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Accession: PRJNA472090 ID: 472090

Single cell RNA-seq of the human long-term self-renewing neuroepithelial-like stem cell line SAI2 (human)

See Genome Information for Homo sapiens
The transcriptome of single long-term self-renewing neuroepithelial-like stem cells (LT-NES) was studied in order to establish a baseline for investigations into modules of synergistically active transcription factors that determine developmental cell subpopulations Overall design: RNA-seq of 288 single cells
AccessionPRJNA472090; GEO: GSE114670
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsOkawa S et al., "Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift.", Nat Commun, 2018 Jul 3;9(1):2595
SubmissionRegistration date: 18-May-2018
Molecular Neurobiology, Medical Biochemistry and Biophysics, Karolinska Institutet
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments288
Publications
PubMed1
PMC1
Other datasets
BioSample288
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes2
SRA Data Details
ParameterValue
Data volume, Gbases8
Data volume, Mbytes7875

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