluster1_bin.203
GCA_039921145.1ContigJBDSCJ000000000SAMN37818356
cluster1_bin.154
GCA_039921025.1ContigJBDSCP000000000SAMN37818362
cluster1_bin.16
GCA_039918375.1ContigJBDSHQ000000000SAMN37818493
cluster1_bin.28
GCA_039919635.1ContigJBDSFH000000000SAMN37818432
cluster1_bin.223
GCA_039919705.1ContigJBDSFD000000000SAMN37818428
cluster1_bin.22
GCA_039918915.1ContigJBDSGQ000000000SAMN37818467
cluster1_bin.256
GCA_039918895.1ContigJBDSGR000000000SAMN37818468
cluster1_bin.257
GCA_039919095.1ContigJBDSGH000000000SAMN37818458
cluster1_bin.248
GCA_039919075.1ContigJBDSGJ000000000SAMN37818460
cluster1_bin.25
GCA_039916885.1ContigJBDSKM000000000SAMN37818567
cluster1_bin.346
GCA_039916085.1ContigJBDSMA000000000SAMN37818607
cluster1_bin.382
GCA_039915275.1ContigJBDSNQ000000000SAMN37818649
cluster1_bin.42
GCA_039915925.1ContigJBDSMG000000000SAMN37818613
cluster1_bin.388
GCA_039914575.1ContigJBDSOV000000000SAMN37818680
cluster1_bin.448
GCA_039914455.1ContigJBDSPB000000000SAMN37818686
cluster1_bin.453
GCA_040007755.1ContigJBDTUM000000000SAMN38393060
cluster3_bin.44
GCA_040005255.1ContigJBDTZJ000000000SAMN38393188
cluster4_bin.163
GCA_040006255.1ContigJBDTXI000000000SAMN38393135
cluster4_bin.112
GCA_040004295.1ContigJBDUBD000000000SAMN38393235
cluster4_bin.206
GCA_040006055.1ContigJBDTXU000000000SAMN38393147
cluster4_bin.123
GCA_039932835.1ContigJBDTPI000000000SAMN38392923
cluster3_bin.195
GCA_039928575.1ContigJBDSSW000000000SAMN37818785
cluster1_bin.543
GCA_039928435.1ContigJBDSTD000000000SAMN37818792
cluster1_bin.55
GCA_039925365.1ContigJBDSZA000000000SAMN37818945
cluster1_bin.75
GCA_039926845.1ContigJBDSWC000000000SAMN37818869
cluster1_bin.619
GCA_039916805.1ContigJBDSKS000000000SAMN37818573
cluster1_bin.351
GCA_039916765.1ContigJBDSKT000000000SAMN37818574
cluster1_bin.352
GCA_039919195.1ContigJBDSGB000000000SAMN37818452
cluster1_bin.242
GCA_039920225.1ContigJBDSED000000000SAMN37818402
cluster1_bin.197
GCA_039912675.1ContigJBDSPI000000000SAMN37818693
cluster1_bin.46
GCA_039938075.1ContigJBDTFF000000000SAMN37819107
cluster2_bin.220
GCA_040007915.1ContigJBDTUD000000000SAMN38393051
cluster3_bin.36
GCA_040004585.1ContigJBDUAP000000000SAMN38393221
cluster4_bin.194
GCA_039930885.1ContigJBDTTB000000000SAMN38393023
cluster3_bin.286
GCA_039937115.1ContigJBDTHA000000000SAMN37819154
cluster2_bin.263
GCA_039929045.1ContigJBDSRY000000000SAMN37818761
cluster1_bin.521
GCA_039929265.1ContigJBDSRN000000000SAMN37818750
cluster1_bin.511
GCA_039919895.1ContigJBDSET000000000SAMN37818418
cluster1_bin.210
GCA_039921225.1ContigJBDSCE000000000SAMN37818351
cluster1_bin.15
GCA_039924385.1ContigJBDTAV000000000SAMN37818992
cluster2_bin.117
GCA_039918755.1ContigJBDSGY000000000SAMN37818475
cluster1_bin.263
GCA_039917615.1ContigJBDSJD000000000SAMN37818532
cluster1_bin.314
GCA_039916505.1ContigJBDSLE000000000SAMN37818585
cluster1_bin.362
GCA_039928335.1ContigJBDSTJ000000000SAMN37818798
cluster1_bin.555
GCA_039927235.1ContigJBDSVK000000000SAMN37818851
cluster1_bin.602
GCA_039918495.1ContigJBDSHM000000000SAMN37818489
cluster1_bin.276
GCA_039934615.1ContigJBDTLV000000000SAMN37819279
cluster3_bin.11
GCA_039937895.1ContigJBDTFP000000000SAMN37819117
cluster2_bin.23
GCA_039918035.1ContigJBDSIG000000000SAMN37818509
cluster1_bin.294
GCA_039917655.1ContigJBDSJC000000000SAMN37818531
cluster1_bin.313
GCA_039919985.1ContigJBDSEP000000000SAMN37818414
cluster1_bin.207
GCA_039920325.1ContigJBDSDY000000000SAMN37818397
cluster1_bin.192
GCA_039924115.1ContigJBDTBK000000000SAMN37819007
cluster2_bin.130
GCA_039915835.1ContigJBDSMP000000000SAMN37818622
cluster1_bin.396
GCA_039929205.1ContigJBDSRS000000000SAMN37818755
cluster1_bin.516
GCA_039928615.1ContigJBDSSS000000000SAMN37818781
cluster1_bin.54
GCA_040007275.1ContigJBDTVJ000000000SAMN38393083
cluster3_bin.65
GCA_039917035.1ContigJBDSKG000000000SAMN37818561
cluster1_bin.340
GCA_039918215.1ContigJBDSHX000000000SAMN37818500
cluster1_bin.286
GCA_040003745.1ContigJBDUBZ000000000SAMN38393257
cluster4_bin.35
GCA_039923755.1ContigJBDTCD000000000SAMN37819026
cluster2_bin.148
GCA_039924285.1ContigJBDTBD000000000SAMN37819000
cluster2_bin.124
GCA_039920505.1ContigJBDSDO000000000SAMN37818387
cluster1_bin.183
GCA_039927595.1ContigJBDSUT000000000SAMN37818834
cluster1_bin.588
GCA_039925105.1ContigJBDSZO000000000SAMN37818959
cluster1_bin.88
GCA_039925815.1ContigJBDSYC000000000SAMN37818921
cluster1_bin.666
GCA_039926205.1ContigJBDSXL000000000SAMN37818904
cluster1_bin.650
GCA_039926085.1ContigJBDSXQ000000000SAMN37818909
cluster1_bin.655
GCA_039937375.1ContigJBDTGO000000000SAMN37819142
cluster2_bin.252
GCA_039936815.1ContigJBDTHP000000000SAMN37819169
cluster2_bin.278
GCA_039926645.1ContigJBDSWP000000000SAMN37818882
cluster1_bin.630
GCA_039929145.1ContigJBDSRU000000000SAMN37818757
cluster1_bin.518
GCA_039930385.1ContigJBDSPK000000000SAMN37818695
cluster1_bin.461
GCA_039930125.1ContigJBDSPY000000000SAMN37818709
cluster1_bin.474
GCA_039932055.1ContigJBDTQT000000000SAMN38392961
cluster3_bin.229
GCA_039932315.1ContigJBDTQG000000000SAMN38392947
cluster3_bin.216
GCA_039920945.1ContigJBDSCR000000000SAMN37818364
cluster1_bin.162
GCA_039918595.1ContigJBDSHF000000000SAMN37818482
cluster1_bin.27
GCA_039919215.1ContigJBDSGC000000000SAMN37818453
cluster1_bin.243
GCA_039919545.1ContigJBDSFL000000000SAMN37818436
cluster1_bin.227
GCA_039917915.1ContigJBDSIP000000000SAMN37818518
cluster1_bin.301
GCA_039928905.1ContigJBDSSG000000000SAMN37818769
cluster1_bin.529
GCA_040005095.1ContigJBDTZN000000000SAMN38393192
cluster4_bin.168
GCA_039918175.1ContigJBDSIA000000000SAMN37818503
cluster1_bin.289
GCA_039918995.1ContigJBDSGM000000000SAMN37818463
cluster1_bin.252
GCA_039919235.1ContigJBDSGA000000000SAMN37818451
cluster1_bin.241
GCA_039916985.1ContigJBDSKK000000000SAMN37818565
cluster1_bin.344
GCA_039916125.1ContigJBDSLZ000000000SAMN37818606
cluster1_bin.381
GCA_039915445.1ContigJBDSNH000000000SAMN37818640
cluster1_bin.411
GCA_039920015.1ContigJBDSEM000000000SAMN37818411
cluster1_bin.204
GCA_039922235.1ContigJBDSAJ000000000SAMN37818304
cluster1_bin.107
GCA_039917495.1ContigJBDSJO000000000SAMN37818543
cluster1_bin.324
GCA_039915035.1ContigJBDSOB000000000SAMN37818660
cluster1_bin.43
GCA_039915735.1ContigJBDSMR000000000SAMN37818624
cluster1_bin.398
GCA_039915485.1ContigJBDSNF000000000SAMN37818638
cluster1_bin.41
GCA_039929025.1ContigJBDSRZ000000000SAMN37818762
cluster1_bin.522
GCA_039929345.1ContigJBDSRJ000000000SAMN37818746
cluster1_bin.508
GCA_040007775.1ContigJBDTUJ000000000SAMN38393057
cluster3_bin.41
GCA_040006115.1ContigJBDTXQ000000000SAMN38393143
cluster4_bin.12
GCA_040003555.1ContigJBDUCH000000000SAMN38393265
cluster4_bin.42
GCA_039925525.1ContigJBDSYU000000000SAMN37818939
cluster1_bin.7
GCA_039915355.1ContigJBDSNL000000000SAMN37818644
cluster1_bin.415
GCA_039916145.1ContigJBDSLX000000000SAMN37818604
cluster1_bin.38
GCA_039917795.1ContigJBDSIW000000000SAMN37818525
cluster1_bin.308
GCA_039918715.1ContigJBDSHA000000000SAMN37818477
cluster1_bin.265
GCA_039919405.1ContigJBDSFT000000000SAMN37818444
cluster1_bin.234
GCA_039925885.1ContigJBDSYB000000000SAMN37818920
cluster1_bin.665
GCA_039927335.1ContigJBDSVI000000000SAMN37818849
cluster1_bin.600
GCA_039928775.1ContigJBDSSM000000000SAMN37818775
cluster1_bin.534
GCA_039933075.1ContigJBDTOW000000000SAMN38392910
cluster3_bin.183
GCA_040003405.1ContigJBDUCP000000000SAMN38393273
cluster4_bin.5
GCA_040003275.1ContigJBDUCY000000000SAMN38393282
cluster4_bin.58
GCA_040003015.1ContigJBDUDH000000000SAMN38393291
cluster4_bin.66
GCA_040002955.1ContigJBDUDL000000000SAMN38393295
cluster4_bin.7
GCA_040006335.1ContigJBDTXE000000000SAMN38393131
cluster4_bin.109
GCA_040005265.1ContigJBDTZF000000000SAMN38393184
cluster4_bin.16
GCA_039917295.1ContigJBDSJT000000000SAMN37818548
cluster1_bin.329
GCA_039916225.1ContigJBDSLU000000000SAMN37818601
cluster1_bin.377
GCA_039916465.1ContigJBDSLI000000000SAMN37818589
cluster1_bin.366
GCA_039915845.1ContigJBDSMO000000000SAMN37818621
cluster1_bin.395
GCA_039918575.1ContigJBDSHI000000000SAMN37818485
cluster1_bin.272
GCA_039919055.1ContigJBDSGL000000000SAMN37818462
cluster1_bin.251
GCA_039918975.1ContigJBDSGN000000000SAMN37818464
cluster1_bin.253
GCA_039934485.1ContigJBDTMB000000000SAMN37819285
cluster3_bin.116
GCA_039929425.1ContigJBDSRK000000000SAMN37818747
cluster1_bin.509
GCA_039929805.1ContigJBDSQO000000000SAMN37818725
cluster1_bin.49
GCA_039926485.1ContigJBDSWW000000000SAMN37818889
cluster1_bin.637
GCA_039925585.1ContigJBDSYQ000000000SAMN37818935
cluster1_bin.679
GCA_039925005.1ContigJBDSZR000000000SAMN37818962
cluster1_bin.90
GCA_039925205.1ContigJBDSZJ000000000SAMN37818954
cluster1_bin.83
GCA_039925145.1ContigJBDSZL000000000SAMN37818956
cluster1_bin.85
GCA_039933755.1ContigJBDTNN000000000SAMN38392875
cluster3_bin.151
GCA_039932395.1ContigJBDTQB000000000SAMN38392942
cluster3_bin.211
GCA_039916365.1ContigJBDSLN000000000SAMN37818594
cluster1_bin.370
GCA_039920145.1ContigJBDSEH000000000SAMN37818406
cluster1_bin.20
GCA_039936395.1ContigJBDTIL000000000SAMN37819191
cluster2_bin.298
GCA_040002475.1ContigJBDUEJ000000000SAMN38393319
cluster4_bin.92
GCA_040003345.1ContigJBDUCR000000000SAMN38393275
cluster4_bin.51
GCA_040003455.1ContigJBDUCM000000000SAMN38393270
cluster4_bin.47
GCA_040003675.1ContigJBDUCC000000000SAMN38393260
cluster4_bin.38
GCA_040003695.1ContigJBDUCB000000000SAMN38393259
cluster4_bin.37
GCA_040004775.1ContigJBDUAD000000000SAMN38393208
cluster4_bin.182
GCA_040004575.1ContigJBDUAQ000000000SAMN38393222
cluster4_bin.195
GCA_040005385.1ContigJBDTZC000000000SAMN38393181
cluster4_bin.156
GCA_040005515.1ContigJBDTYQ000000000SAMN38393169
cluster4_bin.143
GCA_040005695.1ContigJBDTYL000000000SAMN38393164
cluster4_bin.139
GCA_040006535.1ContigJBDTWU000000000SAMN38393121
cluster4_bin.1
GCA_040005935.1ContigJBDTXZ000000000SAMN38393152
cluster4_bin.128
GCA_039932435.1ContigJBDTPZ000000000SAMN38392940
cluster3_bin.21
GCA_039932095.1ContigJBDTQR000000000SAMN38392959
cluster3_bin.227
GCA_039931455.1ContigJBDTRX000000000SAMN38392992
cluster3_bin.257
GCA_039931735.1ContigJBDTRJ000000000SAMN38392977
cluster3_bin.243
GCA_039930405.1ContigJBDTTW000000000SAMN38393044
cluster3_bin.305
GCA_039930725.1ContigJBDTTG000000000SAMN38393028
cluster3_bin.290
GCA_039930945.1ContigJBDTSW000000000SAMN38393018
cluster3_bin.281
GCA_039933735.1ContigJBDTNM000000000SAMN38392874
cluster3_bin.150
GCA_039933415.1ContigJBDTOD000000000SAMN38392891
cluster3_bin.166
GCA_039933255.1ContigJBDTOM000000000SAMN38392900
cluster3_bin.174
GCA_039934235.1ContigJBDTMO000000000SAMN38392849
cluster3_bin.128
GCA_039934095.1ContigJBDTMV000000000SAMN38392856
cluster3_bin.134
GCA_039934135.1ContigJBDTMT000000000SAMN38392854
cluster3_bin.132
SRA Data Details
ParameterValue
Data volume, Gbases524
Data volume, Tbytes0.17

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