ID 1088550 - BioProject

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Accession: PRJNA1088550 ID: 1088550

Carbapenem-resistant Enterobacterales from a New York City Hospital

Carbapenem-resistant Enterobacterales from clinical cultures collected between 2009-2018 at a New York City hospital that underwent short and long-range sequencing and hybrid assembly

Accession	PRJNA1088550
Data Type	Genome sequencing
Scope	Multispecies
Grants	"Elucidating transmission of plasmids harboring blaKPC among carbapenem-resistant Enterobacteriaceae using long-range sequencing" (Grant ID K23 AI137316, National Institute of Allergy and Infectious Diseases Extramural Activities) "Operationalizing wastewater-based surveillance of multidrug-resistant bacteria" (Grant ID K99 AI163348, National Institute of Allergy and Infectious Diseases Extramural Activities) "Carbapenem-resistant bacterial colonization and infection after liver transplant" (Grant ID R01 AI116939, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 15-Mar-2024 Columbia University Medical Center
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	393
SRA Experiments	706
Other datasets
BioSample	393
Assembly	393

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

393
393

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_040565775.1	JBBGAW000000000	SAMN40518096	NCA1	Citrobacter amalonaticus
GCA_040563905.1	JBBFVM000000000	SAMN40477203	ST563CA1	Citrobacter amalonaticus
GCA_040567195.1	JBEEBN000000000	SAMN08720179	KP0924	Citrobacter braakii
GCA_040566075.1	JBBGAJ000000000	SAMN40518082	NCFA1	Citrobacter farmeri
GCA_040567155.1	JBEEBL000000000	SAMN08720181	NR0212	Citrobacter freundii
GCA_040567135.1	JBEDVA000000000	SAMN08720180	NR0091	Citrobacter freundii
GCA_040565955.1	JBBGAN000000000	SAMN40518086	NCFR1	Citrobacter freundii
GCA_040562885.1	JBBFTO000000000	SAMN40477254	ST22CFR2	Citrobacter freundii
GCA_040562705.1	JBBFTH000000000	SAMN40477261	ST22CFR3	Citrobacter freundii
GCA_040562525.1	JBBFSY000000000	SAMN40477270	ST22CFR4	Citrobacter freundii
GCA_040561705.1	JBBFRI000000000	SAMN40477312	ST91CFR1	Citrobacter freundii
GCA_040559865.1	JBBFOQ000000000	SAMN40477382	ST22CFR7	Citrobacter freundii
GCA_040581085.1	JBBFQA000000000	SAMN40477346	ST22CFR5	Citrobacter freundii
GCA_040580885.1	JBBFPC000000000	SAMN40477370	ST22CFR6	Citrobacter freundii
GCA_040567235.1	JBEEBP000000000	SAMN08720182	KP0890	Citrobacter koseri
GCA_040566455.1	JBBFZP000000000	SAMN40518062	NCP1	Citrobacter portucalensis
GCA_040562865.1	JBBFTL000000000	SAMN40477257	ST137ECL3	Enterobacter cloacae
GCA_040562805.1	JBBFTK000000000	SAMN40477258	ST452ECL1	Enterobacter cloacae
GCA_040563085.1	JBBFTW000000000	SAMN40477246	ST137ECL2	Enterobacter cloacae
GCA_040565195.1	JBBFXW000000000	SAMN40477141	ST137ECL1	Enterobacter cloacae
GCA_040564655.1	JBBFWY000000000	SAMN40477165	ST456ECL1	Enterobacter cloacae
GCA_040564555.1	JBBFWS000000000	SAMN40477171	ST171EH1	Enterobacter hormaechei
GCA_040564485.1	JBBFWQ000000000	SAMN40477173	ST171EH2	Enterobacter hormaechei
GCA_040564405.1	JBBFWJ000000000	SAMN40477180	ST171EH3	Enterobacter hormaechei
GCA_040564325.1	JBBFWK000000000	SAMN40477179	EC459EH1	Enterobacter hormaechei
GCA_040564305.1	JBBFWG000000000	SAMN40477183	ST171EH4	Enterobacter hormaechei
GCA_040563805.1	JBBFVJ000000000	SAMN40477206	ST918EH1	Enterobacter hormaechei
GCA_040563685.1	JBBFVC000000000	SAMN40477214	ST171EH7	Enterobacter hormaechei
GCA_040564235.1	JBBFWD000000000	SAMN40477186	ST171EH5	Enterobacter hormaechei
GCA_040563985.1	JBBFVR000000000	SAMN40477198	ST171EH6	Enterobacter hormaechei
GCA_040565085.1	JBBFXT000000000	SAMN40477144	ST831EH1	Enterobacter hormaechei
GCA_040565035.1	JBBFXP000000000	SAMN40477148	ST90EH1	Enterobacter hormaechei
GCA_040565795.1	JBBGAV000000000	SAMN40518095	ST597EH1	Enterobacter hormaechei
GCA_040563065.1	JBBFTX000000000	SAMN40477245	ST171EH9	Enterobacter hormaechei
GCA_040563025.1	JBBFTV000000000	SAMN40477247	ST171EH10	Enterobacter hormaechei
GCA_040563005.1	JBBFTU000000000	SAMN40477248	ST171EH11	Enterobacter hormaechei
GCA_040563585.1	JBBFUX000000000	SAMN40477219	ST106EH1	Enterobacter hormaechei
GCA_040562745.1	JBBFTJ000000000	SAMN40477259	ST171EH12	Enterobacter hormaechei
GCA_040562725.1	JBBFTF000000000	SAMN40477263	ST171EH13	Enterobacter hormaechei
GCA_040563625.1	JBBFUZ000000000	SAMN40477217	ST171EH8	Enterobacter hormaechei
GCA_040562825.1	JBBFTN000000000	SAMN40477255	ST88EH1	Enterobacter hormaechei
GCA_040562685.1	JBBFTC000000000	SAMN40477266	ST171EH14	Enterobacter hormaechei
GCA_040561805.1	JBBFRN000000000	SAMN40477307	ST171EH30	Enterobacter hormaechei
GCA_040561785.1	JBBFRM000000000	SAMN40477308	ST171EH31	Enterobacter hormaechei
GCA_040562545.1	JBBFSX000000000	SAMN40477271	ST171EH15	Enterobacter hormaechei
GCA_040562125.1	JBBFSC000000000	SAMN40477292	ST171EH25	Enterobacter hormaechei
GCA_040562485.1	JBBFSQ000000000	SAMN40477278	ST78EH2	Enterobacter hormaechei
GCA_040562505.1	JBBFSV000000000	SAMN40477273	ST171EH16	Enterobacter hormaechei
GCA_040562465.1	JBBFSR000000000	SAMN40477277	ST171EH20	Enterobacter hormaechei
GCA_040562445.1	JBBFSU000000000	SAMN40477274	ST171EH17	Enterobacter hormaechei
GCA_040562425.1	JBBFSS000000000	SAMN40477276	ST171EH19	Enterobacter hormaechei
GCA_040562405.1	JBBFST000000000	SAMN40477275	ST171EH18	Enterobacter hormaechei
GCA_040562385.1	JBBFSO000000000	SAMN40477280	ST171EH21	Enterobacter hormaechei
GCA_040562365.1	JBBFSP000000000	SAMN40477279	ST78EH3	Enterobacter hormaechei
GCA_040562345.1	JBBFSL000000000	SAMN40477283	ST171EH24	Enterobacter hormaechei
GCA_040562325.1	JBBFSN000000000	SAMN40477281	ST171EH22	Enterobacter hormaechei
GCA_040562305.1	JBBFSM000000000	SAMN40477282	ST171EH23	Enterobacter hormaechei
GCA_040566135.1	JBBGAE000000000	SAMN40518077	EC459EH2	Enterobacter hormaechei
GCA_040566105.1	JBBGAK000000000	SAMN40518083	ST171EH37	Enterobacter hormaechei
GCA_040566775.1	JBBFZI000000000	SAMN40518055	ST141EH1	Enterobacter hormaechei
GCA_040566675.1	JBBFZN000000000	SAMN40518060	ST171EH36	Enterobacter hormaechei
GCA_040559905.1	JBBFOU000000000	SAMN40477378	ST171EH35	Enterobacter hormaechei
GCA_040561295.1	JBBFQJ000000000	SAMN40477337	ST171EH32	Enterobacter hormaechei
GCA_040561265.1	JBBFQI000000000	SAMN40477338	ST171EH33	Enterobacter hormaechei
GCA_040561195.1	JBBFQE000000000	SAMN40477342	ST78EH5	Enterobacter hormaechei
GCA_040559145.1	JBBFNR000000000	SAMN40477407	ST145EH1	Enterobacter hormaechei
GCA_040559125.1	JBBFNS000000000	SAMN40477406	ST134EH1	Enterobacter hormaechei
GCA_040593525.1	JBEXCP000000000	SAMN08720193	458	Enterobacter hormaechei
GCA_040593415.1	JBEXCN000000000	SAMN08720189	171	Enterobacter hormaechei
GCA_040593375.1	JBEXCL000000000	SAMN08720192	171	Enterobacter hormaechei
GCA_040593365.1	JBEXCM000000000	SAMN08720190	171	Enterobacter hormaechei
GCA_040593545.1	JBEXCO000000000	SAMN08720191	171	Enterobacter hormaechei
GCA_040580925.1	JBBFPB000000000	SAMN40477371	ST171EH34	Enterobacter hormaechei
GCA_040565115.1	JBBFXV000000000	SAMN40477142	ST125EK1	Enterobacter kobei
GCA_040558965.1	JBBFNO000000000	SAMN40477410	ST167EC2	Escherichia coli
GCA_040561145.1	JBBFQB000000000	SAMN40477345	ST131EC3	Escherichia coli O25b:H4-ST131
GCA_040559805.1	JBBFOO000000000	SAMN40477384	ST131EC4	Escherichia coli O25b:H4-ST131
GCA_040565275.1	JBBFYD000000000	SAMN40477134	ST167EC1	Escherichia coli
GCA_040565815.1	JBBGAU000000000	SAMN40518094	ST8655EC1	Escherichia coli
GCA_040565715.1	JBBGAX000000000	SAMN40518097	ST1193EC2	Escherichia coli
GCA_040564045.1	JBBFVU000000000	SAMN40477195	ST127EC1	Escherichia coli
GCA_040564425.1	JBBFWM000000000	SAMN40477177	ST1193EC1	Escherichia coli
GCA_040561885.1	JBBFRR000000000	SAMN40477303	ST155EC1	Escherichia coli
GCA_040563165.1	JBBFUB000000000	SAMN40477241	ST131EC2	Escherichia coli O25b:H4-ST131
GCA_040566015.1	JBBGAM000000000	SAMN40518085	ST2285EC1	Escherichia coli
GCA_040565995.1	JBBGAL000000000	SAMN40518084	ST1859EC1	Escherichia coli
GCA_040567475.1	JBEECA000000000	SAMN08720194	131	Escherichia coli
GCA_040561645.1	JBBFRE000000000	SAMN40477316	ST93KA1	Klebsiella aerogenes
GCA_040558945.1	JBBFNP000000000	SAMN40477409	ST93KA2	Klebsiella aerogenes
GCA_040566975.1	JBEEBE000000000	SAMN08720183	NR3765	Klebsiella aerogenes
GCA_040561865.1	JBBFRP000000000	SAMN40477305	ST237KA2	Klebsiella aerogenes
GCA_040563745.1	JBBHES000000000	SAMN40477211	ST50KM1	Klebsiella michiganensis
GCA_040565895.1	JBBGAS000000000	SAMN40518091	ST167KM1	Klebsiella michiganensis
GCA_040566355.1	JBBFZV000000000	SAMN40518068	ST43KM1	Klebsiella michiganensis
GCA_040558955.1	JBBFNQ000000000	SAMN40477408	ST324KM1	Klebsiella michiganensis
GCA_040561405.1	JBBFQP000000000	SAMN40477331	ST363KM2	Klebsiella michiganensis
GCA_040561445.1	JBBFQQ000000000	SAMN40477330	ST106KO11	Klebsiella oxytoca
GCA_040561235.1	JBBFQG000000000	SAMN40477340	ST30KO2	Klebsiella oxytoca
GCA_040566915.1	JBBFYZ000000000	SAMN40518046	ST30KO3	Klebsiella oxytoca
GCA_040565235.1	JBBFYB000000000	SAMN40477136	ST30KO1	Klebsiella oxytoca
GCA_040564465.1	JBBFWN000000000	SAMN40477176	ST176KO1	Klebsiella oxytoca
GCA_040564445.1	JBBFWO000000000	SAMN40477175	ST258KP66	Klebsiella pneumoniae
GCA_040564525.1	JBBFWR000000000	SAMN40477172	ST258KP64	Klebsiella pneumoniae
GCA_040564495.1	JBBFWP000000000	SAMN40477174	ST258KP65	Klebsiella pneumoniae
GCA_040564285.1	JBBFWF000000000	SAMN40477184	ST258KP70	Klebsiella pneumoniae
GCA_040564265.1	JBBFWE000000000	SAMN40477185	ST258KP71	Klebsiella pneumoniae
GCA_040564225.1	JBBFWA000000000	SAMN40477189	ST258KP73	Klebsiella pneumoniae
GCA_040564385.1	JBBFWI000000000	SAMN40477181	ST258KP68	Klebsiella pneumoniae
GCA_040564365.1	JBBFWH000000000	SAMN40477182	ST258KP69	Klebsiella pneumoniae
GCA_040564345.1	JBBFWL000000000	SAMN40477178	ST258KP67	Klebsiella pneumoniae
GCA_040564605.1	JBBFWU000000000	SAMN40477169	ST258KP62	Klebsiella pneumoniae
GCA_040564585.1	JBBFWV000000000	SAMN40477168	ST258KP61	Klebsiella pneumoniae
GCA_040564535.1	JBBFWT000000000	SAMN40477170	ST258KP63	Klebsiella pneumoniae
GCA_040564915.1	JBBFXJ000000000	SAMN40477154	ST258KP51	Klebsiella pneumoniae
GCA_040564865.1	JBBFXI000000000	SAMN40477155	ST36KP1	Klebsiella pneumoniae
GCA_040564825.1	JBBFXH000000000	SAMN40477156	ST258KP52	Klebsiella pneumoniae
GCA_040564835.1	JBBFXG000000000	SAMN40477157	ST258KP53	Klebsiella pneumoniae
GCA_040564815.1	JBBFXE000000000	SAMN40477159	ST258KP56	Klebsiella pneumoniae
GCA_040564795.1	JBBFXF000000000	SAMN40477158	ST258KP54	Klebsiella pneumoniae
GCA_040564775.1	JBBFXD000000000	SAMN40477160	ST1084KP1	Klebsiella pneumoniae
GCA_040564705.1	JBBFXA000000000	SAMN40477163	ST258KP60	Klebsiella pneumoniae
GCA_040564715.1	JBBFXB000000000	SAMN40477162	ST258KP59	Klebsiella pneumoniae
GCA_040564725.1	JBBFXC000000000	SAMN40477161	ST258KP58	Klebsiella pneumoniae
GCA_040564685.1	JBBFWZ000000000	SAMN40477164	ST11KP1	Klebsiella pneumoniae
GCA_040564665.1	JBBFWW000000000	SAMN40477167	ST392KP3	Klebsiella pneumoniae
GCA_040563725.1	JBBFVD000000000	SAMN40477213	ST258KP90	Klebsiella pneumoniae
GCA_040563705.1	JBBFVE000000000	SAMN40477212	ST258KP89	Klebsiella pneumoniae
GCA_040563665.1	JBBFVB000000000	SAMN40477215	ST258KP91	Klebsiella pneumoniae
GCA_040563645.1	JBBFUY000000000	SAMN40477218	ST258KP93	Klebsiella pneumoniae
GCA_040563785.1	JBBFVG000000000	SAMN40477209	ST258KP88	Klebsiella pneumoniae
GCA_040563765.1	JBBFVF000000000	SAMN40477210	ST776KP1	Klebsiella pneumoniae
GCA_040563885.1	JBBFVL000000000	SAMN40477204	ST258KP84	Klebsiella pneumoniae
GCA_040563865.1	JBBFVK000000000	SAMN40477205	ST392KP4	Klebsiella pneumoniae
GCA_040563845.1	JBBFVH000000000	SAMN40477208	ST258KP87	Klebsiella pneumoniae
GCA_040563825.1	JBBFVI000000000	SAMN40477207	ST258KP85	Klebsiella pneumoniae
GCA_040564025.1	JBBFVQ000000000	SAMN40477199	ST2167KP1	Klebsiella pneumoniae
GCA_040564005.1	JBBFVS000000000	SAMN40477197	ST1471KP3	Klebsiella pneumoniae
GCA_040563965.1	JBBFVP000000000	SAMN40477200	ST258KP80	Klebsiella pneumoniae
GCA_040563945.1	JBBFVO000000000	SAMN40477201	ST258KP81	Klebsiella pneumoniae
GCA_040563925.1	JBBFVN000000000	SAMN40477202	ST258KP83	Klebsiella pneumoniae
GCA_040564195.1	JBBFWC000000000	SAMN40477187	ST299KP2	Klebsiella pneumoniae
GCA_040564185.1	JBBFWB000000000	SAMN40477188	ST258KP72	Klebsiella pneumoniae
GCA_040564165.1	JBBFVY000000000	SAMN40477191	ST258KP75	Klebsiella pneumoniae
GCA_040564145.1	JBBFVZ000000000	SAMN40477190	ST258KP74	Klebsiella pneumoniae
GCA_040564125.1	JBBFVW000000000	SAMN40477193	ST258KP77	Klebsiella pneumoniae
GCA_040564105.1	JBBFVX000000000	SAMN40477192	ST258KP76	Klebsiella pneumoniae
GCA_040564085.1	JBBFVV000000000	SAMN40477194	ST258KP78	Klebsiella pneumoniae
GCA_040564065.1	JBBFVT000000000	SAMN40477196	ST258KP79	Klebsiella pneumoniae
GCA_040565215.1	JBBFXZ000000000	SAMN40477138	ST258KP32	Klebsiella pneumoniae
GCA_040565255.1	JBBFYA000000000	SAMN40477137	ST258KP31	Klebsiella pneumoniae
GCA_040565755.1	JBBGAY000000000	SAMN40518098	ST258KP227	Klebsiella pneumoniae
GCA_040565735.1	JBBFYY000000000	SAMN40477113	ST258KP1	Klebsiella pneumoniae
GCA_040565145.1	JBBFXY000000000	SAMN40477139	ST258KP34	Klebsiella pneumoniae
GCA_040565135.1	JBBFXU000000000	SAMN40477143	ST258KP44	Klebsiella pneumoniae
GCA_040565155.1	JBBFXX000000000	SAMN40477140	ST258KP35	Klebsiella pneumoniae
GCA_040565055.1	JBBFXS000000000	SAMN40477145	ST258KP45	Klebsiella pneumoniae
GCA_040565015.1	JBBFXQ000000000	SAMN40477147	ST258KP47	Klebsiella pneumoniae
GCA_040565025.1	JBBFXR000000000	SAMN40477146	ST258KP46	Klebsiella pneumoniae
GCA_040564995.1	JBBFXO000000000	SAMN40477149	ST258KP48	Klebsiella pneumoniae
GCA_040564935.1	JBBFXN000000000	SAMN40477150	ST299KP1	Klebsiella pneumoniae
GCA_040564955.1	JBBFXM000000000	SAMN40477151	ST258KP49	Klebsiella pneumoniae
GCA_040564895.1	JBBFXK000000000	SAMN40477153	ST258KP50	Klebsiella pneumoniae
GCA_040565855.1	JBBGAT000000000	SAMN40518092	ST258KP226	Klebsiella pneumoniae
GCA_040566415.1	JBBFZR000000000	SAMN40518064	ST258KP211	Klebsiella pneumoniae
GCA_040566395.1	JBBFZT000000000	SAMN40518066	ST258KP213	Klebsiella pneumoniae
GCA_040566375.1	JBBFZS000000000	SAMN40518065	ST258KP212	Klebsiella pneumoniae
GCA_040566035.1	JBBGAI000000000	SAMN40518081	ST258KP223	Klebsiella pneumoniae
GCA_040565915.1	JBBGAQ000000000	SAMN40518089	ST258KP225	Klebsiella pneumoniae
GCA_040565695.1	JBBFYX000000000	SAMN40477114	ST258KP4	Klebsiella pneumoniae
GCA_040565675.1	JBBFYV000000000	SAMN40477116	ST258KP7	Klebsiella pneumoniae
GCA_040565655.1	JBBFYU000000000	SAMN40477117	ST258KP10	Klebsiella pneumoniae
GCA_040565635.1	JBBFYW000000000	SAMN40477115	ST258KP5	Klebsiella pneumoniae
GCA_040565615.1	JBBFYT000000000	SAMN40477118	ST258KP11	Klebsiella pneumoniae
GCA_040565595.1	JBBFYS000000000	SAMN40477119	ST258KP13	Klebsiella pneumoniae
GCA_040565575.1	JBBFYQ000000000	SAMN40477121	ST258KP16	Klebsiella pneumoniae
GCA_040565555.1	JBBFYO000000000	SAMN40477123	ST258KP19	Klebsiella pneumoniae
GCA_040565535.1	JBBFYR000000000	SAMN40477120	ST258KP15	Klebsiella pneumoniae
GCA_040565515.1	JBBFYP000000000	SAMN40477122	ST258KP18	Klebsiella pneumoniae
GCA_040565495.1	JBBFYM000000000	SAMN40477125	ST258KP21	Klebsiella pneumoniae
GCA_040565475.1	JBBFYN000000000	SAMN40477124	ST258KP20	Klebsiella pneumoniae
GCA_040565455.1	JBBFYL000000000	SAMN40477126	ST258KP22	Klebsiella pneumoniae
GCA_040565435.1	JBBFYJ000000000	SAMN40477128	ST258KP24	Klebsiella pneumoniae
GCA_040565415.1	JBBFYK000000000	SAMN40477127	ST258KP23	Klebsiella pneumoniae
GCA_040565395.1	JBBFYI000000000	SAMN40477129	ST258KP25	Klebsiella pneumoniae
GCA_040565375.1	JBBFYG000000000	SAMN40477131	ST258KP27	Klebsiella pneumoniae
GCA_040565355.1	JBBFYH000000000	SAMN40477130	ST258KP26	Klebsiella pneumoniae
GCA_040565335.1	JBBFYF000000000	SAMN40477132	ST258KP28	Klebsiella pneumoniae
GCA_040565285.1	JBBFYC000000000	SAMN40477135	ST258KP30	Klebsiella pneumoniae
GCA_040565295.1	JBBFYE000000000	SAMN40477133	ST258KP29	Klebsiella pneumoniae
GCA_040561845.1	JBBFRQ000000000	SAMN40477304	ST258KP140	Klebsiella pneumoniae
GCA_040561825.1	JBBFRO000000000	SAMN40477306	ST258KP141	Klebsiella pneumoniae
GCA_040561765.1	JBBFRL000000000	SAMN40477309	ST258KP143	Klebsiella pneumoniae
GCA_040561745.1	JBBFRK000000000	SAMN40477310	ST258KP144	Klebsiella pneumoniae
GCA_040561725.1	JBBFRJ000000000	SAMN40477311	ST258KP145	Klebsiella pneumoniae
GCA_040561685.1	JBBFRH000000000	SAMN40477313	ST258KP146	Klebsiella pneumoniae
GCA_040562165.1	JBBFSD000000000	SAMN40477291	ST258KP130	Klebsiella pneumoniae
GCA_040562145.1	JBBFSB000000000	SAMN40477293	ST258KP131	Klebsiella pneumoniae
GCA_040562055.1	JBBFRY000000000	SAMN40477296	ST258KP133	Klebsiella pneumoniae
GCA_040562035.1	JBBFRX000000000	SAMN40477297	ST258KP134	Klebsiella pneumoniae
GCA_040561985.1	JBBFRW000000000	SAMN40477298	ST258KP135	Klebsiella pneumoniae
GCA_040562005.1	JBBFRZ000000000	SAMN40477295	ST258KP132	Klebsiella pneumoniae
GCA_040561965.1	JBBFRV000000000	SAMN40477299	ST258KP136	Klebsiella pneumoniae
GCA_040561945.1	JBBFRU000000000	SAMN40477300	ST258KP137	Klebsiella pneumoniae
GCA_040561925.1	JBBFRT000000000	SAMN40477301	ST258KP138	Klebsiella pneumoniae
GCA_040561905.1	JBBFRS000000000	SAMN40477302	ST258KP139	Klebsiella pneumoniae
GCA_040562285.1	JBBFSJ000000000	SAMN40477285	ST258KP127	Klebsiella pneumoniae
GCA_040562265.1	JBBFSI000000000	SAMN40477286	ST258KP128	Klebsiella pneumoniae
GCA_040562245.1	JBBFSK000000000	SAMN40477284	ST70KP1	Klebsiella pneumoniae
GCA_040562225.1	JBBFSH000000000	SAMN40477287	ST258KP129	Klebsiella pneumoniae
GCA_040563145.1	JBBFUC000000000	SAMN40477240	ST258KP113	Klebsiella pneumoniae
GCA_040563125.1	JBBFUA000000000	SAMN40477242	ST147KP1	Klebsiella pneumoniae
GCA_040563105.1	JBBFTZ000000000	SAMN40477243	ST45KP1	Klebsiella pneumoniae
GCA_040563045.1	JBBFTY000000000	SAMN40477244	ST258KP114	Klebsiella pneumoniae
GCA_040562965.1	JBBFTR000000000	SAMN40477251	ST258KP117	Klebsiella pneumoniae
GCA_040562985.1	JBBFTQ000000000	SAMN40477252	ST258KP118	Klebsiella pneumoniae
GCA_040562945.1	JBBFTT000000000	SAMN40477249	ST258KP115	Klebsiella pneumoniae
GCA_040562925.1	JBBFTS000000000	SAMN40477250	ST258KP116	Klebsiella pneumoniae
GCA_040562905.1	JBBFTP000000000	SAMN40477253	ST258KP119	Klebsiella pneumoniae
GCA_040563565.1	JBBFUW000000000	SAMN40477220	ST258KP95	Klebsiella pneumoniae
GCA_040563545.1	JBBFUS000000000	SAMN40477224	ST258KP98	Klebsiella pneumoniae
GCA_040563515.1	JBBFUV000000000	SAMN40477221	ST1471KP4	Klebsiella pneumoniae
GCA_040563505.1	JBBFUT000000000	SAMN40477223	ST258KP97	Klebsiella pneumoniae
GCA_040563485.1	JBBFUU000000000	SAMN40477222	ST258KP96	Klebsiella pneumoniae
GCA_040563465.1	JBBFUR000000000	SAMN40477225	ST258KP99	Klebsiella pneumoniae
GCA_040563445.1	JBBFUO000000000	SAMN40477228	ST258KP102	Klebsiella pneumoniae
GCA_040563425.1	JBBFUP000000000	SAMN40477227	ST258KP101	Klebsiella pneumoniae
GCA_040563385.1	JBBFUQ000000000	SAMN40477226	ST294KP1	Klebsiella pneumoniae
GCA_040563365.1	JBBFUM000000000	SAMN40477230	ST258KP103	Klebsiella pneumoniae
GCA_040563345.1	JBBFUJ000000000	SAMN40477233	ST258KP106	Klebsiella pneumoniae
GCA_040563325.1	JBBFUL000000000	SAMN40477231	ST258KP104	Klebsiella pneumoniae
GCA_040563295.1	JBBFUK000000000	SAMN40477232	ST258KP105	Klebsiella pneumoniae
GCA_040563285.1	JBBFUI000000000	SAMN40477234	ST258KP107	Klebsiella pneumoniae
GCA_040563265.1	JBBFUH000000000	SAMN40477235	ST258KP108	Klebsiella pneumoniae
GCA_040563245.1	JBBFUG000000000	SAMN40477236	ST258KP109	Klebsiella pneumoniae
GCA_040563225.1	JBBFUF000000000	SAMN40477237	ST418KP1	Klebsiella pneumoniae
GCA_040563205.1	JBBFUE000000000	SAMN40477238	ST258KP111	Klebsiella pneumoniae
GCA_040563175.1	JBBFUD000000000	SAMN40477239	ST258KP112	Klebsiella pneumoniae
GCA_040562585.1	JBBFSW000000000	SAMN40477272	ST258KP126	Klebsiella pneumoniae
GCA_040562565.1	JBBFSZ000000000	SAMN40477269	ST258KP125	Klebsiella pneumoniae
GCA_040562605.1	JBBFTD000000000	SAMN40477265	ST14KP1	Klebsiella pneumoniae
GCA_040562645.1	JBBFTB000000000	SAMN40477267	ST258KP124	Klebsiella pneumoniae
GCA_040562665.1	JBBFTE000000000	SAMN40477264	ST258KP123	Klebsiella pneumoniae
GCA_040563605.1	JBBFVA000000000	SAMN40477216	ST258KP92	Klebsiella pneumoniae
GCA_040562845.1	JBBFTM000000000	SAMN40477256	ST258KP120	Klebsiella pneumoniae
GCA_040562785.1	JBBFTG000000000	SAMN40477262	ST258KP122	Klebsiella pneumoniae
GCA_040562765.1	JBBFTI000000000	SAMN40477260	ST258KP121	Klebsiella pneumoniae
GCA_040566875.1	JBBFZC000000000	SAMN40518049	ST3359KP6	Klebsiella pneumoniae
GCA_040566855.1	JBBFZD000000000	SAMN40518050	ST258KP203	Klebsiella pneumoniae
GCA_040566815.1	JBBFZE000000000	SAMN40518051	ST29KP1	Klebsiella pneumoniae
GCA_040566835.1	JBBFZH000000000	SAMN40518054	ST3359KP7	Klebsiella pneumoniae
GCA_040566795.1	JBBFZJ000000000	SAMN40518056	ST392KP9	Klebsiella pneumoniae
GCA_040566935.1	JBBFZA000000000	SAMN40518047	ST45KP2	Klebsiella pneumoniae
GCA_040566995.1	JBEEBD000000000	SAMN08720226	258	Klebsiella pneumoniae
GCA_040567035.1	JBEEBF000000000	SAMN08720216	258	Klebsiella pneumoniae
GCA_040566655.1	JBBFZL000000000	SAMN40518058	ST258KP207	Klebsiella pneumoniae
GCA_040566635.1	JBBFZM000000000	SAMN40518059	ST258KP208	Klebsiella pneumoniae
GCA_040566755.1	JBBFZF000000000	SAMN40518052	ST258KP204	Klebsiella pneumoniae
GCA_040566735.1	JBBFZG000000000	SAMN40518053	ST258KP205	Klebsiella pneumoniae
GCA_040566715.1	JBBFZK000000000	SAMN40518057	ST258KP206	Klebsiella pneumoniae
GCA_040566335.1	JBBFZU000000000	SAMN40518067	ST258KP214	Klebsiella pneumoniae
GCA_040566315.1	JBBFZW000000000	SAMN40518069	ST258KP215	Klebsiella pneumoniae
GCA_040566295.1	JBBFZX000000000	SAMN40518070	ST70KP2	Klebsiella pneumoniae
GCA_040566275.1	JBBFZY000000000	SAMN40518071	ST258KP216	Klebsiella pneumoniae
GCA_040566235.1	JBBFZZ000000000	SAMN40518072	ST258KP217	Klebsiella pneumoniae
GCA_040566495.1	JBBFZO000000000	SAMN40518061	ST258KP209	Klebsiella pneumoniae
GCA_040566465.1	JBBFZQ000000000	SAMN40518063	ST258KP210	Klebsiella pneumoniae
GCA_040565975.1	JBBGAO000000000	SAMN40518087	ST258KP224	Klebsiella pneumoniae
GCA_040566095.1	JBBGAH000000000	SAMN40518080	ST258KP222	Klebsiella pneumoniae
GCA_040566215.1	JBBGAC000000000	SAMN40518075	ST258KP219	Klebsiella pneumoniae
GCA_040566195.1	JBBGAD000000000	SAMN40518076	ST258KP220	Klebsiella pneumoniae
GCA_040566175.1	JBBGAB000000000	SAMN40518074	ST258KP218	Klebsiella pneumoniae
GCA_040566155.1	JBBGAF000000000	SAMN40518078	ST258KP221	Klebsiella pneumoniae
GCA_040567455.1	JBEECC000000000	SAMN08720238	1502	Klebsiella pneumoniae
GCA_040567435.1	JBEEBZ000000000	SAMN08720198	17	Klebsiella pneumoniae
GCA_040567415.1	JBEEBY000000000	SAMN08720210	258	Klebsiella pneumoniae
GCA_040567395.1	JBEEBW000000000	SAMN08720214	258	Klebsiella pneumoniae
GCA_040567375.1	JBEEBX000000000	SAMN08720211	258	Klebsiella pneumoniae
GCA_040567355.1	JBEEBT000000000	SAMN08720236	1481	Klebsiella pneumoniae
GCA_040567335.1	JBEEBS000000000	SAMN08720217	258	Klebsiella pneumoniae
GCA_040567315.1	JBEEBV000000000	SAMN08720215	258	Klebsiella pneumoniae
GCA_040567295.1	JBEEBU000000000	SAMN08720233	392	Klebsiella pneumoniae
GCA_040567275.1	JBEEBR000000000	SAMN08720218	258	Klebsiella pneumoniae
GCA_040567255.1	JBEEBO000000000	SAMN08720221	258	Klebsiella pneumoniae
GCA_040567635.1	JBEECI000000000	SAMN08720202	258	Klebsiella pneumoniae
GCA_040567605.1	JBEECG000000000	SAMN08720204	258	Klebsiella pneumoniae
GCA_040567595.1	JBEECJ000000000	SAMN08720200	258	Klebsiella pneumoniae
GCA_040567575.1	JBEECF000000000	SAMN08720205	258	Klebsiella pneumoniae
GCA_040567555.1	JBEECH000000000	SAMN08720203	258	Klebsiella pneumoniae
GCA_040567535.1	JBEECE000000000	SAMN08720231	392	Klebsiella pneumoniae
GCA_040567515.1	JBEECD000000000	SAMN08720206	258	Klebsiella pneumoniae
GCA_040567495.1	JBEECB000000000	SAMN08720208	258	Klebsiella pneumoniae
GCA_040567205.1	JBEEBQ000000000	SAMN08720220	258	Klebsiella pneumoniae
GCA_040567175.1	JBEEBM000000000	SAMN08720222	258	Klebsiella pneumoniae
GCA_040567075.1	JBEEBH000000000	SAMN08720224	258	Klebsiella pneumoniae
GCA_040561175.1	JBBFQC000000000	SAMN40477344	ST48KP1	Klebsiella pneumoniae
GCA_040561075.1	JBBFPY000000000	SAMN40477348	ST11KP4	Klebsiella pneumoniae
GCA_040560995.1	JBBFPT000000000	SAMN40477353	ST258KP168	Klebsiella pneumoniae
GCA_040561045.1	JBBFPX000000000	SAMN40477349	ST258KP164	Klebsiella pneumoniae
GCA_040561375.1	JBBFQN000000000	SAMN40477333	ST11KP2	Klebsiella pneumoniae
GCA_040561425.1	JBBFQM000000000	SAMN40477334	ST258KP158	Klebsiella pneumoniae
GCA_040561315.1	JBBFQK000000000	SAMN40477336	ST258KP160	Klebsiella pneumoniae
GCA_040561345.1	JBBFQL000000000	SAMN40477335	ST258KP159	Klebsiella pneumoniae
GCA_040561325.1	JBBFQH000000000	SAMN40477339	ST258KP161	Klebsiella pneumoniae
GCA_040561185.1	JBBFQD000000000	SAMN40477343	ST11KP3	Klebsiella pneumoniae
GCA_040561625.1	JBBFRG000000000	SAMN40477314	ST258KP147	Klebsiella pneumoniae
GCA_040561605.1	JBBFRD000000000	SAMN40477317	ST258KP148	Klebsiella pneumoniae
GCA_040561585.1	JBBFQV000000000	SAMN40477325	ST258KP154	Klebsiella pneumoniae
GCA_040561565.1	JBBFQU000000000	SAMN40477326	ST258KP155	Klebsiella pneumoniae
GCA_040561545.1	JBBFRB000000000	SAMN40477319	ST258KP149	Klebsiella pneumoniae
GCA_040561525.1	JBBFRC000000000	SAMN40477318	ST1497KP1	Klebsiella pneumoniae
GCA_040561505.1	JBBFQT000000000	SAMN40477327	ST392KP5	Klebsiella pneumoniae
GCA_040561485.1	JBBFQR000000000	SAMN40477329	ST258KP157	Klebsiella pneumoniae
GCA_040561465.1	JBBFQS000000000	SAMN40477328	ST258KP156	Klebsiella pneumoniae
GCA_040560775.1	JBBFPL000000000	SAMN40477361	ST34KP1	Klebsiella pneumoniae
GCA_040560785.1	JBBFPM000000000	SAMN40477360	ST258KP173	Klebsiella pneumoniae
GCA_040560765.1	JBBFPJ000000000	SAMN40477363	ST258KP175	Klebsiella pneumoniae
GCA_040560795.1	JBBFPO000000000	SAMN40477358	ST340KP2	Klebsiella pneumoniae
GCA_040560985.1	JBBFPS000000000	SAMN40477354	ST258KP169	Klebsiella pneumoniae
GCA_040561215.1	JBBFQF000000000	SAMN40477341	ST258KP162	Klebsiella pneumoniae
GCA_040560495.1	JBBFPE000000000	SAMN40477368	ST11KP5	Klebsiella pneumoniae
GCA_040560455.1	JBBFOY000000000	SAMN40477374	ST258KP179	Klebsiella pneumoniae
GCA_040560485.1	JBBFPD000000000	SAMN40477369	ST1471KP5	Klebsiella pneumoniae
GCA_040560465.1	JBBFPF000000000	SAMN40477367	ST3359KP1	Klebsiella pneumoniae
GCA_040560475.1	JBBFPG000000000	SAMN40477366	ST258KP177	Klebsiella pneumoniae
GCA_040559735.1	JBBFOI000000000	SAMN40477390	ST258KP189	Klebsiella pneumoniae
GCA_040559705.1	JBBFOK000000000	SAMN40477388	ST392KP7	Klebsiella pneumoniae
GCA_040559685.1	JBBFOJ000000000	SAMN40477389	ST258KP187	Klebsiella pneumoniae
GCA_040559665.1	JBBFOG000000000	SAMN40477392	ST258KP191	Klebsiella pneumoniae
GCA_040559675.1	JBBFOH000000000	SAMN40477391	ST258KP190	Klebsiella pneumoniae
GCA_040559575.1	JBBFOD000000000	SAMN40477395	ST258KP196	Klebsiella pneumoniae
GCA_040559605.1	JBBFOB000000000	SAMN40477397	ST392KP8	Klebsiella pneumoniae
GCA_040559585.1	JBBFOF000000000	SAMN40477393	ST258KP193	Klebsiella pneumoniae
GCA_040559595.1	JBBFOC000000000	SAMN40477396	NKP1	Klebsiella pneumoniae
GCA_040559565.1	JBBFOE000000000	SAMN40477394	ST258KP194	Klebsiella pneumoniae
GCA_040559795.1	JBBFON000000000	SAMN40477385	ST258KP184	Klebsiella pneumoniae
GCA_040559775.1	JBBFOL000000000	SAMN40477387	ST258KP186	Klebsiella pneumoniae
GCA_040559765.1	JBBFOM000000000	SAMN40477386	ST258KP185	Klebsiella pneumoniae
GCA_040559785.1	JBBFOP000000000	SAMN40477383	ST258KP183	Klebsiella pneumoniae
GCA_040559455.1	JBBFNY000000000	SAMN40477400	ST3359KP4	Klebsiella pneumoniae
GCA_040559885.1	JBBFOT000000000	SAMN40477379	ST258KP182	Klebsiella pneumoniae
GCA_040559875.1	JBBFOR000000000	SAMN40477381	ST3359KP3	Klebsiella pneumoniae
GCA_040560005.1	JBBFOX000000000	SAMN40477375	ST258KP180	Klebsiella pneumoniae
GCA_040559975.1	JBBFOW000000000	SAMN40477376	ST392KP6	Klebsiella pneumoniae
GCA_040559965.1	JBBFOV000000000	SAMN40477377	ST258KP181	Klebsiella pneumoniae
GCA_040558925.1	JBBFNM000000000	SAMN40477412	ST258KP202	Klebsiella pneumoniae
GCA_040558935.1	JBBFNN000000000	SAMN40477411	ST258KP201	Klebsiella pneumoniae
GCA_040559175.1	JBBFNU000000000	SAMN40477404	ST258KP200	Klebsiella pneumoniae
GCA_040559425.1	JBBFOA000000000	SAMN40477398	ST258KP198	Klebsiella pneumoniae
GCA_040559385.1	JBBFNW000000000	SAMN40477402	ST3359KP5	Klebsiella pneumoniae
GCA_040559395.1	JBBFNX000000000	SAMN40477401	ST340KP3	Klebsiella pneumoniae
GCA_040559185.1	JBBFNT000000000	SAMN40477405	ST15KP1	Klebsiella pneumoniae
GCA_040559165.1	JBBFNV000000000	SAMN40477403	ST158KP1	Klebsiella pneumoniae
GCA_040581195.1	JBBFQX000000000	SAMN40477323	ST258KP152	Klebsiella pneumoniae
GCA_040581175.1	JBBFQZ000000000	SAMN40477321	ST258KP151	Klebsiella pneumoniae
GCA_040581155.1	JBBFQW000000000	SAMN40477324	ST258KP153	Klebsiella pneumoniae
GCA_040581125.1	JBBFQY000000000	SAMN40477322	ST76KP2	Klebsiella pneumoniae
GCA_040581115.1	JBBFRA000000000	SAMN40477320	ST258KP150	Klebsiella pneumoniae
GCA_040581065.1	JBBFPV000000000	SAMN40477351	ST258KP166	Klebsiella pneumoniae
GCA_040581045.1	JBBFPW000000000	SAMN40477350	ST258KP165	Klebsiella pneumoniae
GCA_040581025.1	JBBFPQ000000000	SAMN40477356	ST258KP171	Klebsiella pneumoniae
GCA_040580985.1	JBBFPU000000000	SAMN40477352	ST258KP167	Klebsiella pneumoniae
GCA_040581005.1	JBBFPR000000000	SAMN40477355	ST258KP170	Klebsiella pneumoniae
GCA_040580965.1	JBBFPN000000000	SAMN40477359	ST258KP172	Klebsiella pneumoniae
GCA_040580945.1	JBBFPK000000000	SAMN40477362	ST258KP174	Klebsiella pneumoniae
GCA_040580905.1	JBBFPH000000000	SAMN40477365	ST258KP176	Klebsiella pneumoniae
GCA_040580865.1	JBBFPA000000000	SAMN40477372	ST3359KP2	Klebsiella pneumoniae
GCA_040580845.1	JBBFOZ000000000	SAMN40477373	ST258KP178	Klebsiella pneumoniae
GCA_040593555.1	JBEXCQ000000000	SAMN08720234	681	Klebsiella variicola
GCA_040561135.1	JBBFPZ000000000	SAMN40477347	ST938KV1	Klebsiella variicola
GCA_040566895.1	JBBFZB000000000	SAMN40518048	ST3524KV1	Klebsiella variicola
GCA_040562085.1	JBBFSA000000000	SAMN40477294	ST597KV1	Klebsiella variicola
GCA_040564905.1	JBBFXL000000000	SAMN40477152	ST357KP1	Klebsiella variicola
GCA_040566245.1	JBBGAA000000000	SAMN40518073	MM1	Morganella morganii
GCA_040559525.1	JBBFNZ000000000	SAMN40477399	PM1	Proteus mirabilis
GCA_040566055.1	JBBGAG000000000	SAMN40518079	PM2	Proteus mirabilis
GCA_040565875.1	JBBHET000000000	SAMN40518093	RO1	Raoultella ornithinolytica
GCA_040561385.1	JBBFQO000000000	SAMN40477332	RP1	Raoultella planticola
GCA_040567015.1	JBEEBG000000000	SAMN08720241	NR0832	Serratia marcescens
GCA_040567055.1	JBEEBI000000000	SAMN08720240	NR0578	Serratia marcescens
GCA_040567085.1	JBEEBK000000000	SAMN08720242	NR0268	Serratia marcescens
GCA_040567115.1	JBEEBJ000000000	SAMN08720244	NR0342	Serratia marcescens
GCA_040564625.1	JBBFWX000000000	SAMN40477166	SM1	Serratia marcescens
GCA_040565835.1	JBBGAR000000000	SAMN40518090	SM16	Serratia marcescens
GCA_040565935.1	JBBGAP000000000	SAMN40518088	SM15	Serratia marcescens
GCA_040562615.1	JBBFTA000000000	SAMN40477268	SM7	Serratia marcescens
GCA_040563405.1	JBBFUN000000000	SAMN40477229	SM6	Serratia marcescens
GCA_040561665.1	JBBFRF000000000	SAMN40477315	SM11	Serratia marcescens
GCA_040562105.1	JBBFSE000000000	SAMN40477290	SM10	Serratia marcescens
GCA_040562205.1	JBBFSG000000000	SAMN40477288	SM8	Serratia marcescens
GCA_040562185.1	JBBFSF000000000	SAMN40477289	SM9	Serratia marcescens
GCA_040559945.1	JBBFOS000000000	SAMN40477380	SM14	Serratia marcescens
GCA_040560975.1	JBBFPP000000000	SAMN40477357	SM12	Serratia marcescens
GCA_040560755.1	JBBFPI000000000	SAMN40477364	SM13	Serratia marcescens

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Carbapenem-resistant Enterobacterales from a New York City Hospital

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