Escherichia coli (ID 285020) - BioProject

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Accession: PRJNA285020 ID: 285020

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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Escherichia coli of public health importance

Accession	PRJNA285020
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Ferdous M et al., "Molecular characterization and phylogeny of Shiga toxin-producing Escherichia coli isolates obtained from two Dutch regions using whole genome sequencing.", Clin Microbiol Infect, 2016 Jul;22(7):642.e1-9 Ferdous M et al., "Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing.", J Clin Microbiol, 2015 Nov;53(11):3530-8
Submission	Registration date: 15-Sep-2015 University of Groningen, University Medical Center Groningen
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	28873
WGS master	160
Protein Sequences	825238
Publications
PubMed	2
PMC	1
Other datasets
BioSample	160
Assembly	160

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

120
40
160

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001297965.1	LFUH00000000	SAMN03780448	STEC 915	Escherichia coli
GCA_001297985.1	LFUB00000000	SAMN03779023	STEC 623	Escherichia coli
GCA_001297975.1	LDOZ00000000	SAMN03736827	STEC 343	Escherichia coli
GCA_001297995.1	LFUA00000000	SAMN03779010	STEC 605	Escherichia coli
GCA_001281915.1	LGBI00000000	SAMN03785602	STEC 2821	Escherichia coli
GCA_001281905.1	LGBG00000000	SAMN03785599	STEC 2410	Escherichia coli
GCA_001281965.1	LGBK00000000	SAMN03785608	E09/10	Escherichia coli
GCA_001281925.1	LGBH00000000	SAMN03785600	STEC 2667	Escherichia coli
GCA_001281995.1	LGBM00000000	SAMN03785605	EPEC 393	Escherichia coli
GCA_001281985.1	LGBL00000000	SAMN03785604	EPEC 287	Escherichia coli
GCA_001282025.1	LGBN00000000	SAMN03785606	EPEC 1572	Escherichia coli
GCA_001282035.1	LGBO00000000	SAMN03785607	EPEC 1669	Escherichia coli
GCA_001282065.1	LGBQ00000000	SAMN03785601	STEC 2820	Escherichia coli
GCA_001281775.1	LGBA00000000	SAMN03785593	STEC 989	Escherichia coli
GCA_001281755.1	LGBP00000000	SAMN03785609	E09/224	Escherichia coli
GCA_001281815.1	LGBC00000000	SAMN03785595	STEC 1109	Escherichia coli
GCA_001281795.1	LGBB00000000	SAMN03785594	STEC 994	Escherichia coli
GCA_001281855.1	LGBE00000000	SAMN03785597	STEC 2112	Escherichia coli
GCA_001281885.1	LGBF00000000	SAMN03785598	STEC 2257	Escherichia coli
GCA_001281845.1	LGBD00000000	SAMN03785596	STEC 2075	Escherichia coli
GCA_001281685.1	LGAZ00000000	SAMN03779025	STEC 771	Escherichia coli
GCA_001281725.1	LGBJ00000000	SAMN03785603	STEC 2868	Escherichia coli
GCA_001606675.1	LOGV00000000	SAMN04002666	STEC 2174	Escherichia coli
GCA_001606635.1	LOGO00000000	SAMN04002655	STEC 1513	Escherichia coli
GCA_001606785.1	LOGG00000000	SAMN04002646	STEC 1299	Escherichia coli
GCA_001606775.1	LOCT00000000	SAMN04002609	STEC 329	Escherichia coli
GCA_001606755.1	LOCS00000000	SAMN04002608	STEC 309	Escherichia coli
GCA_001606725.1	LOCW00000000	SAMN04002612	STEC 384	Escherichia coli
GCA_001606865.1	LOFV00000000	SAMN04002635	STEC 1161	Escherichia coli
GCA_001606855.1	LOFW00000000	SAMN04002636	STEC 1178	Escherichia coli
GCA_001606835.1	LOGH00000000	SAMN04002647	STEC 1303	Escherichia coli
GCA_001606815.1	LOGF00000000	SAMN04002645	STEC 1293	Escherichia coli
GCA_001606955.1	LOJD00000000	SAMN04002662	STEC 2074	Escherichia coli
GCA_001606935.1	LPWW00000000	SAMN04002663	STEC 2110.1	Escherichia coli
GCA_001606915.1	LOIE00000000	SAMN04002678	STEC 2499	Escherichia coli
GCA_001606895.1	LOFR00000000	SAMN04002631	STEC 886	Escherichia coli
GCA_001606705.1	LOFQ00000000	SAMN04002630	STEC 793	Escherichia coli
GCA_001606695.1	LOFL00000000	SAMN04002625	STEC 707	Escherichia coli
GCA_001606615.1	LOGN00000000	SAMN04002653	STEC 1500	Escherichia coli
GCA_001606625.1	LPWV00000000	SAMN04002654	STEC 1506	Escherichia coli
GCA_001606595.1	LOGC00000000	SAMN04002642	STEC 1255	Escherichia coli
GCA_001606545.1	LOGE00000000	SAMN04002644	STEC 1284	Escherichia coli
GCA_001606555.1	LOGD00000000	SAMN04002643	STEC 1270	Escherichia coli
GCA_001606525.1	LOGT00000000	SAMN04002660	STEC 1686	Escherichia coli
GCA_001606515.1	LOGL00000000	SAMN04002651	STEC 1465	Escherichia coli
GCA_001606475.1	LOGM00000000	SAMN04002652	STEC 1473	Escherichia coli
GCA_001606445.1	LOGK00000000	SAMN04002650	STEC 1442	Escherichia coli
GCA_001606465.1	LOGJ00000000	SAMN04002649	STEC 1375	Escherichia coli
GCA_001606435.1	LOJC00000000	SAMN04002661	STEC 2064	Escherichia coli
GCA_001606375.1	LOFK00000000	SAMN04002624	STEC 691	Escherichia coli
GCA_001606365.1	LOFM00000000	SAMN04002626	STEC 709	Escherichia coli
GCA_001606385.1	LOGW00000000	SAMN04002667	STEC 2193	Escherichia coli
GCA_001606355.1	LOFN00000000	SAMN04002627	STEC 731	Escherichia coli
GCA_001607955.1	LOIY00000000	SAMN04002705	STEC 2980	Escherichia coli
GCA_001607925.1	LOIX00000000	SAMN04002704	STEC 2962	Escherichia coli
GCA_001607455.1	LPXA00000000	SAMN04002677	STEC 2450	Escherichia coli
GCA_001607435.1	LNZL00000000	SAMN04002606	STEC 200	Escherichia coli
GCA_001607995.1	LOCR00000000	SAMN04002607	STEC 299	Escherichia coli
GCA_001608005.1	LOFJ00000000	SAMN04002623	STEC 690	Escherichia coli
GCA_001607975.1	LOGX00000000	SAMN04002668	STEC 2211	Escherichia coli
GCA_001607445.1	LOCX00000000	SAMN04002613	STEC 464	Escherichia coli
GCA_001607415.1	LNZK00000000	SAMN04002605	STEC 196	Escherichia coli
GCA_001607385.1	LNZJ00000000	SAMN04002604	STEC 169	Escherichia coli
GCA_001607365.1	LOJB00000000	SAMN04002695	STEC 2839	Escherichia coli
GCA_001607355.1	LOIO00000000	SAMN04002692	STEC 2788	Escherichia coli
GCA_001607335.1	LOIP00000000	SAMN04002693	STEC 2797	Escherichia coli
GCA_001607295.1	LOHB00000000	SAMN04002673	STEC 2359	Escherichia coli
GCA_001607285.1	LPWY00000000	SAMN04002674	STEC 2363	Escherichia coli
GCA_001607265.1	LOHC00000000	SAMN04002676	STEC 2441	Escherichia coli
GCA_001607255.1	LOHA00000000	SAMN04002672	STEC 2346	Escherichia coli
GCA_001607225.1	LOGZ00000000	SAMN04002671	STEC 2334	Escherichia coli
GCA_001607205.1	LOGB00000000	SAMN04002641	STEC 1236	Escherichia coli
GCA_001607185.1	LOGA00000000	SAMN04002640	STEC 1225	Escherichia coli
GCA_001607175.1	LOFZ00000000	SAMN04002639	STEC 1201	Escherichia coli
GCA_001607155.1	LOGI00000000	SAMN04002648	STEC 1363	Escherichia coli
GCA_001607125.1	LOGY00000000	SAMN04002669	STEC 2236	Escherichia coli
GCA_001607105.1	LPWX00000000	SAMN04002670	STEC 2270	Escherichia coli
GCA_001607095.1	LOFU00000000	SAMN04002634	STEC 1117	Escherichia coli
GCA_001607075.1	LOFS00000000	SAMN04002632	STEC 931	Escherichia coli
GCA_001607045.1	LOFT00000000	SAMN04002633	STEC 940	Escherichia coli
GCA_001607015.1	LOCY00000000	SAMN04002614	STEC 477	Escherichia coli
GCA_001607025.1	LOCZ00000000	SAMN04002615	STEC 479	Escherichia coli
GCA_001606975.1	LOJE00000000	SAMN04002664	STEC 2110.3	Escherichia coli
GCA_001606985.1	LOGU00000000	SAMN04002665	STEC 2144	Escherichia coli
GCA_001608055.1	LOCU00000000	SAMN04002610	STEC 370	Escherichia coli
GCA_001608015.1	LOCV00000000	SAMN04002611	STEC 380	Escherichia coli
GCA_001608075.1	LOFP00000000	SAMN04002629	STEC 764	Escherichia coli
GCA_001608085.1	LOFO00000000	SAMN04002628	STEC 757	Escherichia coli
GCA_001608105.1	LOGQ00000000	SAMN04002657	STEC 1532	Escherichia coli
GCA_001608125.1	LOGP00000000	SAMN04002656	STEC 1528	Escherichia coli
GCA_001608165.1	LOGR00000000	SAMN04002658	STEC 1585	Escherichia coli
GCA_001608155.1	LOGS00000000	SAMN04002659	STEC 1634	Escherichia coli
GCA_001608205.1	LPWZ00000000	SAMN04002675	STEC 2419	Escherichia coli
GCA_001608185.1	LOFX00000000	SAMN04002637	STEC 1188	Escherichia coli
GCA_001608245.1	LOIZ00000000	SAMN04002706	STEC 3031	Escherichia coli
GCA_001608235.1	LOFY00000000	SAMN04002638	STEC 1198	Escherichia coli
GCA_001608285.1	LNFV00000000	SAMN04002603	STEC 168	Escherichia coli
GCA_001608265.1	LNFT00000000	SAMN04002602	STEC 66	Escherichia coli
GCA_001608315.1	LNFU00000000	SAMN04002601	STEC 29	Escherichia coli
GCA_001607915.1	LPXE00000000	SAMN04002703	STEC 2954	Escherichia coli
GCA_001607895.1	LOIW00000000	SAMN04002702	STEC 2953	Escherichia coli
GCA_001607875.1	LOIU00000000	SAMN04002700	STEC 2920	Escherichia coli
GCA_001607845.1	LOIV00000000	SAMN04002701	STEC 2938	Escherichia coli
GCA_001607835.1	LOIT00000000	SAMN04002699	STEC 2894.2	Escherichia coli
GCA_001607815.1	LOIS00000000	SAMN04002698	STEC 2894.1	Escherichia coli
GCA_001607795.1	LOIR00000000	SAMN04002697	STEC 2861	Escherichia coli
GCA_001607755.1	LOJA00000000	SAMN04002694	STEC 2826	Escherichia coli
GCA_001607765.1	LOIQ00000000	SAMN04002696	STEC 2841	Escherichia coli
GCA_001607735.1	LPXF00000000	SAMN04002691	STEC 2770	Escherichia coli
GCA_001607715.1	LOIN00000000	SAMN04002690	STEC 2764	Escherichia coli
GCA_001607685.1	LOIL00000000	SAMN04002687	STEC 2708	Escherichia coli
GCA_001607675.1	LOIM00000000	SAMN04002688	STEC 2743	Escherichia coli
GCA_001607655.1	LPXD00000000	SAMN04002689	STEC 2746	Escherichia coli
GCA_001607635.1	LPXC00000000	SAMN04002685	STEC 2620	Escherichia coli
GCA_001607605.1	LOIK00000000	SAMN04002686	STEC 2633	Escherichia coli
GCA_001607595.1	LOIJ00000000	SAMN04002684	STEC 2595	Escherichia coli
GCA_001607575.1	LOII00000000	SAMN04002683	STEC 2591	Escherichia coli
GCA_001607555.1	LOIH00000000	SAMN04002682	STEC 2573	Escherichia coli
GCA_001607525.1	LOIF00000000	SAMN04002680	STEC 2539	Escherichia coli
GCA_001607515.1	LOIG00000000	SAMN04002681	STEC 2564	Escherichia coli
GCA_001607495.1	LPXB00000000	SAMN04002679	STEC 2505	Escherichia coli
GCA_001609315.1	LPUN00000000	SAMN04002713	STEC 3106	Escherichia coli
GCA_001609295.1	LPUM00000000	SAMN04002712	STEC 3098	Escherichia coli
GCA_001609265.1	LPUK00000000	SAMN04002710	STEC 3087	Escherichia coli
GCA_001609335.1	LPUL00000000	SAMN04002711	STEC 3094	Escherichia coli
GCA_001609255.1	LPUJ00000000	SAMN04002709	STEC 3084	Escherichia coli
GCA_001609235.1	LPUH00000000	SAMN04002707	STEC 3039	Escherichia coli
GCA_001609215.1	LPUI00000000	SAMN04002708	STEC 3055	Escherichia coli
GCA_001609745.1	LODB00000000	SAMN04002617	STEC 545	Escherichia coli
GCA_001609735.1	LODC00000000	SAMN04002618	STEC 559	Escherichia coli
GCA_001609795.1	LODE00000000	SAMN04002620	STEC 565	Escherichia coli
GCA_001609765.1	LODA00000000	SAMN04002616	STEC 487	Escherichia coli
GCA_001609835.1	LODG00000000	SAMN04002622	STEC 645	Escherichia coli
GCA_001609815.1	LODF00000000	SAMN04002621	STEC 627	Escherichia coli
GCA_001609855.1	LODD00000000	SAMN04002619	STEC 563	Escherichia coli
GCA_001742725.1	LZEH00000000	SAMN05200898	EPEC 2827	Escherichia coli
GCA_001742705.1	LZEG00000000	SAMN05200897	EPEC 2081	Escherichia coli
GCA_001742665.1	LZEF00000000	SAMN05200896	EPEC 2272	Escherichia coli
GCA_001742655.1	LZEE00000000	SAMN05200895	EPEC 2252	Escherichia coli
GCA_001742645.1	LZED00000000	SAMN05200894	EPEC 1554	Escherichia coli
GCA_001742625.1	LZEC00000000	SAMN05200893	EPEC 1150	Escherichia coli
GCA_001742565.1	LZEA00000000	SAMN05200891	EPEC 2669	Escherichia coli
GCA_001742575.1	LZEB00000000	SAMN05200892	EPEC 3029	Escherichia coli
GCA_001742555.1	LZDZ00000000	SAMN05200890	EPEC 2646	Escherichia coli
GCA_001742545.1	LZDY00000000	SAMN05200889	EPEC 1316	Escherichia coli
GCA_001742495.1	LZDU00000000	SAMN05200885	EPEC 400	Escherichia coli
GCA_001742465.1	LZDV00000000	SAMN05200886	EPEC 536	Escherichia coli
GCA_001742485.1	LZDW00000000	SAMN05200887	EPEC 631	Escherichia coli
GCA_001742475.1	LZDX00000000	SAMN05200888	EPEC 720	Escherichia coli
GCA_002286605.1	MRWB00000000	SAMN06131778	STEC 587-5	Escherichia coli
GCA_002286535.1	MRVY00000000	SAMN06131775	STEC 440	Escherichia coli
GCA_002286565.1	MRVZ00000000	SAMN06131776	STEC 514-2	Escherichia coli
GCA_002286515.1	MRVV00000000	SAMN06131772	STEC 510-5	Escherichia coli
GCA_002286525.1	MRVW00000000	SAMN06131773	STEC 625C-4	Escherichia coli
GCA_002286545.1	MRVX00000000	SAMN06131774	STEC 621S1	Escherichia coli
GCA_002286585.1	MRWA00000000	SAMN06131777	STEC 573-4	Escherichia coli
GCA_002286465.1	MRVR00000000	SAMN06131768	STEC 479BS2	Escherichia coli
GCA_002286445.1	MRVS00000000	SAMN06131769	STEC 536-9	Escherichia coli
GCA_002286455.1	MRVU00000000	SAMN06131771	STEC 476-14	Escherichia coli
GCA_002286435.1	MRVT00000000	SAMN06131770	STEC 480-3	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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