Campylobacter jejuni (ID 309864) - BioProject

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Accession: PRJNA309864 ID: 309864

Campylobacter jejuni

GenomeTrakr Project: California Department of Health - FDLB Micro

See Genome Information for Campylobacter jejuni

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This project is a component of the GenomeTrakr umbrella project for Campylobacter jejuni and Campylobacter coli

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633 additional projects are related by organism.

31 additional projects are components of the GenomeTrakr umbrella project for Campylobacter jejuni and Campylobacter coli.

Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

Accession	PRJNA309864
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Campylobacter jejuni[Taxonomy ID: 197] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni
Submission	Registration date: 14-Nov-2016 US Food and Drug Administration
Related Resources	CDPH FDLB Micro Homepage
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3359
WGS master	77
Genomic DNA	5
SRA Experiments	113
Protein Sequences	131756
Other datasets
BioSample	79
Assembly	79

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

2
77
79

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002407145.1		3	SAMN03580886	CFSAN032805	Campylobacter coli
GCA_001878635.1	MPBJ00000000		SAMN05163892	CDPHFDLB-F15M03174-C1	Campylobacter jejuni
GCA_001878615.1	MOTY00000000		SAMN04442371	CDPHFDLB-F15M01873-B	Campylobacter jejuni
GCA_001878625.1	MOTX00000000		SAMN05163888	CDPHFDLB-F15M01873-C	Campylobacter jejuni
GCA_001878595.1	MOTZ00000000		SAMN05163887	CDPHFDLB-F15M01873-A	Campylobacter jejuni
GCA_001878575.1	MOUA00000000		SAMN05163886	CDPHFDLB-F15M01862-D	Campylobacter jejuni
GCA_001878545.1	MOUB00000000		SAMN05163885	CDPHFDLB-F15M01862-C	Campylobacter jejuni
GCA_001878515.1	MOVE00000000		SAMN04158366	CDPHFDLB-F12M00583-b2	Campylobacter jejuni
GCA_001878525.1	MOUG00000000		SAMN05163882	CDPHFDLB-F15M00668P2	Campylobacter jejuni
GCA_001878485.1	MPBK00000000		SAMN04158365	CDPHFDLB-F12M00583-b1	Campylobacter jejuni
GCA_001878465.1	MOVF00000000		SAMN04531996	CDPHFDLB-F12M00582-a2	Campylobacter jejuni
GCA_001878455.1	MOVG00000000		SAMN04531995	CDPHFDLB-F12M00582-a1	Campylobacter jejuni
GCA_001878435.1	MOVH00000000		SAMN04531994	CDPHFDLB-F12M00581-a2	Campylobacter jejuni
GCA_001878395.1	MOVI00000000		SAMN04531993	CDPHFDLB-F12M00581-a1	Campylobacter jejuni
GCA_001878385.1	MOVJ00000000		SAMN04531992	CDPHFDLB-F12M00580-a2	Campylobacter jejuni
GCA_001878375.1	MOVK00000000		SAMN04531991	CDPHFDLB-F12M00580-a1	Campylobacter jejuni
GCA_001878355.1	MOVL00000000		SAMN04531990	CDPHFDLB-F12M00566-a2	Campylobacter jejuni
GCA_001878335.1	MOVM00000000		SAMN04531989	CDPHFDLB-F12M00566-a1	Campylobacter jejuni
GCA_001878295.1	MOVN00000000		SAMN04531987	CDPHFDLB-F12M00565-3	Campylobacter jejuni
GCA_001878285.1	MOVO00000000		SAMN05163877	CDPHFDLB-M00224	Campylobacter jejuni
GCA_001878275.1	MOVP00000000		SAMN05163876	CDPHFDLB-M00214	Campylobacter jejuni
GCA_001878255.1	MOVQ00000000		SAMN04531988	CDPHFDLB-F12M00565-1	Campylobacter jejuni
GCA_001878235.1	MOVR00000000		SAMN04531985	CDPHFDLB-F12M00562-b9b1a	Campylobacter jejuni
GCA_001878185.1	MOVS00000000		SAMN04531984	CDPHFDLB-F12M00562-b7a1	Campylobacter jejuni
GCA_001878205.1	MPBL00000000		SAMN04531983	CDPHFDLB-F12M00562-b7b1	Campylobacter jejuni
GCA_001878175.1	MOVT00000000		SAMN04442369	CDPHFDLB-F12M00560-a2	Campylobacter jejuni
GCA_001878155.1	MOVU00000000		SAMN04442368	CDPHFDLB-F12M00560-a1	Campylobacter jejuni
GCA_001878125.1	MOVV00000000		SAMN04442367	CDPHFDLB-F12M00559-a2	Campylobacter jejuni
GCA_001878105.1	MOVW00000000		SAMN04442366	CDPHFDLB-F12M00559-a1	Campylobacter jejuni
GCA_001878095.1	MOVX00000000		SAMN04442365	CDPHFDLB-F12M00558	Campylobacter jejuni
GCA_001878065.1	MOVY00000000		SAMN04442364	CDPHFDLB-F12M00554-a3	Campylobacter jejuni
GCA_001878035.1	MOVZ00000000		SAMN04442363	CDPHFDLB-F12M00554-a2	Campylobacter jejuni
GCA_001878025.1	MOWA00000000		SAMN04445877	CDPHFDLB-F12M00521-8k1b	Campylobacter jejuni
GCA_001878015.1	MOWB00000000		SAMN04442362	CDPHFDLB-F12M00521-8k1a	Campylobacter jejuni
GCA_001877985.1	MOWC00000000		SAMN04442361	CDPHFDLB-F12M00521-8g1b	Campylobacter jejuni
GCA_001877975.1	MOWD00000000		SAMN04442360	CDPHFDLB-F12M00521-8g1a	Campylobacter jejuni
GCA_001877945.1	MOWE00000000		SAMN04442357	CDPHFDLB-F12M00521-3k2b	Campylobacter jejuni
GCA_001877935.1	MOWF00000000		SAMN04442356	CDPHFDLB-F12M00521-3k2a	Campylobacter jejuni
GCA_001877905.1	MOWG00000000		SAMN04442359	CDPHFDLB-F12M00521-3g3b	Campylobacter jejuni
GCA_001877895.1	MOWH00000000		SAMN04442358	CDPHFDLB-F12M00521-3g3a	Campylobacter jejuni
GCA_001877865.1	MOWI00000000		SAMN05163878	CDPHFDLB-F12M00436-H	Campylobacter jejuni
GCA_001877855.1	MOWJ00000000		SAMN04442355	CDPHFDLB-F12M00436-D	Campylobacter jejuni
GCA_001877775.1	MOWK00000000		SAMN04442354	CDPHFDLB-F12M00436-A	Campylobacter jejuni
GCA_001877695.1	MOTR00000000		SAMN05163891	CDPHFDLB-F15M03173-B2	Campylobacter jejuni
GCA_001877705.1	MOTT00000000		SAMN05163889	CDPHFDLB-F15M03172-A2	Campylobacter jejuni
GCA_001877725.1	MOTQ00000000		SAMN04442379	CDPHFDLB-F15M03174-C2	Campylobacter jejuni
GCA_001877715.1	MOTS00000000		SAMN04442378	CDPHFDLB-F15M03173-B1	Campylobacter jejuni
GCA_001877675.1	MOTU00000000		SAMN04442374	CDPHFDLB-F15M03172-A1	Campylobacter jejuni
GCA_001877655.1	MOTV00000000		SAMN04442373	CDPHFDLB-F15M01918	Campylobacter jejuni
GCA_001877625.1	MOTW00000000		SAMN04442372	CDPHFDLB-F15M01909	Campylobacter jejuni
GCA_001877615.1	MOUC00000000		SAMN05163884	CDPHFDLB-F15M01862-B	Campylobacter jejuni
GCA_001877595.1	MOUD00000000		SAMN04442370	CDPHFDLB-F15M01862-A	Campylobacter jejuni
GCA_001877575.1	MOUE00000000		SAMN05163883	CDPHFDLB-F15M00669P5	Campylobacter jejuni
GCA_001877555.1	MOUF00000000		SAMN04338326	CDPHFDLB-F15M00669P1	Campylobacter jejuni
GCA_001877525.1	MOUH00000000		SAMN04338325	CDPHFDLB-F15M00668P1	Campylobacter jejuni
GCA_001877515.1	MOUI00000000		SAMN05163881	CDPHFDLB-F15M00667P3	Campylobacter jejuni
GCA_001877495.1	MOUJ00000000		SAMN04338324	CDPHFDLB-F15M00667P1	Campylobacter jejuni
GCA_001877465.1	MOUK00000000		SAMN05163880	CDPHFDLB-F15M00665P2	Campylobacter jejuni
GCA_001877445.1	MOUL00000000		SAMN04338323	CDPHFDLB-F15M00665P1	Campylobacter jejuni
GCA_001877435.1	MOUM00000000		SAMN04338322	CDPHFDLB-F15M00603F23	Campylobacter jejuni
GCA_001877415.1	MOUN00000000		SAMN04096402	CDPHFDLB-F15M00602	Campylobacter jejuni
GCA_001877395.1	MOUO00000000		SAMN04158380	CDPHFDLB-F15M00601	Campylobacter jejuni
GCA_001877365.1	MOUP00000000		SAMN04158379	CDPHFDLB-F15M00600	Campylobacter jejuni
GCA_001877355.1	MOUQ00000000		SAMN04158378	CDPHFDLB-F15M00596	Campylobacter jejuni
GCA_001877335.1	MOUR00000000		SAMN04158377	CDPHFDLB-F15M00592	Campylobacter jejuni
GCA_001877305.1	MOUS00000000		SAMN04158376	CDPHFDLB-F15M00591	Campylobacter jejuni
GCA_001877285.1	MOUT00000000		SAMN04158375	CDPHFDLB-F15M00521-2	Campylobacter jejuni
GCA_001877265.1	MOUU00000000		SAMN04158374	CDPHFDLB-F15M00521-1	Campylobacter jejuni
GCA_001877255.1	MOUV00000000		SAMN05163879	CDPHFDLB-F15M00516E2	Campylobacter jejuni
GCA_001877175.1	MOUY00000000		SAMN04158373	CDPHFDLB-F12M00589-a2	Campylobacter jejuni
GCA_001877195.1	MOUW00000000		SAMN04338321	CDPHFDLB-F15M00516E1	Campylobacter jejuni
GCA_001877205.1	MOUZ00000000		SAMN04158371	CDPHFDLB-F12M00589-a1	Campylobacter jejuni
GCA_001877185.1	MOUX00000000		SAMN04531986	CDPHFDLB-F12M005620b9b2a	Campylobacter jejuni
GCA_001877125.1	MOVA00000000		SAMN04158370	CDPHFDLB-F12M00585-a2	Campylobacter jejuni
GCA_001877095.1	MOVC00000000		SAMN04158368	CDPHFDLB-F12M00584-a2	Campylobacter jejuni
GCA_001877105.1	MOVD00000000		SAMN04158367	CDPHFDLB-F12M00584-a1	Campylobacter jejuni
GCA_001877115.1	MOVB00000000		SAMN04158369	CDPHFDLB-F12M00585-a1	Campylobacter jejuni
GCA_002407125.1		2	SAMN03580887	CFSAN032806	Campylobacter jejuni
GCA_032442325.1	ABNLYX000000000		SAMN36518410	PNUSAC037218	Campylobacter jejuni

SRA Data Details

Parameter	Value
Data volume, Gbases	28
Data volume, Mbytes	16269

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Campylobacter jejuni

GenomeTrakr Project: California Department of Health - FDLB Micro

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