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Accession: PRJNA270657 ID: 270657

sediment metagenome

Estuary Sediments Metagenome

Genomic reconstruction of bacterial and archaean genomes from different redox regimes of estuary sediments
AccessionPRJNA270657
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsediment metagenome[Taxonomy ID: 749907]
unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Publications (total 6)
More...
Grants
  • "Insights into metabolisms of the cosmopolitan, enigmatic Miscellaneous Crenarchaeaotal Group (MCG) in marine sediments" (Grant ID DE-AC02-05CH11231, Department of Energy)
SubmissionRegistration date: 21-Aug-2015
University of Texas
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20711
WGS master103
Protein Sequences221985
Publications
PubMed6
PMC3
Other datasets
BioSample109
Assembly103
Assembly details:
Assembly levelNumber of Assemblies
59
44
103
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001304445.1ContigLJTU00000000SAMN03994182
SG8_45
GCA_001304215.1ScaffoldLJVB00000000SAMN03994187
SM1_46
GCA_001303835.1ScaffoldLJUK00000000SAMN03994204
SM23_46
GCA_001303105.1ScaffoldLJNN00000000SAMN03994164
SG8_19
GCA_001303965.1ScaffoldLJUS00000000SAMN03994211
SM23_ 63
GCA_001304175.1ScaffoldLJUZ00000000SAMN03994217
SM23_84
GCA_001304045.1ScaffoldLJVC00000000SAMN03994188
SM1_62
GCA_001303955.1ContigLJUP00000000SAMN03994209
SM23_62
GCA_001304505.1ContigLJUQ00000000SAMN03994210
SM23_62_1
GCA_001303445.1ScaffoldLJTQ00000000SAMN03994178
SG8_39
GCA_001304425.1ScaffoldLJTS00000000SAMN03994180
SG8_40
GCA_001303585.1ContigLJTT00000000SAMN03994181
SG8_41
GCA_001723835.1ScaffoldMCBD00000000SAMN04979201
WOR_SM1_79
GCA_001723855.1ContigMCBC00000000SAMN04980912
WOR_SM1_86-2
GCA_001595885.1ScaffoldLSSH00000000SAMN04495912
SG8-5
GCA_001563465.1ContigLRSM00000000SAMN03998760
SMTZ-45
GCA_001563335.1ContigLRSL00000000SAMN03998759
SMTZ1-45
GCA_001563325.1ContigLRSK00000000SAMN03998758
SMTZ1-83
GCA_001303765.1ContigLJUH00000000SAMN03994201
SM23_39
GCA_001302865.1ContigLIZW00000000SAMN03994147
DG_40
GCA_001304345.1ScaffoldLIZO00000000SAMN03994139
DG_18
GCA_001302685.1ScaffoldLIZQ00000000SAMN03994141
DG_22
GCA_001303565.1ScaffoldLJTX00000000SAMN03994185
SG8_51_3
GCA_001303625.1ScaffoldLJTZ00000000SAMN03994193
SM23_28_1
GCA_001303545.1ScaffoldLJUA00000000SAMN03994194
SM23_28_2
GCA_001302765.1ContigLIZV00000000SAMN03994146
DG_8
GCA_001303025.1ScaffoldLJNK00000000SAMN03994161
SG8_13
GCA_001304105.1ScaffoldLJUR00000000SAMN03994218
SM23_61
GCA_001303345.1ContigLJTJ00000000SAMN03994171
SG8_35
GCA_001303325.1ContigLJTL00000000SAMN03994173
SG8_35_2
GCA_001595785.1ContigLSSJ00000000SAMN04495915
SM23-78
GCA_001303045.1ScaffoldLJNJ00000000SAMN03994160
SG8_11
GCA_001303065.1ScaffoldLJNL00000000SAMN03994162
SG8_15
GCA_001303245.1ContigLJNS00000000SAMN03994169
SG8_30
GCA_001303285.1ContigLJTI00000000SAMN03994170
SG8_31
GCA_001303495.1ContigLJTV00000000SAMN03994183
SG8_47
GCA_001303265.1ScaffoldLJNM00000000SAMN03994163
SG8_17
GCA_001303085.1ScaffoldLJNO00000000SAMN03994165
SG8_23
GCA_001303165.1ScaffoldLJNQ00000000SAMN03994167
SG8_28
GCA_001304415.1ScaffoldLJTP00000000SAMN03994177
SG8_38_2
GCA_001303825.1ScaffoldLJUM00000000SAMN03994206
SM23_52
GCA_001515185.1ScaffoldLQHI00000000SAMN04385803
DG-33
GCA_001515195.1ScaffoldLQHJ00000000SAMN04385804
DG-33-1
GCA_001302905.1ScaffoldLJNC00000000SAMN03994153
DG_63
GCA_001303005.1ContigLJNH00000000SAMN03994158
DG_75
GCA_001303415.1ScaffoldLJTN00000000SAMN03994175
SG8_38
GCA_001303365.1ScaffoldLJTO00000000SAMN03994176
SG8_38_1
GCA_001303205.1ScaffoldLJNR00000000SAMN03994168
SG8_3
GCA_001303305.1ContigLJTK00000000SAMN03994172
SG8_35_1
GCA_001303405.1ContigLJTM00000000SAMN03994174
SG8_35_4
GCA_001303745.1ContigLJUG00000000SAMN03994200
SM23_35
GCA_001303645.1ContigLJUB00000000SAMN03994195
SM23_29
GCA_001304135.1ContigLJUU00000000SAMN03994219
SM23_72
GCA_001303135.1ScaffoldLJND00000000SAMN03994154
DG_72
GCA_001303125.1ContigLJNE00000000SAMN03994155
DG_74_1
GCA_001302965.1ContigLJNF00000000SAMN03994156
DG_74_2
GCA_001302985.1ContigLJNG00000000SAMN03994157
DG_74_3
GCA_001303185.1ScaffoldLJNP00000000SAMN03994166
SG8_24
GCA_001303465.1ScaffoldLJTR00000000SAMN03994179
SG8_4
GCA_001304275.1ScaffoldLJVF00000000SAMN03994191
SM1_79
GCA_001303695.1ScaffoldLJUC00000000SAMN03994196
SM23_30
GCA_001303665.1ScaffoldLJUF00000000SAMN03994199
SM23_33
GCA_001302675.1ScaffoldLIZP00000000SAMN03994140
DG_20
GCA_001302825.1ScaffoldLIZR00000000SAMN03994142
DG_23
GCA_001304355.1ScaffoldLJMZ00000000SAMN03994150
DG_58
GCA_001303605.1ScaffoldLJTY00000000SAMN03994192
SM23_25
GCA_001303885.1ScaffoldLJUE00000000SAMN03994198
SM23_32
GCA_001304295.1ScaffoldLJUT00000000SAMN03994212
SM23_65
GCA_001302885.1ScaffoldLJNB00000000SAMN03994152
DG_61
GCA_001304365.1ContigLJNA00000000SAMN03994151
DG_60
GCA_001595795.1ContigLSSB00000000SAMN04495907
DG-70
GCA_001595815.1ContigLSSC00000000SAMN04495908
DG-70-1
GCA_001595805.1ContigLSSD00000000SAMN04495909
SG8-52-1
GCA_001595865.1ContigLSSE00000000SAMN04495910
SG8-52-2
GCA_001595915.1ContigLSSG00000000SAMN04495911
SG8-52-3
GCA_001595875.1ContigLSSF00000000SAMN04495913
SG8-52-4
GCA_001595945.1ContigLSSI00000000SAMN04495914
SM1-50
GCA_001304455.1ScaffoldLJTW00000000SAMN03994184
SG8_50
GCA_001304035.1ScaffoldLJUD00000000SAMN03994197
SM23_31
GCA_001304495.1ScaffoldLJUN00000000SAMN03994207
SM23_57
GCA_001304075.1ScaffoldLJUL00000000SAMN03994205
SM23_51
GCA_001302805.1ScaffoldLIZY00000000SAMN03994149
DG_56
GCA_001302835.1ScaffoldLIZS00000000SAMN03994143
DG_24
GCA_001304335.1ScaffoldLIZT00000000SAMN03994144
DG_26
GCA_001303225.1ScaffoldLJNI00000000SAMN03994159
DG_78
GCA_001304185.1ScaffoldLJVA00000000SAMN03994186
SM1_40
GCA_001303705.1ScaffoldLJUI00000000SAMN03994202
SM23_40
GCA_001302785.1ScaffoldLIZX00000000SAMN03994148
DG_54_3
GCA_001304255.1ContigLJVE00000000SAMN03994190
SM1_77
GCA_001303785.1ContigLJUJ00000000SAMN03994203
SM23_42
GCA_001303805.1ContigLJUO00000000SAMN03994208
SM23_60
GCA_001302725.1ContigLIZU00000000SAMN03994145
DG_27
GCA_001304225.1ScaffoldLJVD00000000SAMN03994189
SM1_73
GCA_001303995.1ScaffoldLJUV00000000SAMN03994213
SM23_73
GCA_001304315.1ScaffoldLJUW00000000SAMN03994214
SM23_73_2
GCA_001304155.1ContigLJUX00000000SAMN03994215
SM23_73_3
GCA_001304015.1ContigLJUY00000000SAMN03994216
SM23_81
GCA_001273495.1ContigLFWY00000000SAMN03793029
SMTZ-80
GCA_001273375.1ScaffoldLFWX00000000SAMN03793028
SMTZ1-55
GCA_001273345.1ContigLFWU00000000SAMN03793025
SG8-32-1
GCA_001273335.1ContigLFWV00000000SAMN03793026
SG8-32-3
GCA_001273415.1ScaffoldLFWZ00000000SAMN03793030
DG-45
GCA_001273385.1ContigLFWW00000000SAMN03793027
AD8-1

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