Escherichia coli (ID 298331) - BioProject

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Accession: PRJNA298331 ID: 298331

Escherichia coli

GenomeTrakr Project: Florida Department of Health, University of Florida

See Genome Information for Escherichia coli

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9222 additional projects are related by organism.

Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events. Comparative genomics using Illumina sequencing

Accession	PRJNA298331
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Ginn A et al., "Draft Genome Sequence of an Escherichia coli O8:H19 Sequence Type 708 Strain Isolated from a Holstein Dairy Cow with Metritis.", Genome Announc, 2016 Apr 7;4(2) Mir RA et al., "Identification and Characterization of Cefotaxime Resistant Bacteria in Beef Cattle.", PLoS One, 2016;11(9):e0163279
Submission	Registration date: 9-Feb-2016 US Food and Drug Administration
Related Resources	University of Florida Emerging Pathogens Institute Emerging Pathogens Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	33510
WGS master	207
SRA Experiments	254
Protein Sequences	794866
Publications
PubMed	2
PMC	2
Other datasets
BioSample	295
Assembly	207

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

207
207

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001554295.1	LSFT00000000	SAMN04396104	KCJ852	Escherichia coli
GCA_001728785.1	LYVB00000000	SAMN04191551	FRIK2069	Escherichia coli
GCA_001730745.1	LYVC00000000	SAMN04942844	KCJ101	Escherichia coli
GCA_003121465.1	QDJW00000000	SAMN04160769	JEONG-9593	Escherichia coli
GCA_003121565.1	QDKF00000000	SAMN04191548	JEONG-9597	Escherichia coli
GCA_003121525.1	QDJY00000000	SAMN04160772	JEONG-9596	Escherichia coli
GCA_003121535.1	QDJX00000000	SAMN04160770	JEONG-9594	Escherichia coli
GCA_003076195.1	QDKD00000000	SAMN04160746	JEONG-9603	Escherichia coli
GCA_003076255.1	QDKE00000000	SAMN04160747	JEONG-9615	Escherichia coli
GCA_003076235.1	QDKC00000000	SAMN04160745	JEONG-9602	Escherichia coli
GCA_003076215.1	QDKB00000000	SAMN04160744	JEONG-9601	Escherichia coli
GCA_003076155.1	QDJZ00000000	SAMN04160742	JEONG-9599	Escherichia coli
GCA_003076175.1	QDKA00000000	SAMN04160743	JEONG-9600	Escherichia coli
GCA_003173475.1	QGNG00000000	SAMN04510557	KCJ9511	Escherichia coli
GCA_003173395.1	QGNF00000000	SAMN04510558	KCJ9493	Escherichia coli
GCA_003173455.1	QGNE00000000	SAMN04510562	KCJ9492	Escherichia coli
GCA_003173415.1	QGNB00000000	SAMN04510560	KCJ9488	Escherichia coli
GCA_003173405.1	QGNC00000000	SAMN04510561	KCJ9489	Escherichia coli
GCA_003173375.1	QGND00000000	SAMN04510568	KCJ9491	Escherichia coli
GCA_003173535.1	QGNS00000000	SAMN04510559	KCJ9499	Escherichia coli
GCA_002849135.1	PKKU00000000	SAMN04160767	JEONG-9567	Escherichia coli
GCA_002849165.1	PKKX00000000	SAMN04160773	JEONG-9598	Escherichia coli
GCA_002849125.1	PKKT00000000	SAMN04510564	KCJB41	Escherichia coli
GCA_002849185.1	PKKV00000000	SAMN04160766	JEONG-9566	Escherichia coli
GCA_002849195.1	PKKW00000000	SAMN04160768	JEONG-9592	Escherichia coli
GCA_002289475.1	NTDL00000000	SAMN05163867	KCJK511	Escherichia coli
GCA_002289465.1	NTDK00000000	SAMN04942842	KCJK507	Escherichia coli
GCA_002291115.1	NSEP00000000	SAMN04160758	JEONG-5650	Escherichia coli
GCA_002291105.1	NSEK00000000	SAMN04160752	JEONG-5446	Escherichia coli
GCA_002291085.1	NSEJ00000000	SAMN04160751	JEONG-5413	Escherichia coli
GCA_002291055.1	NSEE00000000	SAMN04158430	JEONG-5114	Escherichia coli
GCA_002291035.1	NSED00000000	SAMN04158429	JEONG-5084	Escherichia coli
GCA_002291025.1	NSER00000000	SAMN04160760	JEONG-5776	Escherichia coli
GCA_002290995.1	NSEQ00000000	SAMN04160759	JEONG-5766	Escherichia coli
GCA_002290985.1	NSEO00000000	SAMN04160756	JEONG-5617	Escherichia coli
GCA_002290955.1	NSEN00000000	SAMN04160755	JEONG-5511	Escherichia coli
GCA_002290945.1	NSEM00000000	SAMN04160754	JEONG-5507	Escherichia coli
GCA_002290925.1	NSEL00000000	SAMN04160753	JEONG-5453	Escherichia coli
GCA_002290905.1	NSEI00000000	SAMN04158434	JEONG-5298	Escherichia coli
GCA_002290875.1	NSEH00000000	SAMN04158433	JEONG-5250	Escherichia coli
GCA_002290865.1	NSEG00000000	SAMN04158432	JEONG-5232	Escherichia coli
GCA_002290835.1	NSEF00000000	SAMN04158431	JEONG-5120	Escherichia coli
GCA_002327035.1	NTFD00000000	SAMN05410121	KCJK5161	Escherichia coli
GCA_002327045.1	NTFE00000000	SAMN05410092	KCJK5162	Escherichia coli
GCA_002327025.1	NTFC00000000	SAMN05410099	KCJK5158	Escherichia coli
GCA_002326995.1	NTEV00000000	SAMN05410056	KCJK5108	Escherichia coli
GCA_002326945.1	NTEZ00000000	SAMN05410142	KCJK5144	Escherichia coli
GCA_002326965.1	NTEY00000000	SAMN05409604	KCJK5143	Escherichia coli
GCA_002326955.1	NTES00000000	SAMN05410075	KCJK4935	Escherichia coli
GCA_002326895.1	NTFB00000000	SAMN05410130	KCJK5148	Escherichia coli
GCA_002326915.1	NTFF00000000	SAMN05410110	KCJK5395	Escherichia coli
GCA_002326865.1	NTEQ00000000	SAMN05363785	KCJK4744	Escherichia coli
GCA_002326875.1	NTET00000000	SAMN05410045	KCJK4937	Escherichia coli
GCA_002326835.1	NTFA00000000	SAMN05409583	KCJK5146	Escherichia coli
GCA_002326825.1	NTEX00000000	SAMN05409600	KCJK5142	Escherichia coli
GCA_002326795.1	NTEW00000000	SAMN05409592	KCJK5139	Escherichia coli
GCA_002326765.1	NTEU00000000	SAMN05410085	KCJK5106	Escherichia coli
GCA_002326755.1	NTER00000000	SAMN05408391	KCJK4934	Escherichia coli
GCA_002324845.1	NTEO00000000	SAMN05363783	KCJK4727	Escherichia coli
GCA_002324835.1	NTEP00000000	SAMN05363784	KCJK4729	Escherichia coli
GCA_002324805.1	NTEM00000000	SAMN05363781	KCJK4405	Escherichia coli
GCA_002324775.1	NTEL00000000	SAMN05408390	KCJK4201	Escherichia coli
GCA_002324765.1	NTEI00000000	SAMN05363778	KCJK4166	Escherichia coli
GCA_002324755.1	NTEH00000000	SAMN05363777	KCJK4162	Escherichia coli
GCA_002324725.1	NTEN00000000	SAMN05363782	KCJK4726	Escherichia coli
GCA_002324695.1	NTEK00000000	SAMN05363780	KCJK4181	Escherichia coli
GCA_002324685.1	NTEJ00000000	SAMN05363779	KCJK4176	Escherichia coli
GCA_002324675.1	NTEG00000000	SAMN05363776	KCJK4158	Escherichia coli
GCA_002324645.1	NTEE00000000	SAMN05363774	KCJK4144	Escherichia coli
GCA_002324625.1	NTED00000000	SAMN05363773	KCJK4140	Escherichia coli
GCA_002324605.1	NTEC00000000	SAMN05363772	KCJK4139	Escherichia coli
GCA_002324595.1	NTEB00000000	SAMN05363771	KCJK4137	Escherichia coli
GCA_002324535.1	NTDZ00000000	SAMN05232930	KCJK3945	Escherichia coli
GCA_002324575.1	NTEA00000000	SAMN05363770	KCJK4127	Escherichia coli
GCA_002324505.1	NTDY00000000	SAMN05232921	KCJK3920	Escherichia coli
GCA_002324525.1	NTDX00000000	SAMN05232920	KCJK3915	Escherichia coli
GCA_002324495.1	NTEF00000000	SAMN05363775	KCJK4148	Escherichia coli
GCA_002324465.1	NTDP00000000	SAMN05163873	KCJK2721	Escherichia coli
GCA_002324435.1	NTDM00000000	SAMN05163868	KCJK512	Escherichia coli
GCA_002324415.1	NTDD00000000	SAMN04942847	KCJK467	Escherichia coli
GCA_002324425.1	NTDG00000000	SAMN05163865	KCJK502	Escherichia coli
GCA_002324365.1	NTDV00000000	SAMN05232923	KCJK3909	Escherichia coli
GCA_002324345.1	NTDS00000000	SAMN05232928	KCJK3886	Escherichia coli
GCA_002324355.1	NTDT00000000	SAMN05232927	KCJK3889	Escherichia coli
GCA_002324335.1	NTDR00000000	SAMN05232919	KCJK3864	Escherichia coli
GCA_002324235.1	NTDU00000000	SAMN05232922	KCJK3893	Escherichia coli
GCA_002324305.1	NTDN00000000	SAMN05163869	KCJK513	Escherichia coli
GCA_002324295.1	NTDH00000000	SAMN04942841	KCJK506	Escherichia coli
GCA_002324245.1	NTDW00000000	SAMN05232925	KCJK3910	Escherichia coli
GCA_002324215.1	NTDQ00000000	SAMN05163875	KCJK2722	Escherichia coli
GCA_002324225.1	NTDO00000000	SAMN05163870	KCJK514	Escherichia coli
GCA_002324175.1	NTDF00000000	SAMN04942840	KCJK501	Escherichia coli
GCA_002324155.1	NTDE00000000	SAMN04942839	KCJK500	Escherichia coli
GCA_002324145.1	NTDC00000000	SAMN04942838	KCJK330	Escherichia coli
GCA_002324135.1	NTCZ00000000	SAMN04942835	KCJK327	Escherichia coli
GCA_002324105.1	NTDB00000000	SAMN04942837	KCJK329	Escherichia coli
GCA_002324095.1	NTDA00000000	SAMN04942836	KCJK328	Escherichia coli
GCA_002324075.1	NTDJ00000000	SAMN04942834	KCJK326	Escherichia coli
GCA_002324045.1	NTDI00000000	SAMN04942832	KCJK9	Escherichia coli
GCA_002212815.1	NACG00000000	SAMN05789720	KCJK1770	Escherichia coli
GCA_002212805.1	NACI00000000	SAMN05757713	KCJK1886	Escherichia coli
GCA_002212785.1	NACH00000000	SAMN05789719	KCJK1791	Escherichia coli
GCA_002508245.1	PCGP00000000	SAMN04396087	KCJ3858	Escherichia coli
GCA_002508185.1	PCGQ00000000	SAMN04396088	KCJ3859	Escherichia coli
GCA_002508205.1	PCGI00000000	SAMN04396080	KCJ3820	Escherichia coli
GCA_002508195.1	PCGF00000000	SAMN04396077	KCJ3816	Escherichia coli
GCA_002508155.1	PCGO00000000	SAMN04396086	KCJ3857	Escherichia coli
GCA_002508105.1	PCGH00000000	SAMN04396079	KCJ3819	Escherichia coli
GCA_002508125.1	PCGM00000000	SAMN04396084	KCJ3824	Escherichia coli
GCA_002508115.1	PCGJ00000000	SAMN04396081	KCJ3821	Escherichia coli
GCA_002508025.1	PCGG00000000	SAMN04396078	KCJ3818	Escherichia coli
GCA_002508035.1	PCGN00000000	SAMN04396085	KCJ3855	Escherichia coli
GCA_002508055.1	PCGL00000000	SAMN04396083	KCJ3823	Escherichia coli
GCA_002508045.1	PCGK00000000	SAMN04396082	KCJ3822	Escherichia coli
GCA_002507515.1	PCFU00000000	SAMN04396076	KCJ3815	Escherichia coli
GCA_002093035.1	NAHY00000000	SAMN05757714	KCJK1866	Escherichia coli
GCA_002100105.1	NAEO00000000	SAMN05789722	KCJK1705	Escherichia coli
GCA_002100055.1	NAEL00000000	SAMN05789725	KCJK1478	Escherichia coli
GCA_002100045.1	NAEM00000000	SAMN05789726	KCJK1477	Escherichia coli
GCA_002100035.1	NAEN00000000	SAMN05789724	KCJK1551	Escherichia coli
GCA_002100025.1	NAEE00000000	SAMN05655901	KCJK5680	Escherichia coli
GCA_002099975.1	NAEB00000000	SAMN05655929	KCJK5674	Escherichia coli
GCA_002099965.1	NAFZ00000000	SAMN05789713	KCJK1990	Escherichia coli
GCA_002099955.1	NAGA00000000	SAMN05789712	KCJK2154	Escherichia coli
GCA_002099945.1	NAEK00000000	SAMN05655861	KCJK5716	Escherichia coli
GCA_002099895.1	NAEH00000000	SAMN05655878	KCJK5683	Escherichia coli
GCA_002099885.1	NAEI00000000	SAMN05655875	KCJK5713	Escherichia coli
GCA_002099875.1	NAEJ00000000	SAMN05655868	KCJK5715	Escherichia coli
GCA_002099865.1	NAEG00000000	SAMN05655883	KCJK5682	Escherichia coli
GCA_002099815.1	NAED00000000	SAMN05655907	KCJK5679	Escherichia coli
GCA_002099805.1	NAEA00000000	SAMN05655941	KCJK5636	Escherichia coli
GCA_002099795.1	NAEC00000000	SAMN05655916	KCJK5678	Escherichia coli
GCA_002099785.1	NAEF00000000	SAMN05655892	KCJK5681	Escherichia coli
GCA_002099765.1	NADZ00000000	SAMN05655961	KCJK5635	Escherichia coli
GCA_002099695.1	NAGB00000000	SAMN05789717	KCJK2329	Escherichia coli
GCA_002099735.1	NADY00000000	SAMN05655970	KCJK5633	Escherichia coli
GCA_002099715.1	NADX00000000	SAMN05789714	KCJK2549	Escherichia coli
GCA_002099665.1	NAFX00000000	SAMN05655980	KCJK5581	Escherichia coli
GCA_002099685.1	NAFY00000000	SAMN05789715	KCJK1933	Escherichia coli
GCA_002099625.1	NAFV00000000	SAMN05757725	KCJK2198	Escherichia coli
GCA_002099615.1	NAFU00000000	SAMN05757727	KCJK2158	Escherichia coli
GCA_002099605.1	NAFW00000000	SAMN05655993	KCJK5576	Escherichia coli
GCA_002099585.1	NAFT00000000	SAMN05757733	KCJK2140	Escherichia coli
GCA_002099555.1	NAFS00000000	SAMN05757735	KCJK2115	Escherichia coli
GCA_002099535.1	NAFR00000000	SAMN05757736	KCJK2104	Escherichia coli
GCA_002099525.1	NAFQ00000000	SAMN05757738	KCJK2068	Escherichia coli
GCA_002099495.1	NAFP00000000	SAMN05757740	KCJK2028	Escherichia coli
GCA_002099465.1	NAGC00000000	SAMN05757741	KCJK1963	Escherichia coli
GCA_002099455.1	NAFO00000000	SAMN05757743	KCJK1925	Escherichia coli
GCA_002099435.1	NAFN00000000	SAMN05757745	KCJK1916	Escherichia coli
GCA_002099405.1	NAFM00000000	SAMN05757747	KCJK1906	Escherichia coli
GCA_001885025.1	MPHA00000000	SAMN04191556	KCJ1265	Escherichia coli
GCA_001884975.1	MPGZ00000000	SAMN04335045	KCJ1252	Escherichia coli
GCA_001884965.1	MPHC00000000	SAMN04335044	KCJ1238	Escherichia coli
GCA_001884955.1	MPHD00000000	SAMN04335042	KCJ1231	Escherichia coli
GCA_001884945.1	MPGW00000000	SAMN04335043	KCJ1237	Escherichia coli
GCA_001884895.1	MPGX00000000	SAMN04191554	KCJ1242	Escherichia coli
GCA_001884885.1	MPGY00000000	SAMN04191555	KCJ1244	Escherichia coli
GCA_001884865.1	MPGV00000000	SAMN04096900	JEONG-1234	Escherichia coli
GCA_001884875.1	MPHB00000000	SAMN04191557	KCJ1268	Escherichia coli
GCA_004022065.1	SACX00000000	SAMN04160771	JEONG-9595	Escherichia coli
GCA_003856285.1	RQRW00000000	SAMN05789710	KCJ1409	Escherichia coli
GCA_012677105.1	AATACZ000000000	SAMN04942833	KCJK115	Escherichia coli
GCA_012676865.1	AATACQ000000000	SAMN05232926	KCJK3924	Escherichia coli
GCA_012778615.1	AATGAF000000000	SAMN04160748	JEONG-9616	Escherichia coli
GCA_012778555.1	AATGAA000000000	SAMN04160761	JEONG-8426	Escherichia coli
GCA_012778375.1	AATFZU000000000	SAMN04191532	JEONG-9617	Escherichia coli
GCA_012778335.1	AATFZV000000000	SAMN04160765	JEONG-9415	Escherichia coli
GCA_012778265.1	AATFZP000000000	SAMN04191537	JEONG-9847	Escherichia coli
GCA_012778255.1	AATFZS000000000	SAMN04191534	JEONG-9619	Escherichia coli
GCA_012778235.1	AATFZO000000000	SAMN04191538	JEONG-9848	Escherichia coli
GCA_012778215.1	AATFZQ000000000	SAMN04191533	JEONG-9618	Escherichia coli
GCA_012778195.1	AATFZM000000000	SAMN04191535	JEONG-9620	Escherichia coli
GCA_012778175.1	AATFZR000000000	SAMN04191539	JEONG-9849	Escherichia coli
GCA_012778145.1	AATFZF000000000	SAMN04191540	JEONG-9850	Escherichia coli
GCA_012778135.1	AATFZN000000000	SAMN04191542	JEONG-9852	Escherichia coli
GCA_012778115.1	AATFZH000000000	SAMN04191541	JEONG-9851	Escherichia coli
GCA_012777655.1	AATFYO000000000	SAMN04191545	JEONG-8430	Escherichia coli
GCA_012777135.1	AATFWT000000000	SAMN04191552	KCJ110	Escherichia coli
GCA_012777145.1	AATFWU000000000	SAMN04191549	KCJ115	Escherichia coli
GCA_012777115.1	AATFWS000000000	SAMN04191559	KCJ1246	Escherichia coli
GCA_012776695.1	AATFXT000000000	SAMN04191536	JEONG-9621	Escherichia coli
GCA_012775375.1	AATFXB000000000	SAMN04191550	KCJ108	Escherichia coli
GCA_012775335.1	AATFXA000000000	SAMN04191561	KCJ1220	Escherichia coli
GCA_012775295.1	AATFWZ000000000	SAMN04191558	KCJ1232	Escherichia coli
GCA_012741475.1	AATEDH000000000	SAMN04335039	KCJ4190	Escherichia coli
GCA_012741435.1	AATEDI000000000	SAMN04335036	KCJ2625	Escherichia coli
GCA_012741415.1	AATEDJ000000000	SAMN04335041	KCJ1432	Escherichia coli
GCA_012741375.1	AATEDE000000000	SAMN04335040	KCJ1430	Escherichia coli
GCA_012741395.1	AATEDF000000000	SAMN04335038	KCJ4172	Escherichia coli
GCA_012741355.1	AATEDB000000000	SAMN04335037	KCJ4148	Escherichia coli
GCA_012741335.1	AATEDC000000000	SAMN04335046	KCJ1274	Escherichia coli
GCA_012741315.1	AATECZ000000000	SAMN04335035	KCJ2602	Escherichia coli
GCA_012741295.1	AATEDD000000000	SAMN04335033	KCJ1095	Escherichia coli
GCA_012741255.1	AATEDA000000000	SAMN04335034	KCJ1098	Escherichia coli
GCA_012735995.1	AATCZQ000000000	SAMN04510565	KCJB42	Escherichia coli
GCA_012736015.1	AATCZN000000000	SAMN04510566	KCJB43	Escherichia coli
GCA_012629785.1	AASXUB000000000	SAMN05655851	KCJK5145	Escherichia coli
GCA_012586895.1	AASVAC000000000	SAMN05789711	KCJ4901	Escherichia coli
GCA_013069005.1	AATQTZ000000000	SAMN04191544	JEONG-9856	Escherichia coli
GCA_012097925.1	AARQCV000000000	SAMN10037638	FLAG-43873	Escherichia coli O26
GCA_018095625.1	ABAEAQ000000000	SAMN04191560	KCJ1256	Escherichia coli
GCA_020373025.1	ABDBYD000000000	SAMN05859951	KCJK6528	Escherichia coli
GCA_020372965.1	ABDBYC000000000	SAMN05859952	KCJK6524	Escherichia coli
GCA_020372945.1	ABDBXZ000000000	SAMN05859954	KCJK6501	Escherichia coli
GCA_020372865.1	ABDBYB000000000	SAMN05859958	KCJK6447	Escherichia coli
GCA_020381525.1	ABDCNN000000000	SAMN04510567	KCJB44	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	98
Data volume, Mbytes	62587

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Escherichia coli

GenomeTrakr Project: Florida Department of Health, University of Florida

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